Wall clock time and date at job start Tue Mar 31 2020 19:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42897 * 109.46683 * 198.16518 * 3 2 1 5 5 C 1.42903 * 113.99683 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47076 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47279 * 179.97438 * 6 5 4 8 8 O 1.21285 * 120.00159 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00517 * 180.02562 * 7 6 5 10 10 C 1.46936 * 120.62897 * 359.97438 * 9 7 6 11 11 C 1.53191 * 108.77557 * 233.63541 * 10 9 7 12 12 C 1.53047 * 109.31162 * 305.36188 * 11 10 9 13 13 C 1.53038 * 109.53692 * 61.36469 * 12 11 10 14 14 H 1.08994 * 109.52454 * 58.60580 * 13 12 11 15 15 C 1.53001 * 109.49884 * 178.68408 * 13 12 11 16 16 H 1.09004 * 109.99868 * 304.93278 * 15 13 12 17 17 C 1.54330 * 109.99647 * 183.88957 * 15 13 12 18 18 C 1.55151 * 103.02344 * 218.66781 * 17 15 13 19 19 C 1.54914 * 101.58266 * 35.30508 * 18 17 15 20 20 N 1.47020 * 109.88034 * 66.02005 * 15 13 12 21 21 C 1.36940 * 125.65379 * 298.39889 * 20 15 13 22 22 H 1.08009 * 119.99147 * 334.68480 * 21 20 15 23 23 C 1.38808 * 120.00566 * 154.68632 * 21 20 15 24 24 N 1.31623 * 119.99818 * 334.42905 * 23 21 20 25 25 Si 1.86797 * 120.00053 * 154.43034 * 23 21 20 26 26 H 1.48502 * 109.47351 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46991 * 239.99701 * 25 23 21 28 28 H 1.48506 * 109.46771 * 119.99792 * 25 23 21 29 29 C 1.46926 * 120.63686 * 180.02562 * 9 7 6 30 30 H 4.38448 * 5.44525 * 179.97438 * 4 1 2 31 31 H 1.08998 * 109.46569 * 78.16539 * 3 2 1 32 32 H 1.08993 * 109.47180 * 318.16472 * 3 2 1 33 33 H 1.08994 * 109.47485 * 59.99983 * 5 4 3 34 34 H 1.08998 * 109.46780 * 299.99510 * 5 4 3 35 35 H 1.09003 * 109.47324 * 60.00014 * 6 5 4 36 36 H 1.08998 * 109.47088 * 299.99533 * 6 5 4 37 37 H 1.09005 * 109.58223 * 353.41619 * 10 9 7 38 38 H 1.08999 * 109.58646 * 113.69777 * 10 9 7 39 39 H 1.08995 * 109.49976 * 65.30903 * 11 10 9 40 40 H 1.08994 * 109.49865 * 185.38184 * 11 10 9 41 41 H 1.09010 * 109.45844 * 301.34903 * 12 11 10 42 42 H 1.08999 * 109.46113 * 181.39157 * 12 11 10 43 43 H 1.08993 * 110.85380 * 100.19607 * 17 15 13 44 44 H 1.08999 * 110.66362 * 337.04901 * 17 15 13 45 45 H 1.08998 * 111.00679 * 277.23137 * 18 17 15 46 46 H 1.09004 * 111.04157 * 153.39263 * 18 17 15 47 47 H 1.08999 * 110.36824 * 204.15665 * 19 18 17 48 48 H 1.08995 * 110.36850 * 81.82976 * 19 18 17 49 49 H 0.96996 * 119.99481 * 354.29612 * 24 23 21 50 50 H 1.08999 * 109.58350 * 6.57811 * 29 9 7 51 51 H 1.09001 * 109.70473 * 246.22432 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.2810 0.4200 5 6 4.5462 1.3891 0.4547 6 6 4.9400 2.7940 0.9150 7 6 6.4422 2.9078 0.9521 8 8 7.1302 1.9585 0.6415 9 7 7.0213 4.0641 1.3315 10 6 6.2013 5.2228 1.7112 11 6 6.6401 6.4315 0.8785 12 6 8.1460 6.6441 1.0496 13 6 8.8978 5.4107 0.5440 14 1 8.6523 5.2388 -0.5040 15 6 10.4043 5.6374 0.6850 16 1 10.6928 6.5551 0.1723 17 6 11.1761 4.4413 0.0889 18 6 12.3585 4.2607 1.0770 19 6 11.6934 4.6246 2.4279 20 7 10.7657 5.7248 2.1074 21 6 10.3114 6.6681 2.9900 22 1 9.9844 7.6321 2.6290 23 6 10.2711 6.3855 4.3484 24 7 10.1711 5.1388 4.7585 25 14 10.3587 7.7745 5.5944 26 1 10.4661 9.0728 4.8816 27 1 11.5484 7.5860 6.4629 28 1 9.1304 7.7687 6.4291 29 6 8.4846 4.1906 1.3722 30 1 -1.0503 -0.0003 -0.0003 31 1 3.0093 -0.2099 -1.0058 32 1 3.0097 -0.7648 0.6854 33 1 4.9487 1.2075 -0.5418 34 1 4.9496 0.6524 1.1493 35 1 4.5375 2.9761 1.9114 36 1 4.5366 3.5305 0.2200 37 1 5.1509 5.0066 1.5161 38 1 6.3396 5.4367 2.7710 39 1 6.4154 6.2501 -0.1725 40 1 6.1061 7.3194 1.2168 41 1 8.3732 6.8008 2.1042 42 1 8.4566 7.5185 0.4777 43 1 11.5414 4.6748 -0.9111 44 1 10.5493 3.5498 0.0705 45 1 13.1712 4.9487 0.8438 46 1 12.7115 3.2294 1.0806 47 1 12.4451 4.9585 3.1431 48 1 11.1454 3.7695 2.8235 49 1 10.0424 4.4252 4.1142 50 1 8.9406 3.2935 0.9535 51 1 8.8137 4.3207 2.4031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120382750.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:20 Heat of formation + Delta-G solvation = -8.379037 kcal Electronic energy + Delta-G solvation = -30134.089081 eV Core-core repulsion = 26228.531011 eV Total energy + Delta-G solvation = -3905.558071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.13115 -38.63257 -38.02732 -36.35907 -33.74762 -32.93134 -32.71821 -31.58735 -30.79541 -29.08337 -27.46715 -26.84195 -25.29591 -24.43746 -23.19570 -22.60123 -20.69221 -20.00650 -19.20773 -18.73920 -18.38823 -17.56723 -17.18161 -16.59490 -16.21373 -15.72790 -15.25277 -15.22050 -14.65987 -14.27237 -14.01095 -13.89659 -13.66878 -13.62204 -13.12345 -13.04529 -12.81719 -12.78522 -12.36379 -11.96852 -11.81513 -11.74161 -11.69535 -11.35272 -11.32907 -10.88015 -10.79699 -10.71464 -10.68879 -10.60769 -10.35765 -10.24371 -10.11431 -9.86153 -9.82898 -9.80500 -9.59203 -9.48080 -9.40562 -8.45809 -8.15819 -6.87986 -6.05849 -3.21173 2.17398 2.49161 2.82210 3.17833 3.48321 3.51292 3.63624 3.71977 4.24813 4.54916 4.66240 4.89217 4.92410 4.98443 5.09633 5.10058 5.21904 5.26804 5.32686 5.33634 5.39804 5.50343 5.57458 5.61132 5.64754 5.68305 5.71062 5.80077 5.82087 5.92300 6.01923 6.18927 6.21749 6.27820 6.29267 6.37938 6.43597 6.56038 6.64578 6.66903 6.80493 6.85860 6.95405 7.00401 7.03051 7.12930 7.24590 7.30211 7.72963 7.88466 8.38627 8.49522 9.02723 9.79147 10.41509 11.21410 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.002843 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.351095 B = 9847.776537 C =10560.554020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.190 4.190 3 C 0.173 3.827 4 O -0.387 6.387 5 C 0.079 3.921 6 C -0.138 4.138 7 C 0.515 3.485 8 O -0.554 6.554 9 N -0.600 5.600 10 C 0.106 3.894 11 C -0.131 4.131 12 C -0.127 4.127 13 C -0.098 4.098 14 H 0.048 0.952 15 C 0.164 3.836 16 H 0.037 0.963 17 C -0.131 4.131 18 C -0.137 4.137 19 C 0.142 3.858 20 N -0.591 5.591 21 C -0.325 4.325 22 H 0.063 0.937 23 C -0.023 4.023 24 N -0.913 5.913 25 Si 1.065 2.935 26 H -0.293 1.293 27 H -0.291 1.291 28 H -0.295 1.295 29 C 0.122 3.878 30 H 0.222 0.778 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.045 0.955 48 H 0.026 0.974 49 H 0.270 0.730 50 H 0.078 0.922 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.992 -4.702 -9.875 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.190 4.190 3 C 0.097 3.903 4 O -0.307 6.307 5 C 0.003 3.997 6 C -0.178 4.178 7 C 0.303 3.697 8 O -0.433 6.433 9 N -0.332 5.332 10 C -0.017 4.017 11 C -0.169 4.169 12 C -0.164 4.164 13 C -0.119 4.119 14 H 0.066 0.934 15 C 0.057 3.943 16 H 0.054 0.946 17 C -0.169 4.169 18 C -0.175 4.175 19 C 0.016 3.984 20 N -0.317 5.317 21 C -0.453 4.453 22 H 0.080 0.920 23 C -0.226 4.226 24 N -0.554 5.554 25 Si 0.895 3.105 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.223 1.223 29 C 0.001 3.999 30 H 0.238 0.762 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.044 0.956 49 H 0.083 0.917 50 H 0.096 0.904 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.672 -4.604 -8.282 15.034 hybrid contribution -0.236 -0.389 -1.726 1.785 sum -11.908 -4.994 -10.008 16.337 Atomic orbital electron populations 1.24972 0.95883 0.98035 1.00713 1.22604 0.93940 1.01849 1.00630 1.19051 0.84559 0.86533 1.00127 1.87865 1.22001 1.31941 1.88843 1.22180 0.79375 0.96716 1.01464 1.21481 0.93420 0.98169 1.04736 1.20229 0.89693 0.82669 0.77129 1.90674 1.65257 1.37509 1.49858 1.48152 1.08309 1.11604 1.65088 1.21782 0.94033 0.85811 1.00038 1.21909 0.98690 0.97098 0.99227 1.21914 0.91879 0.96566 1.06039 1.21770 0.97928 0.95091 0.97121 0.93352 1.20998 0.90557 0.95059 0.87735 0.94570 1.22659 0.97474 0.98916 0.97894 1.22784 0.97236 0.99996 0.97529 1.21546 0.91984 0.91417 0.93421 1.44577 1.49838 1.32480 1.04779 1.19606 1.43912 0.92826 0.88925 0.91976 1.25729 0.99068 1.01287 0.96530 1.70737 1.46504 1.00323 1.37807 0.83525 0.76675 0.74563 0.75696 1.21876 1.21812 1.22259 1.21791 0.76959 0.98172 1.03017 0.76159 0.90674 0.90609 0.92069 0.91935 0.88101 0.88232 0.90525 0.90675 0.92777 0.91278 0.86966 0.93221 0.92308 0.91563 0.92060 0.92225 0.93621 0.95627 0.91733 0.90402 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 19.25 29.55 0.57 -0.97 16 2 C -0.19 -1.97 13.73 -37.12 -0.51 -2.48 16 3 C 0.17 1.67 6.41 34.37 0.22 1.89 16 4 O -0.39 -4.63 10.30 -35.23 -0.36 -4.99 16 5 C 0.08 0.94 5.23 37.16 0.19 1.14 16 6 C -0.14 -1.70 4.42 -27.88 -0.12 -1.82 16 7 C 0.52 8.43 7.70 -10.99 -0.08 8.34 16 8 O -0.55 -10.77 15.40 5.55 0.09 -10.69 16 9 N -0.60 -10.13 2.97 -172.79 -0.51 -10.64 16 10 C 0.11 1.53 6.34 -3.71 -0.02 1.50 16 11 C -0.13 -1.86 6.08 -26.61 -0.16 -2.02 16 12 C -0.13 -2.23 4.54 -26.69 -0.12 -2.36 16 13 C -0.10 -1.78 2.14 -90.53 -0.19 -1.98 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 15 C 0.16 3.21 2.95 -66.95 -0.20 3.01 16 16 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 17 C -0.13 -2.29 6.31 -24.90 -0.16 -2.44 16 18 C -0.14 -2.47 7.09 -24.58 -0.17 -2.64 16 19 C 0.14 3.16 5.52 -2.52 -0.01 3.15 16 20 N -0.59 -13.54 1.87 -162.56 -0.30 -13.84 16 21 C -0.32 -8.16 7.18 -15.06 -0.11 -8.27 16 22 H 0.06 1.58 7.09 -52.48 -0.37 1.21 16 23 C -0.02 -0.61 5.17 -17.43 -0.09 -0.70 16 24 N -0.91 -25.83 13.06 55.49 0.72 -25.10 16 25 Si 1.06 24.26 29.99 -169.99 -5.10 19.17 16 26 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 28 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 29 C 0.12 2.37 5.28 -3.74 -0.02 2.35 16 30 H 0.22 1.03 7.80 -54.08 -0.42 0.61 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.10 1.15 7.94 -51.93 -0.41 0.74 16 36 H 0.10 1.07 7.69 -51.93 -0.40 0.67 16 37 H 0.08 0.86 5.93 -51.93 -0.31 0.55 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.11 2.37 4.94 -51.92 -0.26 2.11 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 1.17 6.11 -51.93 -0.32 0.85 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.03 0.62 6.72 -51.93 -0.35 0.27 16 49 H 0.27 7.67 5.06 -40.82 -0.21 7.47 16 50 H 0.08 1.61 5.37 -51.93 -0.28 1.33 16 51 H 0.09 2.22 6.11 -51.93 -0.32 1.90 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -30.46 394.91 -8.86 -39.32 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.35 Total: 5.13 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.00 Total: -4.30 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.09 Total: -49.59 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.28 Total: -15.68 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.10 Total: 19.17 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.46 -8.86 -39.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120382750.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.939 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds