Wall clock time and date at job start Tue Mar 31 2020 20:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.67032 * 2 1 4 4 C 1.54709 * 110.74964 * 123.42167 * 2 1 3 5 5 C 1.51646 * 101.94659 * 143.54791 * 4 2 1 6 6 C 1.37742 * 132.17237 * 164.39602 * 5 4 2 7 7 C 1.38347 * 119.97939 * 180.90412 * 6 5 4 8 8 C 1.50693 * 120.11766 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47360 * 89.99897 * 8 7 6 10 10 C 1.46899 * 111.00076 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.46798 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47555 * 304.99556 * 11 10 9 13 13 O 1.42901 * 109.47612 * 65.00079 * 11 10 9 14 14 C 1.53000 * 109.47000 * 185.00066 * 11 10 9 15 15 N 1.46905 * 109.47114 * 180.02562 * 14 11 10 16 16 C 1.46900 * 110.99850 * 293.94896 * 15 14 11 17 17 C 1.46906 * 111.00051 * 169.99929 * 15 14 11 18 18 C 1.50699 * 109.47140 * 189.99841 * 17 15 14 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 15 20 20 C 1.37873 * 119.99861 * 180.02562 * 18 17 15 21 21 N 1.31522 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99980 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46946 * 59.99897 * 22 20 18 24 24 H 1.48506 * 109.46938 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46921 * 299.99580 * 22 20 18 26 26 C 1.38286 * 119.76480 * 0.26695 * 7 6 5 27 27 C 1.37935 * 120.35311 * 359.26250 * 26 7 6 28 28 C 1.38883 * 107.04068 * 344.86142 * 5 4 2 29 29 O 1.36135 * 111.22262 * 358.56115 * 28 5 4 30 30 H 1.09000 * 109.47697 * 181.76731 * 1 2 3 31 31 H 1.08999 * 109.47517 * 301.77201 * 1 2 3 32 32 H 1.09007 * 109.46971 * 61.76821 * 1 2 3 33 33 H 1.09005 * 110.93328 * 25.38426 * 4 2 1 34 34 H 1.08998 * 110.93683 * 261.71109 * 4 2 1 35 35 H 1.07998 * 120.01113 * 0.87459 * 6 5 4 36 36 H 1.09005 * 109.47183 * 329.99692 * 8 7 6 37 37 H 1.09001 * 109.47380 * 210.00042 * 8 7 6 38 38 H 1.00903 * 110.99433 * 303.95349 * 9 8 7 39 39 H 1.08995 * 109.47186 * 60.00137 * 10 9 8 40 40 H 1.08998 * 109.47052 * 299.99451 * 10 9 8 41 41 H 0.96697 * 113.99735 * 59.99435 * 13 11 10 42 42 H 1.08997 * 109.47704 * 60.00204 * 14 11 10 43 43 H 1.09000 * 109.47058 * 299.99530 * 14 11 10 44 44 H 1.08996 * 109.47030 * 296.04770 * 16 15 14 45 45 H 1.08999 * 109.46702 * 56.04909 * 16 15 14 46 46 H 1.08996 * 109.46890 * 176.04778 * 16 15 14 47 47 H 1.09004 * 109.47040 * 309.99779 * 17 15 14 48 48 H 1.09000 * 109.47033 * 69.99731 * 17 15 14 49 49 H 0.96992 * 120.00038 * 179.97438 * 21 20 18 50 50 H 1.08002 * 119.82307 * 179.51591 * 26 7 6 51 51 H 1.08000 * 119.88538 * 180.25970 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0781 -0.7969 1.2075 5 6 3.3052 -1.4614 0.6141 6 6 4.3938 -2.0769 1.1915 7 6 5.3998 -2.5928 0.3940 8 6 6.5924 -3.2663 1.0224 9 7 6.3186 -4.7011 1.1787 10 6 7.4619 -5.3917 1.7903 11 6 7.1395 -6.8800 1.9370 12 1 6.2112 -6.9974 2.4961 13 8 6.9928 -7.4657 0.6418 14 6 8.2772 -7.5769 2.6859 15 7 7.9680 -9.0061 2.8263 16 6 6.8015 -9.2094 3.6957 17 6 9.1323 -9.7502 3.3252 18 6 8.8637 -11.2296 3.2247 19 1 7.9221 -11.5819 2.8301 20 6 9.8197 -12.1334 3.6374 21 7 10.9661 -11.7043 4.1184 22 14 9.4871 -13.9673 3.5122 23 1 9.2395 -14.3297 2.0935 24 1 10.6640 -14.7194 4.0166 25 1 8.2936 -14.3106 4.3264 26 6 5.3100 -2.4827 -0.9815 27 6 4.2161 -1.8753 -1.5622 28 6 3.1972 -1.3568 -0.7665 29 8 2.0394 -0.7368 -1.1247 30 1 -0.3634 -1.0271 0.0317 31 1 -0.3634 0.5411 0.8736 32 1 -0.3633 0.4862 -0.9055 33 1 1.3559 -1.5412 1.5431 34 1 2.3533 -0.1280 2.0230 35 1 4.4623 -2.1564 2.2663 36 1 6.7859 -2.8247 2.0000 37 1 7.4650 -3.1305 0.3834 38 1 5.4767 -4.8522 1.7140 39 1 7.6608 -4.9647 2.7732 40 1 8.3406 -5.2706 1.1568 41 1 7.7824 -7.3981 0.0879 42 1 8.3892 -7.1303 3.6738 43 1 9.2056 -7.4596 2.1268 44 1 7.0335 -8.8615 4.7022 45 1 5.9538 -8.6475 3.3034 46 1 6.5516 -10.2699 3.7263 47 1 10.0080 -9.4984 2.7268 48 1 9.3148 -9.4839 4.3663 49 1 11.6385 -12.3401 4.4091 50 1 6.0985 -2.8781 -1.6046 51 1 4.1517 -1.7972 -2.6374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905567432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:27 Heat of formation + Delta-G solvation = -53.219492 kcal Electronic energy + Delta-G solvation = -27676.227637 eV Core-core repulsion = 23768.725138 eV Total energy + Delta-G solvation = -3907.502499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48418 -38.64758 -37.94717 -35.88440 -34.84954 -33.55329 -32.49543 -31.67011 -31.05148 -29.33687 -27.35358 -26.99812 -26.18396 -24.69298 -23.16482 -22.36760 -22.10436 -21.47849 -20.99392 -20.11199 -17.85803 -17.22712 -16.65083 -16.40155 -15.90145 -15.82702 -15.28951 -15.07698 -14.84303 -14.60985 -14.49864 -14.23617 -13.98676 -13.58948 -13.50131 -13.46841 -13.31974 -13.14935 -12.81843 -12.75614 -12.53083 -12.27694 -11.94152 -11.84325 -11.78966 -11.49027 -11.30376 -11.13811 -11.08963 -10.97291 -10.87782 -10.73255 -10.64094 -10.26538 -9.94562 -9.54449 -9.17168 -9.09318 -8.57801 -8.41229 -8.28684 -7.17282 -6.00769 -4.01726 1.00804 1.06168 2.85038 3.33398 3.35959 3.39327 3.43235 3.95806 4.04574 4.15246 4.42782 4.45394 4.54343 4.59393 4.67884 4.76990 4.84049 4.90221 4.97242 5.09021 5.10735 5.17662 5.19315 5.29276 5.34454 5.35476 5.40988 5.43166 5.46903 5.58100 5.58423 5.65828 5.71012 5.78916 5.96647 6.07030 6.09062 6.20947 6.31151 6.32361 6.35732 6.43280 6.78183 6.81516 6.90856 7.21168 7.28801 7.34339 7.82428 8.07518 8.18249 8.23900 8.57843 9.06131 9.62450 11.10159 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.001587 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.198479 B =17637.000725 C =17896.663761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.085 0.915 4 C -0.106 4.106 5 C -0.177 4.177 6 C -0.064 4.064 7 C -0.107 4.107 8 C 0.103 3.897 9 N -0.673 5.673 10 C 0.026 3.974 11 C 0.118 3.882 12 H 0.091 0.909 13 O -0.535 6.535 14 C 0.024 3.976 15 N -0.528 5.528 16 C 0.038 3.962 17 C 0.193 3.807 18 C -0.506 4.506 19 H 0.064 0.936 20 C 0.054 3.946 21 N -0.901 5.901 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.060 4.060 27 C -0.138 4.138 28 C 0.104 3.896 29 O -0.304 6.304 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.341 0.659 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.369 0.631 42 H 0.026 0.974 43 H 0.070 0.930 44 H 0.008 0.992 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.028 0.972 48 H -0.011 1.011 49 H 0.261 0.739 50 H 0.134 0.866 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.963 27.696 -6.498 32.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.103 0.897 4 C -0.143 4.143 5 C -0.178 4.178 6 C -0.083 4.083 7 C -0.108 4.108 8 C -0.026 4.026 9 N -0.304 5.304 10 C -0.104 4.104 11 C 0.057 3.943 12 H 0.108 0.892 13 O -0.338 6.338 14 C -0.106 4.106 15 N -0.252 5.252 16 C -0.111 4.111 17 C 0.068 3.932 18 C -0.544 4.544 19 H 0.082 0.918 20 C -0.147 4.147 21 N -0.541 5.541 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.078 4.078 27 C -0.157 4.157 28 C 0.059 3.941 29 O -0.218 6.218 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.139 0.861 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.159 0.841 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.215 0.785 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.026 0.974 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.046 0.954 48 H 0.006 0.994 49 H 0.071 0.929 50 H 0.152 0.848 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.427 27.156 -7.504 32.613 hybrid contribution 0.714 -0.170 1.813 1.956 sum -15.713 26.986 -5.691 31.742 Atomic orbital electron populations 1.21891 0.92065 1.03576 1.03199 1.23377 0.95801 0.95350 0.83425 0.89669 1.21861 0.94864 0.99235 0.98302 1.20685 0.97678 1.05432 0.93971 1.20171 0.91940 0.96560 0.99582 1.19626 0.96899 1.00638 0.93639 1.20807 0.95273 0.87754 0.98752 1.60431 1.05534 1.08610 1.55865 1.22762 0.94221 0.95825 0.97569 1.21849 0.98794 0.88216 0.85437 0.89157 1.86593 1.40893 1.81192 1.25159 1.22723 0.97963 0.91452 0.98448 1.62019 1.07389 1.05475 1.50351 1.22233 0.93229 1.02459 0.93155 1.19747 0.87128 0.93220 0.93130 1.21141 1.01918 0.90401 1.40975 0.91833 1.24992 0.95052 0.99228 0.95399 1.69951 1.06389 1.34581 1.43156 0.86542 0.77457 0.84772 0.78529 1.20106 1.21405 1.20312 1.20776 0.96854 0.95910 0.94283 1.20278 0.92334 1.03293 0.99799 1.19556 0.86930 0.94795 0.92841 1.86854 1.34546 1.62689 1.37751 0.91346 0.90270 0.91239 0.89051 0.89223 0.86106 0.94635 0.90085 0.84055 0.94653 0.90499 0.78536 0.95608 0.91154 0.97370 0.93534 0.90833 0.95365 0.99366 0.92930 0.84845 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.60 37.16 0.36 -0.36 16 2 C 0.08 0.52 4.26 -25.83 -0.11 0.41 16 3 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.71 6.65 -26.52 -0.18 -0.88 16 5 C -0.18 -1.65 6.27 -104.10 -0.65 -2.30 16 6 C -0.06 -0.58 9.70 -39.72 -0.39 -0.96 16 7 C -0.11 -1.01 5.40 -104.57 -0.56 -1.57 16 8 C 0.10 0.92 5.82 -4.98 -0.03 0.89 16 9 N -0.67 -7.19 6.44 -115.06 -0.74 -7.93 16 10 C 0.03 0.29 5.32 -3.83 -0.02 0.27 16 11 C 0.12 1.68 3.02 -26.73 -0.08 1.60 16 12 H 0.09 1.34 6.47 -51.93 -0.34 1.00 16 13 O -0.53 -8.61 13.15 -35.23 -0.46 -9.08 16 14 C 0.02 0.41 4.62 -3.82 -0.02 0.40 16 15 N -0.53 -11.52 4.62 -244.36 -1.13 -12.65 16 16 C 0.04 0.76 9.16 60.06 0.55 1.31 16 17 C 0.19 5.08 4.72 -4.97 -0.02 5.06 16 18 C -0.51 -14.46 8.52 -34.44 -0.29 -14.75 16 19 H 0.06 1.81 7.10 -52.48 -0.37 1.44 16 20 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 22 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.06 -0.56 9.68 -39.67 -0.38 -0.94 16 27 C -0.14 -1.35 10.06 -39.30 -0.40 -1.75 16 28 C 0.10 1.09 7.03 -38.95 -0.27 0.81 16 29 O -0.30 -3.09 10.81 -20.17 -0.22 -3.31 16 30 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.57 7.90 -51.93 -0.41 0.16 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 37 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.34 3.63 8.72 -39.29 -0.34 3.29 16 39 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.37 4.98 9.04 45.56 0.41 5.39 16 42 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 43 H 0.07 1.20 7.93 -51.93 -0.41 0.78 16 44 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.05 0.81 6.30 -51.93 -0.33 0.48 16 46 H 0.07 1.59 6.86 -51.93 -0.36 1.23 16 47 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 48 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 50 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 51 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 412.72 15.07 6.22 6.22 Total: -1.00 -32.98 412.72 -11.24 -44.21 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.02 Total: 3.17 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.60 Total: -11.31 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -1.13 Total: -46.82 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.68 Total: -12.39 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.98 -11.24 -44.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905567432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.006 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds