Wall clock time and date at job start Tue Mar 31 2020 20:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.39816 * 2 1 4 4 C 1.55018 * 110.35120 * 122.25927 * 2 1 3 5 5 C 1.54538 * 101.52432 * 155.24952 * 4 2 1 6 6 C 1.53680 * 103.64352 * 325.16363 * 5 4 2 7 7 N 1.47181 * 107.11214 * 21.55637 * 6 5 4 8 8 C 1.34774 * 125.66260 * 181.48180 * 7 6 5 9 9 O 1.21749 * 119.99734 * 185.16989 * 8 7 6 10 10 C 1.41796 * 120.00209 * 5.17595 * 8 7 6 11 11 C 1.33451 * 118.78878 * 75.39148 * 10 8 7 12 12 O 1.34345 * 123.08257 * 180.11703 * 11 10 8 13 13 C 1.45362 * 117.54266 * 344.21777 * 12 11 10 14 14 C 1.53474 * 108.26446 * 47.22686 * 13 12 11 15 15 C 1.50420 * 118.78197 * 255.66087 * 10 8 7 16 16 C 1.52271 * 110.17145 * 83.59863 * 5 4 2 17 17 C 1.53316 * 109.42154 * 62.84593 * 16 5 4 18 18 N 1.46937 * 108.70289 * 53.52663 * 17 16 5 19 19 C 1.36941 * 120.56673 * 125.76324 * 18 17 16 20 20 H 1.08000 * 119.99839 * 328.77190 * 19 18 17 21 21 C 1.38810 * 119.99699 * 148.76091 * 19 18 17 22 22 N 1.31623 * 120.00277 * 350.24038 * 21 19 18 23 23 Si 1.86798 * 119.99815 * 170.22719 * 21 19 18 24 24 H 1.48506 * 109.47182 * 180.02562 * 23 21 19 25 25 H 1.48491 * 109.47550 * 300.01036 * 23 21 19 26 26 H 1.48508 * 109.46940 * 60.00825 * 23 21 19 27 27 C 1.46929 * 118.86084 * 306.03449 * 18 17 16 28 28 C 1.52276 * 110.17010 * 206.72966 * 5 4 2 29 29 H 1.08989 * 109.47594 * 297.73677 * 1 2 3 30 30 H 1.08996 * 109.46995 * 57.74796 * 1 2 3 31 31 H 1.09006 * 109.46502 * 177.73908 * 1 2 3 32 32 H 1.08996 * 111.01959 * 37.18417 * 4 2 1 33 33 H 1.09000 * 111.01543 * 273.30579 * 4 2 1 34 34 H 1.09008 * 109.90531 * 140.91758 * 6 5 4 35 35 H 1.08994 * 109.91481 * 262.18136 * 6 5 4 36 36 H 1.08008 * 118.46072 * 0.38956 * 11 10 8 37 37 H 1.08994 * 109.70332 * 287.52959 * 13 12 11 38 38 H 1.09006 * 109.73528 * 166.94010 * 13 12 11 39 39 H 1.08998 * 109.70929 * 177.61096 * 14 13 12 40 40 H 1.09001 * 109.74161 * 57.00935 * 14 13 12 41 41 H 1.09004 * 109.45181 * 282.35312 * 15 10 8 42 42 H 1.08995 * 109.45797 * 42.32148 * 15 10 8 43 43 H 1.09010 * 109.47580 * 302.86256 * 16 5 4 44 44 H 1.08993 * 109.48069 * 182.83777 * 16 5 4 45 45 H 1.08992 * 109.59834 * 293.75990 * 17 16 5 46 46 H 1.08998 * 109.72053 * 173.36746 * 17 16 5 47 47 H 0.97002 * 119.99791 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.59382 * 173.73386 * 27 18 17 49 49 H 1.08997 * 109.59544 * 294.20010 * 27 18 17 50 50 H 1.09000 * 109.48181 * 57.13450 * 28 5 4 51 51 H 1.08996 * 109.48085 * 177.16561 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9099 1.0216 0.0000 4 6 2.0691 -0.7758 1.2291 5 6 3.4658 -1.2111 0.7311 6 6 3.2494 -1.4790 -0.7666 7 7 2.0431 -0.7381 -1.1692 8 6 1.4980 -0.7344 -2.4018 9 8 0.5510 -0.0094 -2.6465 10 6 2.0274 -1.5749 -3.4137 11 6 1.7576 -2.8811 -3.3704 12 8 2.2158 -3.7552 -4.2820 13 6 2.7332 -3.2165 -5.5290 14 6 3.6842 -2.0592 -5.1952 15 6 2.8774 -0.9622 -4.4929 16 6 4.4707 -0.0856 0.9361 17 6 4.6063 0.2102 2.4343 18 7 4.9211 -1.0422 3.1352 19 6 6.0190 -1.1277 3.9492 20 1 6.9002 -0.5428 3.7305 21 6 5.9992 -1.9659 5.0555 22 7 4.8716 -2.5296 5.4340 23 14 7.5729 -2.2943 6.0068 24 1 7.2861 -3.2159 7.1353 25 1 8.5765 -2.9141 5.1047 26 1 8.1075 -1.0139 6.5364 27 6 4.0412 -2.2030 2.9430 28 6 3.9058 -2.4814 1.4463 29 1 -0.3634 0.4782 0.9095 30 1 -0.3633 0.5484 -0.8691 31 1 -0.3632 -1.0270 -0.0405 32 1 1.4451 -1.6419 1.4492 33 1 2.1501 -0.1233 2.0984 34 1 4.1094 -1.1249 -1.3351 35 1 3.1034 -2.5459 -0.9356 36 1 1.1383 -3.2525 -2.5672 37 1 1.9091 -2.8502 -6.1411 38 1 3.2748 -3.9933 -6.0689 39 1 4.1194 -1.6645 -6.1133 40 1 4.4765 -2.4124 -4.5352 41 1 2.2370 -0.4613 -5.2189 42 1 3.5601 -0.2372 -4.0496 43 1 4.1247 0.8093 0.4187 44 1 5.4390 -0.3855 0.5356 45 1 3.6681 0.6154 2.8133 46 1 5.4077 0.9311 2.5958 47 1 4.8579 -3.1156 6.2069 48 1 4.4714 -3.0738 3.4378 49 1 3.0580 -1.9899 3.3626 50 1 3.1643 -3.2641 1.2863 51 1 4.8684 -2.8062 1.0512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086909479.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:46 Heat of formation + Delta-G solvation = -54.431805 kcal Electronic energy + Delta-G solvation = -30751.321547 eV Core-core repulsion = 26843.766479 eV Total energy + Delta-G solvation = -3907.555069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.02985 -40.86924 -39.64222 -37.43028 -35.13957 -34.75472 -33.42576 -32.67133 -31.79758 -31.53456 -28.68426 -27.18558 -26.76034 -25.85730 -25.20689 -24.01273 -23.11174 -22.54197 -20.96225 -19.67510 -19.43599 -18.44601 -18.25671 -17.72103 -17.55956 -16.80958 -16.49733 -16.02616 -15.69619 -15.55287 -15.23245 -15.13043 -15.03369 -14.77100 -14.61622 -14.36552 -14.15595 -14.07847 -13.92366 -13.71547 -13.44430 -13.13368 -13.07742 -12.97081 -12.81562 -12.56753 -12.37016 -12.32362 -12.12695 -12.07575 -11.85463 -11.78356 -11.73289 -11.61223 -11.41152 -11.07789 -10.99089 -10.66368 -10.47524 -9.65916 -9.41990 -8.55117 -7.82236 -5.32779 0.77483 1.49170 1.50234 1.54000 1.56927 2.08956 2.42762 2.53463 3.31276 3.47900 3.54470 3.73573 3.75538 3.80402 3.82447 3.98168 4.10355 4.19229 4.25995 4.28066 4.30866 4.35008 4.49204 4.51685 4.57043 4.64074 4.70114 4.74169 4.74481 4.75804 4.84233 4.91099 4.91914 4.97730 5.08566 5.13940 5.14301 5.20257 5.22633 5.24334 5.28109 5.31756 5.37107 5.45836 5.52718 5.60311 5.69748 5.87784 6.27995 6.46480 6.55575 7.13752 7.21733 7.92326 8.43712 9.22438 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017002 B = 0.003078 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.431026 B = 9094.714804 C = 9895.734437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.052 4.052 6 C 0.123 3.877 7 N -0.605 5.605 8 C 0.590 3.410 9 O -0.580 6.580 10 C -0.306 4.306 11 C 0.122 3.878 12 O -0.323 6.323 13 C 0.049 3.951 14 C -0.149 4.149 15 C -0.059 4.059 16 C -0.106 4.106 17 C 0.143 3.857 18 N -0.609 5.609 19 C -0.262 4.262 20 H 0.062 0.938 21 C -0.047 4.047 22 N -0.934 5.934 23 Si 0.965 3.035 24 H -0.295 1.295 25 H -0.277 1.277 26 H -0.278 1.278 27 C 0.182 3.818 28 C -0.112 4.112 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.165 0.835 37 H 0.078 0.922 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.019 0.981 46 H 0.048 0.952 47 H 0.249 0.751 48 H 0.052 0.948 49 H 0.000 1.000 50 H 0.068 0.932 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 -0.437 -21.660 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 H 0.091 0.909 4 C -0.149 4.149 5 C -0.053 4.053 6 C 0.001 3.999 7 N -0.338 5.338 8 C 0.382 3.618 9 O -0.461 6.461 10 C -0.310 4.310 11 C 0.055 3.945 12 O -0.234 6.234 13 C -0.025 4.025 14 C -0.186 4.186 15 C -0.096 4.096 16 C -0.145 4.145 17 C 0.018 3.982 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.080 0.920 21 C -0.243 4.243 22 N -0.580 5.580 23 Si 0.794 3.206 24 H -0.221 1.221 25 H -0.203 1.203 26 H -0.204 1.204 27 C 0.056 3.944 28 C -0.152 4.152 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.182 0.818 37 H 0.096 0.904 38 H 0.151 0.849 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.036 0.964 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.071 0.929 49 H 0.018 0.982 50 H 0.087 0.913 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.898 -0.369 -21.730 22.278 hybrid contribution 0.649 0.121 1.169 1.342 sum -4.249 -0.248 -20.561 20.997 Atomic orbital electron populations 1.22009 0.93960 1.02171 1.02910 1.21941 0.94926 0.95545 0.84413 0.90928 1.22830 0.95304 1.00214 0.96509 1.20845 0.95153 0.96208 0.93078 1.22050 0.86744 0.96683 0.94444 1.48858 1.28201 1.47746 1.09045 1.16726 0.81859 0.82139 0.81114 1.90759 1.30118 1.43800 1.81423 1.20013 1.12410 0.95106 1.03492 1.22452 0.92269 0.88008 0.91740 1.86230 1.74626 1.34971 1.27608 1.23794 0.97756 0.98235 0.82672 1.22178 0.98085 0.95503 1.02855 1.20125 0.96729 0.98048 0.94715 1.21757 0.98261 0.97423 0.97022 1.21073 0.97553 0.88231 0.91379 1.44227 1.28839 1.07565 1.52606 1.19453 0.92454 1.24369 1.03001 0.91987 1.25848 0.99281 1.01575 0.97549 1.70120 1.25945 1.34922 1.27019 0.85381 0.79786 0.77543 0.77929 1.22126 1.20339 1.20391 1.20476 0.91664 0.90638 0.91600 1.21825 1.00444 0.95755 0.97133 0.90757 0.91723 0.93090 0.90839 0.90470 0.90666 0.90521 0.81841 0.90399 0.84950 0.87154 0.90505 0.90846 0.90992 0.91132 0.92222 0.96354 0.93297 0.94201 0.92929 0.98239 0.91339 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 8.66 71.98 0.62 -3.38 16 2 C 0.13 3.60 3.42 45.50 0.16 3.76 16 3 H 0.07 1.97 7.74 -2.39 -0.02 1.96 16 4 C -0.11 -3.17 4.35 31.81 0.14 -3.03 16 5 C -0.05 -1.52 0.55 -51.91 -0.03 -1.54 16 6 C 0.12 3.00 5.59 86.48 0.48 3.48 16 7 N -0.61 -15.74 3.25 -798.97 -2.60 -18.34 16 8 C 0.59 16.28 6.52 85.12 0.56 16.83 16 9 O -0.58 -19.84 14.96 -4.50 -0.07 -19.91 16 10 C -0.31 -6.71 4.58 -20.16 -0.09 -6.80 16 11 C 0.12 2.40 10.11 66.74 0.67 3.07 16 12 O -0.32 -5.71 10.47 -76.14 -0.80 -6.51 16 13 C 0.05 0.54 7.15 72.14 0.52 1.06 16 14 C -0.15 -1.69 6.23 30.83 0.19 -1.50 16 15 C -0.06 -1.02 5.89 29.83 0.18 -0.84 16 16 C -0.11 -3.28 4.74 30.46 0.14 -3.13 16 17 C 0.14 5.64 6.19 86.40 0.53 6.17 16 18 N -0.61 -29.39 2.98 -699.51 -2.09 -31.47 16 19 C -0.26 -14.12 9.58 84.03 0.80 -13.32 16 20 H 0.06 3.27 7.85 -2.91 -0.02 3.24 16 21 C -0.05 -2.58 5.07 84.86 0.43 -2.15 16 22 N -0.93 -54.15 10.99 21.65 0.24 -53.91 16 23 Si 0.97 44.21 29.56 68.60 2.03 46.24 16 24 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 C 0.18 8.31 4.95 86.24 0.43 8.74 16 28 C -0.11 -3.85 4.70 30.30 0.14 -3.70 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.92 6.12 -2.39 -0.01 1.90 16 31 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.07 2.12 7.92 -2.39 -0.02 2.10 16 33 H 0.08 2.45 6.08 -2.39 -0.01 2.44 16 34 H 0.08 1.73 7.83 -2.38 -0.02 1.71 16 35 H 0.08 1.74 7.39 -2.39 -0.02 1.72 16 36 H 0.16 3.03 7.98 -2.91 -0.02 3.00 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.93 7.47 -2.38 -0.02 1.91 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.02 0.74 6.47 -2.39 -0.02 0.72 16 46 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 47 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 48 H 0.05 2.80 6.04 -2.39 -0.01 2.78 16 49 H 0.00 -0.02 7.56 -2.39 -0.02 -0.04 16 50 H 0.07 2.10 8.11 -2.39 -0.02 2.08 16 51 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -66.64 384.05 3.50 -63.14 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.90 Total: 17.06 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 5.88 Total: 3.70 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -4.44 Total: -103.72 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.86 Total: -26.42 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.64 3.50 -63.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086909479.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.704 kcal (2) G-P(sol) polarization free energy of solvation -66.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds