Wall clock time and date at job start Tue Mar 31 2020 19:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47280 * 2 1 4 4 O 1.42897 * 109.47294 * 179.97438 * 3 2 1 5 5 C 1.35900 * 117.00088 * 180.02562 * 4 3 2 6 6 C 1.38729 * 120.05623 * 180.02562 * 5 4 3 7 7 C 1.38138 * 119.94623 * 180.02562 * 6 5 4 8 8 C 1.38268 * 120.05583 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.94589 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47163 * 60.00240 * 9 8 7 11 11 C 1.52994 * 109.47368 * 299.99888 * 9 8 7 12 12 N 1.46906 * 109.46990 * 179.97438 * 9 8 7 13 13 C 1.46902 * 110.99573 * 180.02562 * 12 9 8 14 14 C 1.50707 * 109.46656 * 179.97438 * 13 12 9 15 15 O 1.21277 * 119.99918 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99715 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99702 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47045 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99671 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00183 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99837 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00146 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.46748 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46978 * 120.00117 * 22 20 18 25 25 H 1.48502 * 109.46880 * 239.99856 * 22 20 18 26 26 C 1.38265 * 120.10989 * 0.24916 * 8 7 6 27 27 C 1.38149 * 120.05729 * 359.45334 * 26 8 7 28 28 H 1.09005 * 109.46609 * 60.00164 * 1 2 3 29 29 H 1.09002 * 109.47402 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47486 * 300.00464 * 1 2 3 31 31 H 1.08996 * 109.47209 * 239.99881 * 2 1 3 32 32 H 1.09005 * 109.46609 * 119.99836 * 2 1 3 33 33 H 1.09008 * 109.46840 * 59.99497 * 3 2 1 34 34 H 1.08998 * 109.47016 * 299.99843 * 3 2 1 35 35 H 1.08004 * 120.02842 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.97707 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47598 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.46781 * 299.99834 * 10 9 8 39 39 H 1.09000 * 109.47321 * 59.99882 * 10 9 8 40 40 H 1.09002 * 109.47331 * 300.00208 * 11 9 8 41 41 H 1.09002 * 109.47018 * 59.99896 * 11 9 8 42 42 H 1.08999 * 109.47836 * 179.97438 * 11 9 8 43 43 H 1.00896 * 111.00309 * 56.04484 * 12 9 8 44 44 H 1.08990 * 109.47358 * 299.99539 * 13 12 9 45 45 H 1.09004 * 109.47457 * 60.00221 * 13 12 9 46 46 H 0.96993 * 119.99587 * 0.02562 * 16 14 13 47 47 H 1.09002 * 109.47247 * 300.00372 * 17 16 14 48 48 H 1.08995 * 109.47162 * 60.00294 * 17 16 14 49 49 H 0.97003 * 119.99678 * 180.02562 * 21 20 18 50 50 H 1.08005 * 119.97337 * 179.70640 * 26 8 7 51 51 H 1.07995 * 120.03073 * 180.24950 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0860 2.6534 0.0012 6 6 5.4713 2.7273 0.0013 7 6 6.0961 3.9593 0.0025 8 6 5.3419 5.1182 0.0041 9 6 6.0261 6.4610 0.0059 10 6 6.9002 6.5897 -1.2431 11 6 6.9003 6.5862 1.2553 12 7 5.0143 7.5261 0.0068 13 6 5.6462 8.8522 0.0080 14 6 4.5794 9.9168 0.0083 15 8 3.4083 9.6017 0.0080 16 7 4.9270 11.2191 0.0099 17 6 3.8901 12.2539 0.0107 18 6 4.5382 13.6144 0.0118 19 1 5.6149 13.6996 0.0123 20 6 3.7567 14.7503 0.0132 21 7 2.4456 14.6464 0.0131 22 14 4.5601 16.4367 0.0153 23 1 6.0369 16.2814 0.0157 24 1 4.1409 17.1862 -1.1962 25 1 4.1409 17.1831 1.2288 26 6 3.9611 5.0472 0.0098 27 6 3.3315 3.8176 0.0024 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 6.0609 1.8224 0.0013 36 1 7.1745 4.0175 0.0029 37 1 7.3954 7.5607 -1.2416 38 1 7.6509 5.7994 -1.2442 39 1 6.2774 6.5005 -2.1332 40 1 6.2776 6.4945 2.1452 41 1 7.6510 5.7959 1.2542 42 1 7.3955 7.5572 1.2565 43 1 4.3835 7.4250 0.7878 44 1 6.2662 8.9585 0.8981 45 1 6.2664 8.9601 -0.8819 46 1 5.8637 11.4709 0.0105 47 1 3.2702 12.1478 -0.8796 48 1 3.2697 12.1459 0.9003 49 1 1.8958 15.4456 0.0137 50 1 3.3742 5.9539 0.0158 51 1 2.2529 3.7627 0.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796573446.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:32 Heat of formation + Delta-G solvation = -82.416308 kcal Electronic energy + Delta-G solvation = -27958.655912 eV Core-core repulsion = 24049.887345 eV Total energy + Delta-G solvation = -3908.768568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.37707 -40.59126 -39.55419 -37.39722 -36.09345 -34.79739 -34.33245 -32.86324 -31.92422 -29.86730 -29.60433 -28.18938 -27.69957 -26.97320 -24.53534 -23.79131 -23.33777 -22.09075 -21.36779 -20.27563 -19.37592 -18.98762 -17.88939 -17.26666 -17.24931 -16.89618 -16.81640 -16.41227 -15.96207 -15.67375 -15.36694 -15.22602 -15.07147 -14.73784 -14.54385 -14.46153 -14.22138 -13.99630 -13.89785 -13.67277 -13.54445 -13.34322 -13.22694 -12.94045 -12.90256 -12.76535 -12.69943 -12.53610 -12.23718 -12.21716 -12.07212 -12.00432 -11.65192 -11.58298 -11.48218 -11.45084 -10.81378 -10.71347 -9.92010 -9.81132 -9.39275 -8.99301 -8.29134 -6.45713 0.41971 0.47898 1.43436 1.44558 1.58088 1.81324 2.22241 2.29411 2.49893 2.80972 3.05944 3.25975 3.69710 3.82774 3.91537 3.95728 3.97329 4.03594 4.17647 4.23672 4.26371 4.35553 4.39092 4.46967 4.48414 4.51457 4.61394 4.69489 4.79229 4.80577 4.85963 4.96181 4.99800 5.08564 5.11931 5.13354 5.15204 5.22936 5.25009 5.31825 5.37377 5.40552 5.47441 5.50054 5.62243 5.71734 5.85080 5.85663 6.09306 6.32732 6.46047 6.66231 6.96165 7.24151 7.54142 8.83323 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.001860 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.159407 B =15046.961974 C =16413.822700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.052 3.948 4 O -0.330 6.330 5 C 0.111 3.889 6 C -0.159 4.159 7 C -0.069 4.069 8 C -0.112 4.112 9 C 0.156 3.844 10 C -0.138 4.138 11 C -0.178 4.178 12 N -0.677 5.677 13 C 0.053 3.947 14 C 0.492 3.508 15 O -0.593 6.593 16 N -0.709 5.709 17 C 0.267 3.733 18 C -0.555 4.555 19 H 0.085 0.915 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.986 3.014 23 H -0.252 1.252 24 H -0.280 1.280 25 H -0.279 1.279 26 C -0.080 4.080 27 C -0.216 4.216 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.343 0.657 44 H 0.088 0.912 45 H 0.123 0.877 46 H 0.408 0.592 47 H -0.015 1.015 48 H -0.014 1.014 49 H 0.268 0.732 50 H 0.122 0.878 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.680 -28.157 0.919 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.023 4.023 4 O -0.244 6.244 5 C 0.066 3.934 6 C -0.177 4.177 7 C -0.087 4.087 8 C -0.113 4.113 9 C 0.066 3.934 10 C -0.195 4.195 11 C -0.236 4.236 12 N -0.310 5.310 13 C -0.079 4.079 14 C 0.279 3.721 15 O -0.474 6.474 16 N -0.359 5.359 17 C 0.144 3.856 18 C -0.593 4.593 19 H 0.103 0.897 20 C -0.197 4.197 21 N -0.571 5.571 22 Si 0.809 3.191 23 H -0.175 1.175 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.098 4.098 27 C -0.235 4.235 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.162 0.838 36 H 0.173 0.827 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.163 0.837 44 H 0.105 0.895 45 H 0.141 0.859 46 H 0.244 0.756 47 H 0.003 0.997 48 H 0.004 0.996 49 H 0.077 0.923 50 H 0.140 0.860 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.673 -28.474 0.235 29.767 hybrid contribution -0.225 1.413 0.869 1.674 sum 8.447 -27.061 1.103 28.371 Atomic orbital electron populations 1.21700 0.93164 1.03260 1.02494 1.21480 0.96889 0.93603 1.03623 1.23062 0.77454 1.00012 1.01745 1.86004 1.22509 1.27094 1.88804 1.19211 0.92968 0.84042 0.97152 1.20624 0.91076 0.99372 1.06653 1.20963 1.00856 0.89947 0.96937 1.19733 0.93249 0.94662 1.03613 1.19776 0.90048 0.87141 0.96442 1.21948 0.98716 1.03179 0.95661 1.22568 1.00554 1.03733 0.96768 1.60362 1.18957 1.00468 1.51196 1.21855 0.94012 0.87103 1.04924 1.21470 0.90659 0.84266 0.75680 1.90634 1.22096 1.82735 1.51913 1.46162 1.11136 1.05502 1.73149 1.18509 0.87135 0.86055 0.93913 1.21672 0.94480 0.90462 1.52643 0.89668 1.26086 0.95248 1.04501 0.93894 1.70155 1.05738 1.31046 1.50136 0.85099 0.79222 0.77194 0.77616 1.17488 1.20542 1.20517 1.20999 0.95089 0.97137 0.96610 1.21364 1.00502 0.92376 1.09263 0.92216 0.90668 0.92164 0.90872 0.90825 0.91815 0.91912 0.83793 0.82736 0.91176 0.89868 0.93257 0.93288 0.89781 0.90992 0.83723 0.89451 0.85921 0.75589 0.99739 0.99592 0.92303 0.85988 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.98 0.71 -0.65 16 2 C -0.12 -1.42 6.30 30.59 0.19 -1.22 16 3 C 0.05 0.83 4.74 71.98 0.34 1.17 16 4 O -0.33 -6.90 10.14 -92.42 -0.94 -7.83 16 5 C 0.11 2.45 6.69 22.51 0.15 2.60 16 6 C -0.16 -2.99 9.99 22.36 0.22 -2.77 16 7 C -0.07 -1.18 8.70 22.25 0.19 -0.99 16 8 C -0.11 -2.35 4.78 -19.85 -0.09 -2.45 16 9 C 0.16 3.03 0.79 2.78 0.00 3.03 16 10 C -0.14 -2.30 8.05 71.98 0.58 -1.72 16 11 C -0.18 -2.74 8.04 71.98 0.58 -2.16 16 12 N -0.68 -17.77 4.73 -477.86 -2.26 -20.03 16 13 C 0.05 1.36 5.38 85.56 0.46 1.82 16 14 C 0.49 19.47 7.87 87.66 0.69 20.16 16 15 O -0.59 -29.53 16.20 -3.02 -0.05 -29.57 16 16 N -0.71 -29.62 5.55 -466.78 -2.59 -32.21 16 17 C 0.27 14.74 5.43 85.63 0.46 15.21 16 18 C -0.55 -30.17 9.28 25.60 0.24 -29.93 16 19 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 20 C 0.00 0.12 5.46 84.65 0.46 0.58 16 21 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 22 Si 0.99 42.27 29.54 68.60 2.03 44.30 16 23 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 26 C -0.08 -1.98 9.14 22.25 0.20 -1.78 16 27 C -0.22 -4.99 9.04 22.37 0.20 -4.79 16 28 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.86 8.14 -2.38 -0.02 0.85 16 33 H 0.06 0.97 7.66 -2.38 -0.02 0.96 16 34 H 0.06 0.98 7.67 -2.39 -0.02 0.96 16 35 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.16 1.72 7.09 -2.91 -0.02 1.70 16 37 H 0.07 1.04 6.40 -2.39 -0.02 1.02 16 38 H 0.08 1.00 7.38 -2.39 -0.02 0.98 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.97 7.38 -2.39 -0.02 0.95 16 42 H 0.07 1.00 6.41 -2.39 -0.02 0.99 16 43 H 0.34 9.93 7.24 -89.70 -0.65 9.28 16 44 H 0.09 1.80 6.31 -2.39 -0.02 1.79 16 45 H 0.12 2.67 6.30 -2.38 -0.02 2.65 16 46 H 0.41 13.81 8.32 -92.71 -0.77 13.04 16 47 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 48 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 49 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 50 H 0.12 3.42 6.39 -2.91 -0.02 3.41 16 51 H 0.13 2.71 6.30 -2.91 -0.02 2.69 16 Total: -1.00 -74.23 408.43 1.60 -72.63 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -0.48 Total: 32.91 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 5.60 Total: -3.90 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -4.56 Total: -108.53 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.99 Total: -37.41 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -74.23 1.60 -72.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796573446.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.785 kcal (2) G-P(sol) polarization free energy of solvation -74.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds