Wall clock time and date at job start Tue Mar 31 2020 19:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47075 * 136.39888 * 3 2 1 5 5 C 1.42894 * 114.00005 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47306 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47206 * 179.97438 * 6 5 4 8 8 O 1.21274 * 119.99931 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99656 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63216 * 0.02562 * 9 7 6 11 11 C 1.53191 * 108.77521 * 126.36799 * 10 9 7 12 12 C 1.53042 * 109.31500 * 54.63159 * 11 10 9 13 13 C 1.53038 * 109.53801 * 298.63591 * 12 11 10 14 14 H 1.09005 * 109.49606 * 301.38202 * 13 12 11 15 15 C 1.53003 * 109.49890 * 181.31382 * 13 12 11 16 16 H 1.08991 * 109.87421 * 179.44138 * 15 13 12 17 17 C 1.54321 * 109.88225 * 300.62254 * 15 13 12 18 18 C 1.55154 * 102.94002 * 141.60508 * 17 15 13 19 19 C 1.54906 * 101.58631 * 324.50048 * 18 17 15 20 20 N 1.47031 * 109.87809 * 58.42816 * 15 13 12 21 21 C 1.36935 * 125.64707 * 61.60763 * 20 15 13 22 22 H 1.08001 * 120.00087 * 11.64660 * 21 20 15 23 23 C 1.38811 * 120.00051 * 191.64445 * 21 20 15 24 24 N 1.31620 * 119.99829 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00193 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46843 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47028 * 119.99915 * 25 23 21 28 28 H 1.48500 * 109.47262 * 240.00235 * 25 23 21 29 29 C 1.46929 * 120.62703 * 179.71673 * 9 7 6 30 30 H 4.38443 * 5.44509 * 180.02562 * 4 1 2 31 31 H 1.08993 * 109.47656 * 16.39295 * 3 2 1 32 32 H 1.09004 * 109.46979 * 256.39080 * 3 2 1 33 33 H 1.09002 * 109.47091 * 59.99391 * 5 4 3 34 34 H 1.09003 * 109.47293 * 299.99941 * 5 4 3 35 35 H 1.08999 * 109.46671 * 59.99872 * 6 5 4 36 36 H 1.08995 * 109.46836 * 299.99975 * 6 5 4 37 37 H 1.08994 * 109.58312 * 246.15373 * 10 9 7 38 38 H 1.08998 * 109.58580 * 6.43316 * 10 9 7 39 39 H 1.08999 * 109.49940 * 174.58703 * 11 10 9 40 40 H 1.09007 * 109.49699 * 294.64580 * 11 10 9 41 41 H 1.09002 * 109.45672 * 58.65727 * 12 11 10 42 42 H 1.08998 * 109.46074 * 178.61655 * 12 11 10 43 43 H 1.08994 * 110.71716 * 259.97179 * 17 15 13 44 44 H 1.09000 * 110.72081 * 23.24301 * 17 15 13 45 45 H 1.09005 * 111.00506 * 206.42069 * 18 17 15 46 46 H 1.09007 * 111.00333 * 82.57484 * 18 17 15 47 47 H 1.09005 * 110.36127 * 278.16570 * 19 18 17 48 48 H 1.08998 * 110.46298 * 155.89665 * 19 18 17 49 49 H 0.96995 * 120.00107 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.58242 * 353.42371 * 29 9 7 51 51 H 1.09006 * 109.58240 * 113.84650 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.9765 -0.9292 5 6 4.5464 1.0593 -1.0065 6 6 4.9404 2.1295 -2.0265 7 6 6.4427 2.2172 -2.1077 8 8 7.1304 1.4945 -1.4180 9 7 7.0219 3.0980 -2.9474 10 6 6.2020 3.9796 -3.7896 11 6 6.6396 5.4293 -3.5581 12 6 8.1457 5.5487 -3.8027 13 6 8.8971 4.6537 -2.8146 14 1 8.6504 4.9501 -1.7950 15 6 10.4038 4.7987 -3.0381 16 1 10.9454 4.1710 -2.3306 17 6 10.7611 4.3944 -4.4840 18 6 11.8564 5.4226 -4.8716 19 6 11.3624 6.6947 -4.1386 20 7 10.8018 6.2037 -2.8667 21 6 10.6723 6.9351 -1.7163 22 1 10.4261 6.4418 -0.7876 23 6 10.8576 8.3105 -1.7438 24 7 11.1582 8.9115 -2.8755 25 14 10.6818 9.3082 -0.1743 26 1 10.3439 8.4023 0.9528 27 1 11.9615 10.0032 0.1163 28 1 9.6007 10.3120 -0.3444 29 6 8.4852 3.1995 -3.0332 30 1 -1.0501 0.0000 0.0003 31 1 3.0099 -0.9850 -0.2900 32 1 3.0092 0.2426 0.9989 33 1 4.9500 0.0956 -1.3172 34 1 4.9487 1.3234 -0.0285 35 1 4.5368 3.0932 -1.7161 36 1 4.5382 1.8650 -3.0044 37 1 6.3435 3.7183 -4.8383 38 1 5.1512 3.8659 -3.5232 39 1 6.1062 6.0848 -4.2466 40 1 6.4132 5.7183 -2.5317 41 1 8.3739 5.2363 -4.8217 42 1 8.4554 6.5843 -3.6626 43 1 11.1570 3.3794 -4.5139 44 1 9.8936 4.4905 -5.1369 45 1 11.8821 5.5783 -5.9502 46 1 12.8330 5.1120 -4.5000 47 1 10.5917 7.1951 -4.7249 48 1 12.1945 7.3730 -3.9496 49 1 11.2873 9.8727 -2.8948 50 1 8.9404 2.5730 -2.2661 51 1 8.8169 2.8730 -4.0189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120382753.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:32 Heat of formation + Delta-G solvation = -5.064387 kcal Electronic energy + Delta-G solvation = -29456.701724 eV Core-core repulsion = 25551.287387 eV Total energy + Delta-G solvation = -3905.414337 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.31256 -38.67427 -38.09119 -36.41852 -33.82449 -33.02704 -32.33000 -31.74695 -30.98088 -29.32293 -27.45355 -26.65178 -25.40580 -24.53953 -23.45953 -22.44425 -21.22466 -20.16009 -19.15722 -18.60037 -18.31555 -17.60612 -16.72998 -16.62804 -16.25313 -15.72888 -15.33941 -15.15176 -15.04149 -14.53089 -14.17803 -14.00713 -13.78981 -13.75282 -13.17417 -12.94181 -12.88024 -12.71237 -12.13946 -12.09439 -11.91512 -11.88297 -11.64099 -11.55131 -11.11841 -10.91157 -10.87449 -10.85539 -10.78278 -10.68903 -10.39067 -10.24218 -10.07266 -9.93166 -9.88447 -9.85533 -9.63810 -9.58274 -9.42956 -8.57947 -8.46577 -6.77433 -5.72211 -3.06763 2.10674 2.43944 2.61620 2.97242 3.38611 3.45808 3.47186 3.60711 4.16422 4.49184 4.50861 4.77658 4.81105 4.89427 4.96563 5.03204 5.15492 5.21670 5.23805 5.27862 5.44428 5.47647 5.49970 5.55430 5.57434 5.60540 5.73740 5.75739 5.79406 5.83882 5.92840 5.99212 6.09167 6.20333 6.28912 6.37575 6.46792 6.56073 6.62903 6.69667 6.77037 6.79111 6.99661 7.03767 7.16280 7.19422 7.46019 7.58798 7.63801 7.83805 8.16876 8.30946 9.22628 9.83677 10.51769 11.38708 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.002515 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.745989 B =11128.896643 C =12126.648888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.191 4.191 3 C 0.173 3.827 4 O -0.387 6.387 5 C 0.078 3.922 6 C -0.139 4.139 7 C 0.518 3.482 8 O -0.548 6.548 9 N -0.604 5.604 10 C 0.106 3.894 11 C -0.135 4.135 12 C -0.106 4.106 13 C -0.105 4.105 14 H 0.070 0.930 15 C 0.168 3.832 16 H 0.033 0.967 17 C -0.130 4.130 18 C -0.150 4.150 19 C 0.172 3.828 20 N -0.591 5.591 21 C -0.220 4.220 22 H 0.074 0.926 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.115 3.885 30 H 0.222 0.778 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.021 0.979 48 H 0.075 0.925 49 H 0.251 0.749 50 H 0.086 0.914 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.001 -14.804 -2.319 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.192 4.192 3 C 0.098 3.902 4 O -0.306 6.306 5 C 0.002 3.998 6 C -0.179 4.179 7 C 0.306 3.694 8 O -0.427 6.427 9 N -0.337 5.337 10 C -0.017 4.017 11 C -0.173 4.173 12 C -0.143 4.143 13 C -0.127 4.127 14 H 0.088 0.912 15 C 0.060 3.940 16 H 0.051 0.949 17 C -0.168 4.168 18 C -0.188 4.188 19 C 0.047 3.953 20 N -0.314 5.314 21 C -0.348 4.348 22 H 0.091 0.909 23 C -0.203 4.203 24 N -0.566 5.566 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.007 4.007 30 H 0.238 0.762 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.039 0.961 48 H 0.093 0.907 49 H 0.061 0.939 50 H 0.105 0.895 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.700 -14.832 -1.995 20.977 hybrid contribution -0.266 0.619 0.906 1.129 sum -14.966 -14.213 -1.088 20.668 Atomic orbital electron populations 1.24983 0.95895 0.99190 0.99371 1.22587 0.93928 1.01363 1.01280 1.19051 0.84584 0.92823 0.93759 1.87863 1.21880 1.58759 1.62145 1.22180 0.79543 0.98813 0.99300 1.21488 0.93135 1.01510 1.01725 1.20276 0.89816 0.79975 0.79353 1.90693 1.65255 1.43262 1.43479 1.48152 1.07846 1.36986 1.40667 1.21829 0.94593 0.90649 0.94640 1.21946 0.98463 0.94586 1.02332 1.21488 0.92049 1.02629 0.98125 1.21878 0.98287 0.92180 1.00320 0.91187 1.20867 0.90878 0.88329 0.93968 0.94923 1.22689 0.98906 0.98038 0.97141 1.23014 0.97786 0.98853 0.99196 1.21466 0.97412 0.91293 0.85105 1.44491 1.70538 1.06894 1.09522 1.19001 1.41078 0.88597 0.86154 0.90853 1.24811 1.02210 0.96374 0.96888 1.69939 1.54089 1.08744 1.23844 0.86127 0.77298 0.80259 0.82628 1.20543 1.21849 1.21827 1.21724 0.78185 0.98641 1.02130 0.76150 0.90640 0.90580 0.92018 0.91912 0.87947 0.88114 0.91350 0.90165 0.91165 0.91691 0.92681 0.89347 0.92615 0.91493 0.92627 0.92511 0.96070 0.90692 0.93873 0.89519 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 19.25 29.55 0.57 -0.84 16 2 C -0.19 -1.83 13.73 -37.12 -0.51 -2.34 16 3 C 0.17 1.50 6.41 34.37 0.22 1.73 16 4 O -0.39 -4.15 10.30 -35.23 -0.36 -4.52 16 5 C 0.08 0.81 5.23 37.16 0.19 1.00 16 6 C -0.14 -1.42 4.42 -27.88 -0.12 -1.54 16 7 C 0.52 7.09 7.70 -10.98 -0.08 7.00 16 8 O -0.55 -9.34 15.40 5.56 0.09 -9.25 16 9 N -0.60 -8.09 2.98 -173.05 -0.52 -8.60 16 10 C 0.11 1.15 6.35 -3.71 -0.02 1.13 16 11 C -0.14 -1.78 6.08 -26.61 -0.16 -1.94 16 12 C -0.11 -1.75 4.74 -26.69 -0.13 -1.87 16 13 C -0.11 -1.84 2.09 -90.74 -0.19 -2.03 16 14 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 15 C 0.17 3.28 2.95 -66.95 -0.20 3.08 16 16 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 17 C -0.13 -2.16 5.11 -24.90 -0.13 -2.29 16 18 C -0.15 -2.74 7.08 -24.59 -0.17 -2.92 16 19 C 0.17 3.99 5.47 -2.54 -0.01 3.97 16 20 N -0.59 -14.12 2.30 -162.58 -0.37 -14.49 16 21 C -0.22 -5.87 9.85 -15.06 -0.15 -6.01 16 22 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 23 C -0.01 -0.18 5.47 -17.43 -0.10 -0.28 16 24 N -0.92 -26.11 10.46 55.49 0.58 -25.53 16 25 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 C 0.12 1.74 5.55 -3.95 -0.02 1.72 16 30 H 0.22 0.90 7.80 -54.09 -0.42 0.47 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.10 0.97 7.70 -51.93 -0.40 0.57 16 36 H 0.10 0.86 7.94 -51.93 -0.41 0.45 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.86 6.10 -51.93 -0.32 0.54 16 42 H 0.09 1.86 7.54 -51.93 -0.39 1.47 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 1.04 5.52 -51.93 -0.29 0.76 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.02 0.53 8.12 -51.93 -0.42 0.11 16 48 H 0.07 1.98 6.70 -51.93 -0.35 1.63 16 49 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 50 H 0.09 1.44 7.01 -51.93 -0.36 1.07 16 51 H 0.07 0.91 6.93 -51.93 -0.36 0.55 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -31.59 400.71 -9.22 -40.81 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.64 Total: 1.12 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.01 Total: -2.42 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.31 Total: -48.63 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.28 Total: -13.77 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.59 -9.22 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120382753.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.746 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds