Wall clock time and date at job start Tue Mar 31 2020 20:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.67032 * 2 1 4 4 C 1.54709 * 110.74964 * 123.42167 * 2 1 3 5 5 C 1.51646 * 101.94659 * 143.54791 * 4 2 1 6 6 C 1.37742 * 132.17237 * 164.39602 * 5 4 2 7 7 C 1.38347 * 119.97939 * 180.90412 * 6 5 4 8 8 C 1.50693 * 120.11766 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47360 * 89.99897 * 8 7 6 10 10 C 1.46899 * 111.00076 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.46798 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47555 * 304.99556 * 11 10 9 13 13 O 1.42901 * 109.47612 * 65.00079 * 11 10 9 14 14 C 1.53000 * 109.47000 * 185.00066 * 11 10 9 15 15 N 1.46905 * 109.47114 * 180.02562 * 14 11 10 16 16 C 1.46900 * 110.99850 * 293.94896 * 15 14 11 17 17 C 1.46906 * 111.00051 * 169.99929 * 15 14 11 18 18 C 1.50699 * 109.47140 * 189.99841 * 17 15 14 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 15 20 20 C 1.37873 * 119.99861 * 180.02562 * 18 17 15 21 21 N 1.31522 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99980 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46946 * 59.99897 * 22 20 18 24 24 H 1.48506 * 109.46938 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46921 * 299.99580 * 22 20 18 26 26 C 1.38286 * 119.76480 * 0.26695 * 7 6 5 27 27 C 1.37935 * 120.35311 * 359.26250 * 26 7 6 28 28 C 1.38883 * 107.04068 * 344.86142 * 5 4 2 29 29 O 1.36135 * 111.22262 * 358.56115 * 28 5 4 30 30 H 1.09000 * 109.47697 * 181.76731 * 1 2 3 31 31 H 1.08999 * 109.47517 * 301.77201 * 1 2 3 32 32 H 1.09007 * 109.46971 * 61.76821 * 1 2 3 33 33 H 1.09005 * 110.93328 * 25.38426 * 4 2 1 34 34 H 1.08998 * 110.93683 * 261.71109 * 4 2 1 35 35 H 1.07998 * 120.01113 * 0.87459 * 6 5 4 36 36 H 1.09005 * 109.47183 * 329.99692 * 8 7 6 37 37 H 1.09001 * 109.47380 * 210.00042 * 8 7 6 38 38 H 1.00903 * 110.99433 * 303.95349 * 9 8 7 39 39 H 1.08995 * 109.47186 * 60.00137 * 10 9 8 40 40 H 1.08998 * 109.47052 * 299.99451 * 10 9 8 41 41 H 0.96697 * 113.99735 * 59.99435 * 13 11 10 42 42 H 1.08997 * 109.47704 * 60.00204 * 14 11 10 43 43 H 1.09000 * 109.47058 * 299.99530 * 14 11 10 44 44 H 1.08996 * 109.47030 * 296.04770 * 16 15 14 45 45 H 1.08999 * 109.46702 * 56.04909 * 16 15 14 46 46 H 1.08996 * 109.46890 * 176.04778 * 16 15 14 47 47 H 1.09004 * 109.47040 * 309.99779 * 17 15 14 48 48 H 1.09000 * 109.47033 * 69.99731 * 17 15 14 49 49 H 0.96992 * 120.00038 * 179.97438 * 21 20 18 50 50 H 1.08002 * 119.82307 * 179.51591 * 26 7 6 51 51 H 1.08000 * 119.88538 * 180.25970 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0781 -0.7969 1.2075 5 6 3.3052 -1.4614 0.6141 6 6 4.3938 -2.0769 1.1915 7 6 5.3998 -2.5928 0.3940 8 6 6.5924 -3.2663 1.0224 9 7 6.3186 -4.7011 1.1787 10 6 7.4619 -5.3917 1.7903 11 6 7.1395 -6.8800 1.9370 12 1 6.2112 -6.9974 2.4961 13 8 6.9928 -7.4657 0.6418 14 6 8.2772 -7.5769 2.6859 15 7 7.9680 -9.0061 2.8263 16 6 6.8015 -9.2094 3.6957 17 6 9.1323 -9.7502 3.3252 18 6 8.8637 -11.2296 3.2247 19 1 7.9221 -11.5819 2.8301 20 6 9.8197 -12.1334 3.6374 21 7 10.9661 -11.7043 4.1184 22 14 9.4871 -13.9673 3.5122 23 1 9.2395 -14.3297 2.0935 24 1 10.6640 -14.7194 4.0166 25 1 8.2936 -14.3106 4.3264 26 6 5.3100 -2.4827 -0.9815 27 6 4.2161 -1.8753 -1.5622 28 6 3.1972 -1.3568 -0.7665 29 8 2.0394 -0.7368 -1.1247 30 1 -0.3634 -1.0271 0.0317 31 1 -0.3634 0.5411 0.8736 32 1 -0.3633 0.4862 -0.9055 33 1 1.3559 -1.5412 1.5431 34 1 2.3533 -0.1280 2.0230 35 1 4.4623 -2.1564 2.2663 36 1 6.7859 -2.8247 2.0000 37 1 7.4650 -3.1305 0.3834 38 1 5.4767 -4.8522 1.7140 39 1 7.6608 -4.9647 2.7732 40 1 8.3406 -5.2706 1.1568 41 1 7.7824 -7.3981 0.0879 42 1 8.3892 -7.1303 3.6738 43 1 9.2056 -7.4596 2.1268 44 1 7.0335 -8.8615 4.7022 45 1 5.9538 -8.6475 3.3034 46 1 6.5516 -10.2699 3.7263 47 1 10.0080 -9.4984 2.7268 48 1 9.3148 -9.4839 4.3663 49 1 11.6385 -12.3401 4.4091 50 1 6.0985 -2.8781 -1.6046 51 1 4.1517 -1.7972 -2.6374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905567432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:26 Heat of formation + Delta-G solvation = -77.464199 kcal Electronic energy + Delta-G solvation = -27677.278966 eV Core-core repulsion = 23768.725138 eV Total energy + Delta-G solvation = -3908.553828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11461 -39.65229 -38.94234 -37.28228 -35.91139 -34.60111 -34.11938 -32.41232 -31.76895 -30.58068 -29.02372 -27.93184 -27.30336 -25.99464 -24.46116 -23.03232 -22.70015 -22.63956 -21.96787 -21.58066 -18.55703 -18.47854 -17.92578 -17.49492 -17.05762 -16.78284 -16.58198 -16.16899 -15.90261 -15.89508 -15.67477 -15.19768 -15.08841 -14.84654 -14.52716 -14.24969 -14.07888 -14.02310 -13.82220 -13.63425 -13.37055 -13.32033 -13.19656 -12.93761 -12.86850 -12.65610 -12.57028 -12.51483 -12.43565 -12.37286 -12.06189 -11.98049 -11.73386 -11.60355 -11.57454 -11.38933 -10.63097 -10.60833 -9.85012 -9.35191 -9.00585 -8.93673 -8.20237 -6.30167 0.30797 0.37024 1.41336 1.44699 1.52609 2.26682 2.40703 2.62048 3.07761 3.12474 3.41378 3.52904 3.60008 3.76220 3.88771 3.92515 3.98016 4.02975 4.14868 4.22071 4.25382 4.34356 4.41408 4.45070 4.51516 4.55833 4.65236 4.67851 4.71298 4.72968 4.73772 4.74440 4.80478 4.91669 4.97380 5.07070 5.15532 5.16666 5.19412 5.21019 5.28990 5.32451 5.41309 5.63719 5.65096 5.69995 6.01236 6.06907 6.24187 6.33241 6.41098 6.65516 6.85784 7.08046 7.39580 8.90392 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.001587 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.198479 B =17637.000725 C =17896.663761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.095 0.905 4 C -0.102 4.102 5 C -0.186 4.186 6 C -0.069 4.069 7 C -0.113 4.113 8 C 0.108 3.892 9 N -0.682 5.682 10 C 0.039 3.961 11 C 0.129 3.871 12 H 0.089 0.911 13 O -0.554 6.554 14 C 0.024 3.976 15 N -0.539 5.539 16 C 0.042 3.958 17 C 0.208 3.792 18 C -0.526 4.526 19 H 0.060 0.940 20 C 0.002 3.998 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.268 1.268 26 C -0.068 4.068 27 C -0.152 4.152 28 C 0.083 3.917 29 O -0.326 6.326 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.342 0.658 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.378 0.622 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.010 0.990 45 H 0.076 0.924 46 H 0.053 0.947 47 H 0.005 0.995 48 H -0.039 1.039 49 H 0.264 0.736 50 H 0.143 0.857 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.060 28.382 -6.169 33.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 H 0.113 0.887 4 C -0.139 4.139 5 C -0.187 4.187 6 C -0.087 4.087 7 C -0.114 4.114 8 C -0.020 4.020 9 N -0.313 5.313 10 C -0.091 4.091 11 C 0.069 3.931 12 H 0.107 0.893 13 O -0.360 6.360 14 C -0.106 4.106 15 N -0.263 5.263 16 C -0.106 4.106 17 C 0.081 3.919 18 C -0.564 4.564 19 H 0.078 0.922 20 C -0.196 4.196 21 N -0.575 5.575 22 Si 0.794 3.206 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.193 1.193 26 C -0.086 4.086 27 C -0.171 4.171 28 C 0.037 3.963 29 O -0.241 6.241 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.155 0.845 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.160 0.840 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.226 0.774 42 H 0.050 0.950 43 H 0.087 0.913 44 H 0.028 0.972 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.023 0.977 48 H -0.021 1.021 49 H 0.073 0.927 50 H 0.160 0.840 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.540 27.869 -7.182 33.704 hybrid contribution 1.032 -0.298 1.688 2.001 sum -16.508 27.571 -5.494 32.602 Atomic orbital electron populations 1.21912 0.90652 1.03479 1.04299 1.23665 0.96939 0.95498 0.82560 0.88686 1.21935 0.93794 0.99501 0.98679 1.21034 0.98528 1.05234 0.93855 1.20394 0.91683 0.96210 1.00441 1.19745 0.97231 1.00754 0.93680 1.20789 0.95201 0.86626 0.99403 1.60394 1.05295 1.09724 1.55895 1.22546 0.94613 0.93460 0.98488 1.21734 0.97209 0.89831 0.84324 0.89349 1.86556 1.41834 1.81737 1.25843 1.22838 0.99448 0.88981 0.99287 1.61924 1.06119 1.08040 1.50248 1.22203 0.93443 1.01715 0.93285 1.19400 0.88190 0.93199 0.91082 1.21454 1.01938 0.91814 1.41182 0.92171 1.25898 0.94697 1.04225 0.94754 1.70072 1.07281 1.36316 1.43792 0.85442 0.77693 0.78705 0.78806 1.19445 1.20685 1.19319 1.20946 0.97015 0.95976 0.94694 1.20481 0.92663 1.03599 1.00341 1.19837 0.87290 0.95456 0.93682 1.86825 1.34593 1.63136 1.39525 0.92091 0.87921 0.91288 0.88591 0.87207 0.84497 0.93465 0.89634 0.84023 0.93498 0.89830 0.77415 0.94968 0.91270 0.97182 0.90558 0.92835 0.97712 1.02132 0.92681 0.83964 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.60 71.98 0.69 -0.50 16 2 C 0.07 0.85 4.26 31.18 0.13 0.98 16 3 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.10 -1.20 6.65 30.73 0.20 -1.00 16 5 C -0.19 -3.27 6.27 -19.53 -0.12 -3.39 16 6 C -0.07 -1.14 9.70 22.18 0.22 -0.92 16 7 C -0.11 -1.97 5.40 -19.83 -0.11 -2.08 16 8 C 0.11 1.71 5.82 85.55 0.50 2.20 16 9 N -0.68 -13.12 6.44 -517.95 -3.34 -16.45 16 10 C 0.04 0.78 5.32 86.30 0.46 1.24 16 11 C 0.13 3.48 3.02 30.59 0.09 3.57 16 12 H 0.09 2.43 6.47 -2.39 -0.02 2.41 16 13 O -0.55 -17.11 13.15 -148.98 -1.96 -19.07 16 14 C 0.02 0.80 4.62 86.30 0.40 1.20 16 15 N -0.54 -23.54 4.62 -927.03 -4.28 -27.82 16 16 C 0.04 1.65 9.16 127.69 1.17 2.82 16 17 C 0.21 11.22 4.72 85.56 0.40 11.62 16 18 C -0.53 -30.45 8.52 25.60 0.22 -30.23 16 19 H 0.06 3.45 7.10 -2.91 -0.02 3.43 16 20 C 0.00 0.13 5.46 84.65 0.46 0.59 16 21 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 22 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C -0.07 -1.23 9.68 22.21 0.21 -1.02 16 27 C -0.15 -2.98 10.06 22.45 0.23 -2.75 16 28 C 0.08 1.71 7.03 22.68 0.16 1.87 16 29 O -0.33 -6.60 10.81 -95.09 -1.03 -7.63 16 30 H 0.06 0.59 8.11 -2.39 -0.02 0.57 16 31 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.10 1.03 7.90 -2.38 -0.02 1.01 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.05 0.65 8.09 -2.38 -0.02 0.63 16 37 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 38 H 0.34 6.55 8.72 -89.69 -0.78 5.77 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.38 9.81 9.04 -74.06 -0.67 9.14 16 42 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 43 H 0.07 2.33 7.93 -2.39 -0.02 2.31 16 44 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.08 2.54 6.30 -2.39 -0.02 2.52 16 46 H 0.05 2.30 6.86 -2.39 -0.02 2.29 16 47 H 0.00 0.28 7.93 -2.38 -0.02 0.26 16 48 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 49 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 50 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 51 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -71.12 412.72 -3.51 -74.63 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.53 Total: 21.50 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 5.32 Total: -15.79 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -7.33 Total: -100.58 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -2.99 Total: -26.70 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -71.12 -3.51 -74.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905567432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.837 kcal (2) G-P(sol) polarization free energy of solvation -71.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds