Wall clock time and date at job start Tue Mar 31 2020 20:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.99176 * 2 1 4 4 C 1.54472 * 109.98304 * 238.97737 * 2 1 3 5 5 C 1.54372 * 102.94664 * 219.35323 * 4 2 1 6 6 C 1.54136 * 102.48000 * 34.44777 * 5 4 2 7 7 N 1.47078 * 109.87724 * 121.08352 * 2 1 3 8 8 C 1.34776 * 125.63242 * 298.45517 * 7 2 1 9 9 O 1.21285 * 119.99935 * 4.96603 * 8 7 2 10 10 C 1.50697 * 120.00710 * 184.96621 * 8 7 2 11 11 C 1.53004 * 119.80647 * 294.44883 * 10 8 7 12 12 C 1.53005 * 60.64970 * 246.66482 * 11 10 8 13 13 H 1.08997 * 119.80797 * 112.30904 * 12 11 10 14 14 C 1.54485 * 118.06683 * 269.59127 * 12 11 10 15 15 O 1.44423 * 104.80068 * 38.86713 * 14 12 11 16 16 C 1.44425 * 105.27451 * 40.51734 * 15 14 12 17 17 C 1.52108 * 110.56543 * 152.40799 * 5 4 2 18 18 C 1.53348 * 109.44360 * 182.79315 * 17 5 4 19 19 N 1.46926 * 108.68496 * 306.69947 * 18 17 5 20 20 C 1.36939 * 120.54962 * 234.32563 * 19 18 17 21 21 H 1.08003 * 120.00122 * 35.22570 * 20 19 18 22 22 C 1.38822 * 119.99924 * 215.22348 * 20 19 18 23 23 N 1.31620 * 119.99767 * 15.22907 * 22 20 19 24 24 Si 1.86799 * 119.99839 * 195.22627 * 22 20 19 25 25 H 1.48497 * 109.46962 * 90.00360 * 24 22 20 26 26 H 1.48501 * 109.46850 * 210.00210 * 24 22 20 27 27 H 1.48500 * 109.47267 * 329.99931 * 24 22 20 28 28 C 1.46931 * 118.89976 * 54.34766 * 19 18 17 29 29 C 1.52109 * 110.54750 * 276.49560 * 5 4 2 30 30 H 1.09000 * 109.46544 * 300.37034 * 1 2 3 31 31 H 1.08996 * 109.47308 * 60.37267 * 1 2 3 32 32 H 1.09004 * 109.47154 * 180.37584 * 1 2 3 33 33 H 1.08996 * 110.86448 * 100.90508 * 4 2 1 34 34 H 1.09001 * 110.68589 * 337.71549 * 4 2 1 35 35 H 1.08999 * 110.37856 * 205.08768 * 6 5 4 36 36 H 1.08996 * 110.37970 * 82.73692 * 6 5 4 37 37 H 1.08998 * 117.42910 * 354.33773 * 11 10 8 38 38 H 1.08991 * 117.43326 * 138.99368 * 11 10 8 39 39 H 1.09003 * 110.36786 * 280.03921 * 14 12 11 40 40 H 1.08996 * 110.46354 * 157.74883 * 14 12 11 41 41 H 1.09000 * 110.36842 * 200.65326 * 16 15 14 42 42 H 1.08993 * 110.37696 * 78.31496 * 16 15 14 43 43 H 1.09000 * 109.46935 * 302.77970 * 17 5 4 44 44 H 1.08998 * 109.47727 * 62.79349 * 17 5 4 45 45 H 1.09000 * 109.59862 * 186.94194 * 18 17 5 46 46 H 1.08988 * 109.73559 * 66.53969 * 18 17 5 47 47 H 0.97001 * 119.99804 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.60787 * 185.89130 * 28 19 18 49 49 H 1.09001 * 109.73630 * 65.48337 * 28 19 18 50 50 H 1.08998 * 109.48107 * 297.18555 * 29 5 4 51 51 H 1.09003 * 109.47794 * 57.20242 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0580 -0.7482 -1.2441 5 6 3.2695 -1.5283 -0.6903 6 6 2.8123 -1.8833 0.7383 7 7 2.0301 -0.7141 1.1846 8 6 1.8063 -0.3622 2.4661 9 8 1.0680 0.5660 2.7200 10 6 2.4731 -1.1218 3.5838 11 6 2.1162 -2.5901 3.8243 12 6 1.7386 -1.5446 4.8756 13 1 0.6892 -1.3097 5.0536 14 6 2.7544 -1.2449 6.0003 15 8 4.0438 -1.2756 5.3506 16 6 3.8459 -0.6167 4.0808 17 6 3.5106 -2.7898 -1.5053 18 6 4.6734 -3.5792 -0.8921 19 7 5.8321 -2.6853 -0.7615 20 6 7.0405 -3.0279 -1.3071 21 1 7.0774 -3.5695 -2.2408 22 6 8.2182 -2.6788 -0.6602 23 7 8.1887 -2.2951 0.5985 24 14 9.8445 -2.7539 -1.5761 25 1 10.1064 -1.4454 -2.2277 26 1 10.9381 -3.0578 -0.6186 27 1 9.7817 -3.8180 -2.6099 28 6 5.6729 -1.4180 -0.0352 29 6 4.5043 -0.6410 -0.6535 30 1 -0.3632 0.5196 0.8867 31 1 -0.3634 0.5080 -0.8933 32 1 -0.3634 -1.0277 0.0067 33 1 2.3717 -0.0452 -2.0157 34 1 1.3028 -1.4322 -1.6312 35 1 3.6754 -2.0325 1.3870 36 1 2.1869 -2.7759 0.7260 37 1 1.3099 -3.0152 3.2266 38 1 2.9316 -3.2721 4.0648 39 1 2.7008 -2.0110 6.7739 40 1 2.5687 -0.2601 6.4290 41 1 4.6310 -0.9002 3.3798 42 1 3.8269 0.4649 4.2133 43 1 2.6104 -3.4044 -1.4984 44 1 3.7571 -2.5178 -2.5316 45 1 4.9291 -4.4169 -1.5411 46 1 4.3869 -3.9525 0.0910 47 1 9.0115 -2.0509 1.0504 48 1 6.5875 -0.8309 -0.1192 49 1 5.4630 -1.6196 1.0152 50 1 4.7651 -0.3387 -1.6677 51 1 4.2979 0.2444 -0.0520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086925399.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:30 Heat of formation + Delta-G solvation = -40.583894 kcal Electronic energy + Delta-G solvation = -31533.621814 eV Core-core repulsion = 27626.667236 eV Total energy + Delta-G solvation = -3906.954578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.19809 -41.10402 -39.42593 -37.47549 -35.59939 -34.77456 -32.91846 -32.43510 -31.62881 -29.89307 -28.71797 -27.07861 -26.80290 -26.04317 -24.74834 -23.83361 -22.73488 -21.90262 -21.40112 -20.10561 -19.51182 -18.42498 -18.32225 -17.43156 -16.96744 -16.82956 -16.60730 -16.38088 -15.77703 -15.53819 -15.33586 -15.20678 -14.99249 -14.78978 -14.52959 -14.23837 -13.97892 -13.86609 -13.76156 -13.46585 -13.30931 -13.08055 -12.98639 -12.96421 -12.87164 -12.60853 -12.52934 -12.33387 -12.28760 -12.01462 -11.86198 -11.80572 -11.66921 -11.43196 -11.26456 -11.05987 -10.91071 -10.71765 -10.69878 -10.50410 -9.68942 -8.51824 -7.83996 -5.36388 1.39458 1.46652 1.48404 1.56527 1.80393 2.33566 2.52403 2.78237 3.28131 3.29731 3.48195 3.51838 3.53931 3.73131 3.76078 3.80677 3.89117 4.05948 4.14196 4.24327 4.30135 4.30753 4.46089 4.52133 4.55923 4.58052 4.61103 4.64361 4.70294 4.74446 4.75053 4.76853 4.78829 4.83915 4.94743 4.97538 5.03239 5.07685 5.13712 5.24083 5.30946 5.34994 5.38245 5.45050 5.45730 5.53874 5.59824 5.70478 5.78273 6.44271 6.46266 7.04395 7.20715 7.90904 8.45222 9.20186 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.004441 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.352461 B = 6303.575131 C = 7947.316355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.130 3.870 3 H 0.060 0.940 4 C -0.107 4.107 5 C -0.054 4.054 6 C 0.117 3.883 7 N -0.600 5.600 8 C 0.578 3.422 9 O -0.572 6.572 10 C -0.222 4.222 11 C -0.106 4.106 12 C -0.149 4.149 13 H 0.140 0.860 14 C 0.065 3.935 15 O -0.384 6.384 16 C 0.096 3.904 17 C -0.104 4.104 18 C 0.139 3.861 19 N -0.605 5.605 20 C -0.264 4.264 21 H 0.062 0.938 22 C -0.041 4.041 23 N -0.930 5.930 24 Si 0.958 3.042 25 H -0.287 1.287 26 H -0.297 1.297 27 H -0.267 1.267 28 C 0.188 3.812 29 C -0.111 4.111 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.017 0.983 47 H 0.248 0.752 48 H 0.032 0.968 49 H 0.000 1.000 50 H 0.056 0.944 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.429 0.790 2.319 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.028 3.972 3 H 0.078 0.922 4 C -0.145 4.145 5 C -0.055 4.055 6 C -0.005 4.005 7 N -0.331 5.331 8 C 0.366 3.634 9 O -0.452 6.452 10 C -0.225 4.225 11 C -0.143 4.143 12 C -0.168 4.168 13 H 0.158 0.842 14 C -0.011 4.011 15 O -0.303 6.303 16 C 0.018 3.982 17 C -0.143 4.143 18 C 0.014 3.986 19 N -0.328 5.328 20 C -0.395 4.395 21 H 0.079 0.921 22 C -0.237 4.237 23 N -0.575 5.575 24 Si 0.787 3.213 25 H -0.214 1.214 26 H -0.224 1.224 27 H -0.191 1.191 28 C 0.063 3.937 29 C -0.150 4.150 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.141 0.859 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.035 0.965 47 H 0.057 0.943 48 H 0.050 0.950 49 H 0.018 0.982 50 H 0.074 0.926 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.493 1.247 2.701 17.744 hybrid contribution 1.425 0.415 -0.172 1.494 sum -16.069 1.663 2.530 16.351 Atomic orbital electron populations 1.22051 0.93611 1.02573 1.02650 1.21739 0.95216 0.95769 0.84524 0.92182 1.22763 0.96715 0.99426 0.95555 1.20895 0.94311 0.96281 0.94023 1.22403 0.94686 0.87816 0.95613 1.48598 1.51424 1.28554 1.04565 1.18834 0.80057 0.82572 0.81912 1.90638 1.39191 1.31562 1.83845 1.22896 0.99089 1.01200 0.99319 1.23030 1.03204 0.88906 0.99121 1.24311 1.00905 1.02562 0.89022 0.84205 1.23213 0.80030 1.03271 0.94545 1.89200 1.31289 1.79145 1.30633 1.22569 0.93706 0.96572 0.85318 1.21726 0.98697 0.95083 0.98786 1.21127 0.87598 0.92534 0.97333 1.44156 1.06904 1.17384 1.64376 1.19407 0.84179 1.34292 1.01588 0.92062 1.25890 1.01007 1.01428 0.95405 1.70159 1.27025 1.50184 1.10106 0.85412 0.79993 0.77991 0.77921 1.21423 1.22410 1.19114 1.20423 0.94802 0.86510 0.92008 1.21786 0.95484 0.97221 1.00553 0.93595 0.89690 0.91792 0.89168 0.88083 0.91817 0.89664 0.86079 0.87784 0.85922 0.90078 0.89808 0.91420 0.89164 0.91794 0.93021 0.96511 0.94306 0.94958 0.98191 0.92556 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.10 71.98 0.66 -2.47 16 2 C 0.13 3.11 3.14 45.38 0.14 3.25 16 3 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.11 -2.21 5.43 31.56 0.17 -2.04 16 5 C -0.05 -1.47 0.54 -51.92 -0.03 -1.50 16 6 C 0.12 3.16 4.27 86.56 0.37 3.53 16 7 N -0.60 -16.34 3.06 -788.78 -2.41 -18.75 16 8 C 0.58 17.46 7.24 87.66 0.63 18.10 16 9 O -0.57 -20.27 15.97 -3.05 -0.05 -20.31 16 10 C -0.22 -5.99 1.79 -51.91 -0.09 -6.08 16 11 C -0.11 -2.33 9.18 30.60 0.28 -2.05 16 12 C -0.15 -3.20 7.18 -9.78 -0.07 -3.27 16 13 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 14 C 0.07 1.37 7.53 72.49 0.55 1.91 16 15 O -0.38 -11.29 11.31 -148.98 -1.69 -12.97 16 16 C 0.10 2.89 7.27 72.49 0.53 3.42 16 17 C -0.10 -2.84 4.83 30.42 0.15 -2.69 16 18 C 0.14 5.18 6.24 86.41 0.54 5.72 16 19 N -0.60 -28.56 2.94 -698.47 -2.05 -30.61 16 20 C -0.26 -14.07 9.50 84.04 0.80 -13.28 16 21 H 0.06 3.20 7.87 -2.91 -0.02 3.18 16 22 C -0.04 -2.24 4.91 84.86 0.42 -1.83 16 23 N -0.93 -54.64 11.62 21.65 0.25 -54.39 16 24 Si 0.96 44.40 29.58 68.60 2.03 46.43 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 C 0.19 8.62 4.96 86.41 0.43 9.05 16 29 C -0.11 -3.88 4.83 30.42 0.15 -3.74 16 30 H 0.04 1.18 6.73 -2.39 -0.02 1.16 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.75 8.01 -2.39 -0.02 1.73 16 34 H 0.10 1.64 7.70 -2.39 -0.02 1.62 16 35 H 0.06 2.11 5.69 -2.39 -0.01 2.09 16 36 H 0.09 1.97 7.97 -2.39 -0.02 1.95 16 37 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.10 2.43 8.06 -2.39 -0.02 2.41 16 39 H 0.12 1.95 8.14 -2.39 -0.02 1.94 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 46 H 0.02 0.63 7.64 -2.39 -0.02 0.61 16 47 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 48 H 0.03 1.73 6.52 -2.38 -0.02 1.71 16 49 H 0.00 0.01 6.58 -2.39 -0.02 -0.01 16 50 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.05 1.68 7.85 -2.39 -0.02 1.66 16 Total: -1.00 -67.52 388.26 2.60 -64.92 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.90 Total: 19.66 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.61 Total: 6.04 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -4.21 Total: -103.76 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.73 Total: -33.29 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.52 2.60 -64.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086925399.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.335 kcal (2) G-P(sol) polarization free energy of solvation -67.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds