Wall clock time and date at job start Tue Mar 31 2020 19:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42897 * 109.46683 * 198.16518 * 3 2 1 5 5 C 1.42903 * 113.99683 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47076 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47279 * 179.97438 * 6 5 4 8 8 O 1.21285 * 120.00159 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00517 * 180.02562 * 7 6 5 10 10 C 1.46936 * 120.62897 * 359.97438 * 9 7 6 11 11 C 1.53191 * 108.77557 * 233.63541 * 10 9 7 12 12 C 1.53047 * 109.31162 * 305.36188 * 11 10 9 13 13 C 1.53038 * 109.53692 * 61.36469 * 12 11 10 14 14 H 1.08994 * 109.52454 * 58.60580 * 13 12 11 15 15 C 1.53001 * 109.49884 * 178.68408 * 13 12 11 16 16 H 1.09004 * 109.99868 * 304.93278 * 15 13 12 17 17 C 1.54330 * 109.99647 * 183.88957 * 15 13 12 18 18 C 1.55151 * 103.02344 * 218.66781 * 17 15 13 19 19 C 1.54914 * 101.58266 * 35.30508 * 18 17 15 20 20 N 1.47020 * 109.88034 * 66.02005 * 15 13 12 21 21 C 1.36940 * 125.65379 * 298.39889 * 20 15 13 22 22 H 1.08009 * 119.99147 * 334.68480 * 21 20 15 23 23 C 1.38808 * 120.00566 * 154.68632 * 21 20 15 24 24 N 1.31623 * 119.99818 * 334.42905 * 23 21 20 25 25 Si 1.86797 * 120.00053 * 154.43034 * 23 21 20 26 26 H 1.48502 * 109.47351 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46991 * 239.99701 * 25 23 21 28 28 H 1.48506 * 109.46771 * 119.99792 * 25 23 21 29 29 C 1.46926 * 120.63686 * 180.02562 * 9 7 6 30 30 H 4.38448 * 5.44525 * 179.97438 * 4 1 2 31 31 H 1.08998 * 109.46569 * 78.16539 * 3 2 1 32 32 H 1.08993 * 109.47180 * 318.16472 * 3 2 1 33 33 H 1.08994 * 109.47485 * 59.99983 * 5 4 3 34 34 H 1.08998 * 109.46780 * 299.99510 * 5 4 3 35 35 H 1.09003 * 109.47324 * 60.00014 * 6 5 4 36 36 H 1.08998 * 109.47088 * 299.99533 * 6 5 4 37 37 H 1.09005 * 109.58223 * 353.41619 * 10 9 7 38 38 H 1.08999 * 109.58646 * 113.69777 * 10 9 7 39 39 H 1.08995 * 109.49976 * 65.30903 * 11 10 9 40 40 H 1.08994 * 109.49865 * 185.38184 * 11 10 9 41 41 H 1.09010 * 109.45844 * 301.34903 * 12 11 10 42 42 H 1.08999 * 109.46113 * 181.39157 * 12 11 10 43 43 H 1.08993 * 110.85380 * 100.19607 * 17 15 13 44 44 H 1.08999 * 110.66362 * 337.04901 * 17 15 13 45 45 H 1.08998 * 111.00679 * 277.23137 * 18 17 15 46 46 H 1.09004 * 111.04157 * 153.39263 * 18 17 15 47 47 H 1.08999 * 110.36824 * 204.15665 * 19 18 17 48 48 H 1.08995 * 110.36850 * 81.82976 * 19 18 17 49 49 H 0.96996 * 119.99481 * 354.29612 * 24 23 21 50 50 H 1.08999 * 109.58350 * 6.57811 * 29 9 7 51 51 H 1.09001 * 109.70473 * 246.22432 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.2810 0.4200 5 6 4.5462 1.3891 0.4547 6 6 4.9400 2.7940 0.9150 7 6 6.4422 2.9078 0.9521 8 8 7.1302 1.9585 0.6415 9 7 7.0213 4.0641 1.3315 10 6 6.2013 5.2228 1.7112 11 6 6.6401 6.4315 0.8785 12 6 8.1460 6.6441 1.0496 13 6 8.8978 5.4107 0.5440 14 1 8.6523 5.2388 -0.5040 15 6 10.4043 5.6374 0.6850 16 1 10.6928 6.5551 0.1723 17 6 11.1761 4.4413 0.0889 18 6 12.3585 4.2607 1.0770 19 6 11.6934 4.6246 2.4279 20 7 10.7657 5.7248 2.1074 21 6 10.3114 6.6681 2.9900 22 1 9.9844 7.6321 2.6290 23 6 10.2711 6.3855 4.3484 24 7 10.1711 5.1388 4.7585 25 14 10.3587 7.7745 5.5944 26 1 10.4661 9.0728 4.8816 27 1 11.5484 7.5860 6.4629 28 1 9.1304 7.7687 6.4291 29 6 8.4846 4.1906 1.3722 30 1 -1.0503 -0.0003 -0.0003 31 1 3.0093 -0.2099 -1.0058 32 1 3.0097 -0.7648 0.6854 33 1 4.9487 1.2075 -0.5418 34 1 4.9496 0.6524 1.1493 35 1 4.5375 2.9761 1.9114 36 1 4.5366 3.5305 0.2200 37 1 5.1509 5.0066 1.5161 38 1 6.3396 5.4367 2.7710 39 1 6.4154 6.2501 -0.1725 40 1 6.1061 7.3194 1.2168 41 1 8.3732 6.8008 2.1042 42 1 8.4566 7.5185 0.4777 43 1 11.5414 4.6748 -0.9111 44 1 10.5493 3.5498 0.0705 45 1 13.1712 4.9487 0.8438 46 1 12.7115 3.2294 1.0806 47 1 12.4451 4.9585 3.1431 48 1 11.1454 3.7695 2.8235 49 1 10.0424 4.4252 4.1142 50 1 8.9406 3.2935 0.9535 51 1 8.8137 4.3207 2.4031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120382750.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:19 Heat of formation + Delta-G solvation = -24.819082 kcal Electronic energy + Delta-G solvation = -30134.801975 eV Core-core repulsion = 26228.531011 eV Total energy + Delta-G solvation = -3906.270965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49680 -40.02576 -39.05483 -37.78851 -34.79336 -34.51769 -34.10441 -32.70435 -32.08256 -30.89749 -28.71328 -27.94332 -26.62861 -26.21415 -24.41362 -23.93032 -22.29550 -21.48534 -20.68339 -19.96598 -19.37148 -19.13423 -18.50625 -17.51374 -17.42237 -17.04360 -16.42145 -16.30615 -15.99014 -15.78036 -15.58521 -15.35091 -15.13021 -15.06260 -14.51399 -14.43563 -14.15854 -13.74926 -13.64750 -13.46827 -13.45317 -12.99060 -12.89699 -12.74253 -12.59775 -12.50910 -12.31439 -12.03714 -11.89383 -11.87986 -11.76939 -11.55389 -11.53560 -11.47858 -11.34964 -11.22422 -11.02642 -10.84879 -10.60164 -10.38097 -9.63192 -8.82211 -8.10307 -5.23253 1.41410 1.53585 1.60460 1.67047 1.81209 1.81752 1.99411 2.68848 2.86937 3.32548 3.47495 3.54981 3.61601 3.78365 3.88363 3.96471 4.04514 4.07207 4.10891 4.18321 4.20620 4.26201 4.29316 4.38398 4.42052 4.44938 4.53658 4.65550 4.66714 4.71845 4.76479 4.79454 4.83236 4.91192 4.96709 5.01726 5.04949 5.09952 5.15435 5.17240 5.22087 5.29515 5.38779 5.48936 5.55354 5.77383 5.90919 6.02520 6.43170 6.47740 6.58560 7.05232 7.07732 7.82781 8.47213 9.15705 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.002843 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.351095 B = 9847.776537 C =10560.554020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.240 4.240 3 C 0.166 3.834 4 O -0.398 6.398 5 C 0.084 3.916 6 C -0.128 4.128 7 C 0.511 3.489 8 O -0.590 6.590 9 N -0.605 5.605 10 C 0.104 3.896 11 C -0.123 4.123 12 C -0.124 4.124 13 C -0.090 4.090 14 H 0.066 0.934 15 C 0.156 3.844 16 H 0.038 0.962 17 C -0.122 4.122 18 C -0.124 4.124 19 C 0.145 3.855 20 N -0.603 5.603 21 C -0.305 4.305 22 H 0.061 0.939 23 C -0.077 4.077 24 N -0.949 5.949 25 Si 1.108 2.892 26 H -0.272 1.272 27 H -0.298 1.298 28 H -0.295 1.295 29 C 0.136 3.864 30 H 0.255 0.745 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.015 0.985 48 H -0.003 1.003 49 H 0.257 0.743 50 H 0.061 0.939 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.032 -3.800 -12.116 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.240 4.240 3 C 0.091 3.909 4 O -0.318 6.318 5 C 0.008 3.992 6 C -0.167 4.167 7 C 0.301 3.699 8 O -0.472 6.472 9 N -0.336 5.336 10 C -0.018 4.018 11 C -0.161 4.161 12 C -0.162 4.162 13 C -0.111 4.111 14 H 0.084 0.916 15 C 0.049 3.951 16 H 0.056 0.944 17 C -0.160 4.160 18 C -0.162 4.162 19 C 0.020 3.980 20 N -0.328 5.328 21 C -0.434 4.434 22 H 0.078 0.922 23 C -0.274 4.274 24 N -0.593 5.593 25 Si 0.935 3.065 26 H -0.197 1.197 27 H -0.226 1.226 28 H -0.222 1.222 29 C 0.014 3.986 30 H 0.271 0.729 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.034 0.966 48 H 0.015 0.985 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.731 -3.677 -10.556 17.705 hybrid contribution 0.343 -0.705 -1.084 1.338 sum -13.388 -4.382 -11.640 18.273 Atomic orbital electron populations 1.25878 0.96788 0.96032 0.98898 1.23050 0.94795 1.03732 1.02422 1.19232 0.84744 0.85782 1.01127 1.87821 1.21559 1.33344 1.89107 1.22053 0.79667 0.96256 1.01250 1.21439 0.89862 0.99224 1.06203 1.20956 0.91376 0.81645 0.75920 1.90655 1.66525 1.38616 1.51375 1.48246 1.07349 1.12844 1.65181 1.21968 0.95791 0.85121 0.98933 1.21865 0.95991 0.97829 1.00367 1.21777 0.94696 0.96353 1.03341 1.21673 0.96971 0.94799 0.97658 0.91612 1.21195 0.92010 0.96150 0.85732 0.94396 1.22629 0.96630 0.97670 0.99069 1.22705 0.97480 1.01462 0.94585 1.21408 0.91123 0.90244 0.95268 1.44750 1.50107 1.32025 1.05910 1.19729 1.41588 0.92874 0.89232 0.92178 1.26794 0.99746 1.02145 0.98672 1.70825 1.50059 1.00937 1.37462 0.82926 0.76115 0.73339 0.74086 1.19717 1.22575 1.22247 1.21338 0.79051 0.97991 1.00250 0.72879 0.89341 0.89731 0.92037 0.92817 0.86798 0.85694 0.86465 0.92810 0.90858 0.89020 0.90883 0.92648 0.89051 0.92065 0.90829 0.90214 0.96645 0.98495 0.93209 0.92090 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 19.25 74.32 1.43 -0.94 16 2 C -0.24 -4.64 13.73 31.13 0.43 -4.21 16 3 C 0.17 3.04 6.41 70.18 0.45 3.49 16 4 O -0.40 -8.93 10.30 -148.98 -1.53 -10.47 16 5 C 0.08 1.91 5.23 71.98 0.38 2.28 16 6 C -0.13 -2.87 4.42 29.85 0.13 -2.73 16 7 C 0.51 16.36 7.70 87.66 0.67 17.03 16 8 O -0.59 -23.18 15.40 -3.05 -0.05 -23.22 16 9 N -0.60 -20.18 2.97 -818.98 -2.43 -22.62 16 10 C 0.10 2.81 6.34 86.36 0.55 3.35 16 11 C -0.12 -3.15 6.08 30.67 0.19 -2.97 16 12 C -0.12 -4.26 4.54 30.62 0.14 -4.12 16 13 C -0.09 -3.23 2.14 -10.73 -0.02 -3.25 16 14 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.16 6.02 2.95 45.34 0.13 6.16 16 16 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 17 C -0.12 -4.08 6.31 31.78 0.20 -3.88 16 18 C -0.12 -4.38 7.09 31.99 0.23 -4.16 16 19 C 0.15 6.77 5.52 86.86 0.48 7.25 16 20 N -0.60 -28.37 1.87 -668.23 -1.25 -29.62 16 21 C -0.31 -15.77 7.18 84.03 0.60 -15.17 16 22 H 0.06 3.10 7.09 -2.91 -0.02 3.08 16 23 C -0.08 -4.21 5.17 84.86 0.44 -3.77 16 24 N -0.95 -56.70 13.06 21.65 0.28 -56.41 16 25 Si 1.11 50.29 29.99 68.60 2.06 52.34 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 28 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 29 C 0.14 5.46 5.28 86.35 0.46 5.92 16 30 H 0.26 1.50 7.80 -4.40 -0.03 1.47 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 34 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 35 H 0.11 2.31 7.94 -2.39 -0.02 2.29 16 36 H 0.13 2.21 7.69 -2.39 -0.02 2.20 16 37 H 0.12 2.22 5.93 -2.38 -0.01 2.20 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 3.12 4.94 -2.38 -0.01 3.11 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.06 2.12 6.11 -2.39 -0.01 2.11 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 47 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.00 -0.14 6.72 -2.39 -0.02 -0.16 16 49 H 0.26 15.66 5.06 -92.71 -0.47 15.19 16 50 H 0.06 2.61 5.37 -2.39 -0.01 2.60 16 51 H 0.05 2.44 6.11 -2.39 -0.01 2.42 16 Total: -1.00 -70.52 394.91 5.16 -65.36 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 1.20 Total: 24.35 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 6.88 Total: 0.29 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -3.40 Total: -108.65 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -1.58 Total: -33.69 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 2.06 Total: 52.34 kcal Total: -70.52 5.16 -65.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120382750.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.544 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds