Wall clock time and date at job start Tue Mar 31 2020 20:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.39816 * 2 1 4 4 C 1.55018 * 110.35120 * 122.25927 * 2 1 3 5 5 C 1.54538 * 101.52432 * 155.24952 * 4 2 1 6 6 C 1.53680 * 103.64352 * 325.16363 * 5 4 2 7 7 N 1.47181 * 107.11214 * 21.55637 * 6 5 4 8 8 C 1.34774 * 125.66260 * 181.48180 * 7 6 5 9 9 O 1.21749 * 119.99734 * 185.16989 * 8 7 6 10 10 C 1.41796 * 120.00209 * 5.17595 * 8 7 6 11 11 C 1.33451 * 118.78878 * 75.39148 * 10 8 7 12 12 O 1.34345 * 123.08257 * 180.11703 * 11 10 8 13 13 C 1.45362 * 117.54266 * 344.21777 * 12 11 10 14 14 C 1.53474 * 108.26446 * 47.22686 * 13 12 11 15 15 C 1.50420 * 118.78197 * 255.66087 * 10 8 7 16 16 C 1.52271 * 110.17145 * 83.59863 * 5 4 2 17 17 C 1.53316 * 109.42154 * 62.84593 * 16 5 4 18 18 N 1.46937 * 108.70289 * 53.52663 * 17 16 5 19 19 C 1.36941 * 120.56673 * 125.76324 * 18 17 16 20 20 H 1.08000 * 119.99839 * 328.77190 * 19 18 17 21 21 C 1.38810 * 119.99699 * 148.76091 * 19 18 17 22 22 N 1.31623 * 120.00277 * 350.24038 * 21 19 18 23 23 Si 1.86798 * 119.99815 * 170.22719 * 21 19 18 24 24 H 1.48506 * 109.47182 * 180.02562 * 23 21 19 25 25 H 1.48491 * 109.47550 * 300.01036 * 23 21 19 26 26 H 1.48508 * 109.46940 * 60.00825 * 23 21 19 27 27 C 1.46929 * 118.86084 * 306.03449 * 18 17 16 28 28 C 1.52276 * 110.17010 * 206.72966 * 5 4 2 29 29 H 1.08989 * 109.47594 * 297.73677 * 1 2 3 30 30 H 1.08996 * 109.46995 * 57.74796 * 1 2 3 31 31 H 1.09006 * 109.46502 * 177.73908 * 1 2 3 32 32 H 1.08996 * 111.01959 * 37.18417 * 4 2 1 33 33 H 1.09000 * 111.01543 * 273.30579 * 4 2 1 34 34 H 1.09008 * 109.90531 * 140.91758 * 6 5 4 35 35 H 1.08994 * 109.91481 * 262.18136 * 6 5 4 36 36 H 1.08008 * 118.46072 * 0.38956 * 11 10 8 37 37 H 1.08994 * 109.70332 * 287.52959 * 13 12 11 38 38 H 1.09006 * 109.73528 * 166.94010 * 13 12 11 39 39 H 1.08998 * 109.70929 * 177.61096 * 14 13 12 40 40 H 1.09001 * 109.74161 * 57.00935 * 14 13 12 41 41 H 1.09004 * 109.45181 * 282.35312 * 15 10 8 42 42 H 1.08995 * 109.45797 * 42.32148 * 15 10 8 43 43 H 1.09010 * 109.47580 * 302.86256 * 16 5 4 44 44 H 1.08993 * 109.48069 * 182.83777 * 16 5 4 45 45 H 1.08992 * 109.59834 * 293.75990 * 17 16 5 46 46 H 1.08998 * 109.72053 * 173.36746 * 17 16 5 47 47 H 0.97002 * 119.99791 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.59382 * 173.73386 * 27 18 17 49 49 H 1.08997 * 109.59544 * 294.20010 * 27 18 17 50 50 H 1.09000 * 109.48181 * 57.13450 * 28 5 4 51 51 H 1.08996 * 109.48085 * 177.16561 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9099 1.0216 0.0000 4 6 2.0691 -0.7758 1.2291 5 6 3.4658 -1.2111 0.7311 6 6 3.2494 -1.4790 -0.7666 7 7 2.0431 -0.7381 -1.1692 8 6 1.4980 -0.7344 -2.4018 9 8 0.5510 -0.0094 -2.6465 10 6 2.0274 -1.5749 -3.4137 11 6 1.7576 -2.8811 -3.3704 12 8 2.2158 -3.7552 -4.2820 13 6 2.7332 -3.2165 -5.5290 14 6 3.6842 -2.0592 -5.1952 15 6 2.8774 -0.9622 -4.4929 16 6 4.4707 -0.0856 0.9361 17 6 4.6063 0.2102 2.4343 18 7 4.9211 -1.0422 3.1352 19 6 6.0190 -1.1277 3.9492 20 1 6.9002 -0.5428 3.7305 21 6 5.9992 -1.9659 5.0555 22 7 4.8716 -2.5296 5.4340 23 14 7.5729 -2.2943 6.0068 24 1 7.2861 -3.2159 7.1353 25 1 8.5765 -2.9141 5.1047 26 1 8.1075 -1.0139 6.5364 27 6 4.0412 -2.2030 2.9430 28 6 3.9058 -2.4814 1.4463 29 1 -0.3634 0.4782 0.9095 30 1 -0.3633 0.5484 -0.8691 31 1 -0.3632 -1.0270 -0.0405 32 1 1.4451 -1.6419 1.4492 33 1 2.1501 -0.1233 2.0984 34 1 4.1094 -1.1249 -1.3351 35 1 3.1034 -2.5459 -0.9356 36 1 1.1383 -3.2525 -2.5672 37 1 1.9091 -2.8502 -6.1411 38 1 3.2748 -3.9933 -6.0689 39 1 4.1194 -1.6645 -6.1133 40 1 4.4765 -2.4124 -4.5352 41 1 2.2370 -0.4613 -5.2189 42 1 3.5601 -0.2372 -4.0496 43 1 4.1247 0.8093 0.4187 44 1 5.4390 -0.3855 0.5356 45 1 3.6681 0.6154 2.8133 46 1 5.4077 0.9311 2.5958 47 1 4.8579 -3.1156 6.2069 48 1 4.4714 -3.0738 3.4378 49 1 3.0580 -1.9899 3.3626 50 1 3.1643 -3.2641 1.2863 51 1 4.8684 -2.8062 1.0512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086909479.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:47 Heat of formation + Delta-G solvation = -37.619481 kcal Electronic energy + Delta-G solvation = -30750.592510 eV Core-core repulsion = 26843.766479 eV Total energy + Delta-G solvation = -3906.826032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.96698 -39.92020 -38.42576 -35.90938 -34.35151 -33.09782 -32.53642 -31.07232 -30.71474 -29.90587 -27.14396 -26.10400 -25.89736 -24.63561 -23.90223 -22.60895 -21.94688 -20.91306 -20.00003 -18.63702 -18.10682 -17.37874 -16.90714 -16.65895 -16.31929 -15.72362 -14.96234 -14.86834 -14.58355 -14.29804 -14.00730 -13.86027 -13.75914 -13.50729 -13.33604 -13.31673 -13.02855 -12.98494 -12.73756 -12.52973 -12.17474 -11.90388 -11.69528 -11.57149 -11.43992 -11.21710 -11.11435 -10.93883 -10.91561 -10.74014 -10.66251 -10.47290 -10.25053 -10.08165 -9.84940 -9.61950 -9.50099 -9.37568 -8.63079 -8.51250 -8.44256 -6.60442 -5.78581 -3.26689 1.62561 2.60059 2.99743 3.28664 3.37144 3.42715 3.43420 4.33139 4.40582 4.48029 4.60313 4.70959 4.75786 4.89788 4.95665 5.08954 5.13323 5.16141 5.27759 5.31446 5.38987 5.40685 5.48445 5.53683 5.62732 5.72713 5.75134 5.77056 5.83339 5.90602 5.93694 5.97916 6.07398 6.11583 6.18310 6.27352 6.33864 6.38310 6.52366 6.58845 6.66267 6.67253 6.76658 6.85861 6.98322 7.03038 7.39005 7.65648 7.70625 7.78298 8.24365 8.48167 9.22882 9.84243 10.42052 11.29048 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017002 B = 0.003078 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.431026 B = 9094.714804 C = 9895.734437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.056 4.056 6 C 0.112 3.888 7 N -0.607 5.607 8 C 0.588 3.412 9 O -0.545 6.545 10 C -0.286 4.286 11 C 0.109 3.891 12 O -0.313 6.313 13 C 0.056 3.944 14 C -0.157 4.157 15 C -0.058 4.058 16 C -0.119 4.119 17 C 0.146 3.854 18 N -0.591 5.591 19 C -0.253 4.253 20 H 0.062 0.938 21 C 0.005 3.995 22 N -0.905 5.905 23 Si 0.904 3.096 24 H -0.290 1.290 25 H -0.284 1.284 26 H -0.283 1.283 27 C 0.173 3.827 28 C -0.126 4.126 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.162 0.838 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.020 0.980 46 H 0.052 0.948 47 H 0.254 0.746 48 H 0.090 0.910 49 H 0.019 0.981 50 H 0.050 0.950 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 -0.117 -19.472 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.056 4.056 6 C -0.011 4.011 7 N -0.341 5.341 8 C 0.378 3.622 9 O -0.424 6.424 10 C -0.291 4.291 11 C 0.043 3.957 12 O -0.225 6.225 13 C -0.019 4.019 14 C -0.194 4.194 15 C -0.096 4.096 16 C -0.158 4.158 17 C 0.020 3.980 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.080 0.920 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.734 3.266 24 H -0.216 1.216 25 H -0.210 1.210 26 H -0.209 1.209 27 C 0.048 3.952 28 C -0.166 4.166 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.179 0.821 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.108 0.892 49 H 0.037 0.963 50 H 0.068 0.932 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.643 -0.058 -19.512 20.312 hybrid contribution 0.906 -0.002 0.496 1.033 sum -4.737 -0.061 -19.016 19.598 Atomic orbital electron populations 1.22098 0.94360 1.02384 1.02983 1.21988 0.94618 0.95699 0.84701 0.90897 1.22949 0.95533 1.00401 0.96671 1.20957 0.95292 0.97742 0.91649 1.22198 0.86555 0.95981 0.96342 1.48837 1.28183 1.47918 1.09120 1.16363 0.82538 0.82458 0.80864 1.90772 1.28586 1.42152 1.80915 1.20018 1.10883 0.95011 1.03169 1.22411 0.93255 0.88323 0.91665 1.86235 1.74864 1.34665 1.26766 1.23481 0.97275 0.97334 0.83771 1.22196 0.98664 0.96389 1.02171 1.20086 0.96900 0.97352 0.95220 1.21920 0.97846 0.96206 0.99834 1.20951 0.97876 0.89800 0.89413 1.43978 1.29202 1.05798 1.52396 1.19134 0.91507 1.24844 1.02765 0.91986 1.25148 0.96597 1.01210 0.96431 1.69951 1.24176 1.34141 1.26687 0.86355 0.83014 0.77837 0.79410 1.21623 1.21027 1.20913 1.20712 0.93398 0.92382 0.88745 1.22050 0.99829 0.94026 1.00671 0.91995 0.90274 0.92958 0.90850 0.89081 0.91775 0.91682 0.82071 0.91096 0.87503 0.89580 0.90151 0.90578 0.90438 0.93178 0.92198 0.96249 0.92911 0.93576 0.89235 0.96324 0.93151 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.66 37.16 0.32 -1.85 16 2 C 0.13 1.86 3.42 -66.33 -0.23 1.63 16 3 H 0.07 1.05 7.74 -51.93 -0.40 0.64 16 4 C -0.12 -1.75 4.35 -24.86 -0.11 -1.86 16 5 C -0.06 -0.86 0.55 -154.09 -0.09 -0.94 16 6 C 0.11 1.50 5.59 -3.32 -0.02 1.48 16 7 N -0.61 -8.42 3.25 -166.53 -0.54 -8.96 16 8 C 0.59 8.49 6.52 -14.90 -0.10 8.39 16 9 O -0.55 -9.48 14.96 5.15 0.08 -9.41 16 10 C -0.29 -3.39 4.58 -105.07 -0.48 -3.87 16 11 C 0.11 1.19 10.11 29.06 0.29 1.48 16 12 O -0.31 -3.18 10.47 -14.88 -0.16 -3.33 16 13 C 0.06 0.40 7.15 37.40 0.27 0.66 16 14 C -0.16 -1.12 6.23 -26.37 -0.16 -1.29 16 15 C -0.06 -0.56 5.89 -27.91 -0.16 -0.73 16 16 C -0.12 -1.94 4.74 -26.94 -0.13 -2.07 16 17 C 0.15 2.90 6.19 -3.64 -0.02 2.88 16 18 N -0.59 -14.13 2.98 -172.45 -0.51 -14.65 16 19 C -0.25 -6.74 9.58 -15.06 -0.14 -6.88 16 20 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 21 C 0.00 0.13 5.07 -17.43 -0.09 0.04 16 22 N -0.91 -25.57 10.99 55.49 0.61 -24.96 16 23 Si 0.90 21.30 29.56 -169.99 -5.03 16.27 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.17 3.90 4.95 -3.89 -0.02 3.88 16 28 C -0.13 -2.23 4.70 -27.18 -0.13 -2.35 16 29 H 0.06 0.75 8.14 -51.94 -0.42 0.33 16 30 H 0.08 1.19 6.12 -51.93 -0.32 0.87 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.10 7.92 -51.93 -0.41 0.68 16 33 H 0.09 1.47 6.08 -51.93 -0.32 1.15 16 34 H 0.06 0.84 7.83 -51.92 -0.41 0.43 16 35 H 0.06 0.84 7.39 -51.93 -0.38 0.45 16 36 H 0.16 1.64 7.98 -52.48 -0.42 1.22 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.75 7.47 -51.92 -0.39 0.36 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.39 6.47 -51.93 -0.34 0.06 16 46 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 48 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 49 H 0.02 0.44 7.56 -51.93 -0.39 0.05 16 50 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -30.49 384.05 -9.45 -39.93 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.69 Total: 0.71 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -0.99 Total: -1.40 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.45 Total: -48.56 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.08 Total: -12.74 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.49 -9.45 -39.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086909479.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.314 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds