Wall clock time and date at job start Tue Mar 31 2020 19:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47075 * 136.39888 * 3 2 1 5 5 C 1.42894 * 114.00005 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47306 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47206 * 179.97438 * 6 5 4 8 8 O 1.21274 * 119.99931 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99656 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63216 * 0.02562 * 9 7 6 11 11 C 1.53191 * 108.77521 * 126.36799 * 10 9 7 12 12 C 1.53042 * 109.31500 * 54.63159 * 11 10 9 13 13 C 1.53038 * 109.53801 * 298.63591 * 12 11 10 14 14 H 1.09005 * 109.49606 * 301.38202 * 13 12 11 15 15 C 1.53003 * 109.49890 * 181.31382 * 13 12 11 16 16 H 1.08991 * 109.87421 * 179.44138 * 15 13 12 17 17 C 1.54321 * 109.88225 * 300.62254 * 15 13 12 18 18 C 1.55154 * 102.94002 * 141.60508 * 17 15 13 19 19 C 1.54906 * 101.58631 * 324.50048 * 18 17 15 20 20 N 1.47031 * 109.87809 * 58.42816 * 15 13 12 21 21 C 1.36935 * 125.64707 * 61.60763 * 20 15 13 22 22 H 1.08001 * 120.00087 * 11.64660 * 21 20 15 23 23 C 1.38811 * 120.00051 * 191.64445 * 21 20 15 24 24 N 1.31620 * 119.99829 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00193 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46843 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47028 * 119.99915 * 25 23 21 28 28 H 1.48500 * 109.47262 * 240.00235 * 25 23 21 29 29 C 1.46929 * 120.62703 * 179.71673 * 9 7 6 30 30 H 4.38443 * 5.44509 * 180.02562 * 4 1 2 31 31 H 1.08993 * 109.47656 * 16.39295 * 3 2 1 32 32 H 1.09004 * 109.46979 * 256.39080 * 3 2 1 33 33 H 1.09002 * 109.47091 * 59.99391 * 5 4 3 34 34 H 1.09003 * 109.47293 * 299.99941 * 5 4 3 35 35 H 1.08999 * 109.46671 * 59.99872 * 6 5 4 36 36 H 1.08995 * 109.46836 * 299.99975 * 6 5 4 37 37 H 1.08994 * 109.58312 * 246.15373 * 10 9 7 38 38 H 1.08998 * 109.58580 * 6.43316 * 10 9 7 39 39 H 1.08999 * 109.49940 * 174.58703 * 11 10 9 40 40 H 1.09007 * 109.49699 * 294.64580 * 11 10 9 41 41 H 1.09002 * 109.45672 * 58.65727 * 12 11 10 42 42 H 1.08998 * 109.46074 * 178.61655 * 12 11 10 43 43 H 1.08994 * 110.71716 * 259.97179 * 17 15 13 44 44 H 1.09000 * 110.72081 * 23.24301 * 17 15 13 45 45 H 1.09005 * 111.00506 * 206.42069 * 18 17 15 46 46 H 1.09007 * 111.00333 * 82.57484 * 18 17 15 47 47 H 1.09005 * 110.36127 * 278.16570 * 19 18 17 48 48 H 1.08998 * 110.46298 * 155.89665 * 19 18 17 49 49 H 0.96995 * 120.00107 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.58242 * 353.42371 * 29 9 7 51 51 H 1.09006 * 109.58240 * 113.84650 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.9765 -0.9292 5 6 4.5464 1.0593 -1.0065 6 6 4.9404 2.1295 -2.0265 7 6 6.4427 2.2172 -2.1077 8 8 7.1304 1.4945 -1.4180 9 7 7.0219 3.0980 -2.9474 10 6 6.2020 3.9796 -3.7896 11 6 6.6396 5.4293 -3.5581 12 6 8.1457 5.5487 -3.8027 13 6 8.8971 4.6537 -2.8146 14 1 8.6504 4.9501 -1.7950 15 6 10.4038 4.7987 -3.0381 16 1 10.9454 4.1710 -2.3306 17 6 10.7611 4.3944 -4.4840 18 6 11.8564 5.4226 -4.8716 19 6 11.3624 6.6947 -4.1386 20 7 10.8018 6.2037 -2.8667 21 6 10.6723 6.9351 -1.7163 22 1 10.4261 6.4418 -0.7876 23 6 10.8576 8.3105 -1.7438 24 7 11.1582 8.9115 -2.8755 25 14 10.6818 9.3082 -0.1743 26 1 10.3439 8.4023 0.9528 27 1 11.9615 10.0032 0.1163 28 1 9.6007 10.3120 -0.3444 29 6 8.4852 3.1995 -3.0332 30 1 -1.0501 0.0000 0.0003 31 1 3.0099 -0.9850 -0.2900 32 1 3.0092 0.2426 0.9989 33 1 4.9500 0.0956 -1.3172 34 1 4.9487 1.3234 -0.0285 35 1 4.5368 3.0932 -1.7161 36 1 4.5382 1.8650 -3.0044 37 1 6.3435 3.7183 -4.8383 38 1 5.1512 3.8659 -3.5232 39 1 6.1062 6.0848 -4.2466 40 1 6.4132 5.7183 -2.5317 41 1 8.3739 5.2363 -4.8217 42 1 8.4554 6.5843 -3.6626 43 1 11.1570 3.3794 -4.5139 44 1 9.8936 4.4905 -5.1369 45 1 11.8821 5.5783 -5.9502 46 1 12.8330 5.1120 -4.5000 47 1 10.5917 7.1951 -4.7249 48 1 12.1945 7.3730 -3.9496 49 1 11.2873 9.8727 -2.8948 50 1 8.9404 2.5730 -2.2661 51 1 8.8169 2.8730 -4.0189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120382753.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:31 Heat of formation + Delta-G solvation = -22.912483 kcal Electronic energy + Delta-G solvation = -29457.475676 eV Core-core repulsion = 25551.287387 eV Total energy + Delta-G solvation = -3906.188288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.45172 -39.94666 -39.02874 -37.74710 -34.77017 -34.44996 -33.79615 -32.75472 -32.10352 -31.18440 -28.40961 -27.87089 -26.56210 -26.37673 -24.51552 -23.63802 -22.53024 -21.86127 -20.34093 -19.68638 -19.26398 -18.69102 -18.37911 -17.46608 -17.22964 -16.99426 -16.58295 -16.39645 -16.15272 -15.85228 -15.64719 -15.52854 -15.03763 -14.76433 -14.38225 -14.18333 -13.88559 -13.76069 -13.66490 -13.61537 -13.26510 -13.15178 -12.87407 -12.78135 -12.71252 -12.48083 -12.40445 -11.99874 -11.94079 -11.81011 -11.72499 -11.55659 -11.52116 -11.45983 -11.43722 -11.24380 -10.91648 -10.83197 -10.63902 -10.58154 -9.60781 -8.75782 -7.82838 -5.17069 1.41558 1.42747 1.43294 1.52276 1.57430 1.81975 2.00963 2.48908 2.89237 3.34240 3.50953 3.64121 3.67908 3.81817 3.96664 4.01844 4.06977 4.12516 4.18256 4.29028 4.30066 4.33063 4.37896 4.43455 4.44028 4.48354 4.60833 4.62019 4.76561 4.78172 4.80369 4.85255 4.88399 4.89458 4.96366 5.02837 5.10138 5.21932 5.24039 5.33355 5.47033 5.50804 5.55601 5.61405 5.69660 5.74637 5.85184 6.04989 6.29146 6.42458 6.59402 7.11655 7.15487 7.84182 8.50178 9.26750 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.002515 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.745989 B =11128.896643 C =12126.648888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.398 6.398 5 C 0.081 3.919 6 C -0.130 4.130 7 C 0.514 3.486 8 O -0.588 6.588 9 N -0.606 5.606 10 C 0.109 3.891 11 C -0.131 4.131 12 C -0.097 4.097 13 C -0.093 4.093 14 H 0.029 0.971 15 C 0.158 3.842 16 H 0.019 0.981 17 C -0.115 4.115 18 C -0.138 4.138 19 C 0.177 3.823 20 N -0.607 5.607 21 C -0.222 4.222 22 H 0.065 0.935 23 C -0.060 4.060 24 N -0.944 5.944 25 Si 0.964 3.036 26 H -0.274 1.274 27 H -0.293 1.293 28 H -0.292 1.292 29 C 0.126 3.874 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.057 0.943 47 H -0.002 1.002 48 H 0.034 0.966 49 H 0.245 0.755 50 H 0.067 0.933 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.327 -16.758 -3.780 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.319 6.319 5 C 0.005 3.995 6 C -0.169 4.169 7 C 0.304 3.696 8 O -0.469 6.469 9 N -0.338 5.338 10 C -0.013 4.013 11 C -0.169 4.169 12 C -0.135 4.135 13 C -0.114 4.114 14 H 0.048 0.952 15 C 0.050 3.950 16 H 0.037 0.963 17 C -0.153 4.153 18 C -0.176 4.176 19 C 0.053 3.947 20 N -0.331 5.331 21 C -0.352 4.352 22 H 0.083 0.917 23 C -0.253 4.253 24 N -0.593 5.593 25 Si 0.793 3.207 26 H -0.199 1.199 27 H -0.220 1.220 28 H -0.219 1.219 29 C 0.003 3.997 30 H 0.270 0.730 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.132 0.868 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.076 0.924 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.055 0.945 50 H 0.086 0.914 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.050 -16.811 -3.463 24.193 hybrid contribution 0.432 1.204 1.408 1.902 sum -16.618 -15.607 -2.055 22.890 Atomic orbital electron populations 1.25870 0.96808 0.97450 0.97627 1.23071 0.94832 1.03054 1.02973 1.19226 0.84648 0.93092 0.93870 1.87821 1.21728 1.59548 1.62779 1.22098 0.79584 0.98954 0.98903 1.21460 0.90239 1.02097 1.03142 1.20880 0.91174 0.79210 0.78325 1.90678 1.66448 1.44907 1.44904 1.48239 1.07237 1.37334 1.40991 1.22029 0.95714 0.87949 0.95606 1.21903 0.95967 0.97200 1.01823 1.21346 0.94494 0.99082 0.98566 1.21632 0.96942 0.94459 0.98387 0.95195 1.21090 0.92119 0.85659 0.96089 0.96292 1.22664 0.98985 0.98996 0.94638 1.22893 0.98168 0.96350 1.00197 1.21242 0.95271 0.93036 0.85200 1.44673 1.70997 1.08422 1.08981 1.19165 1.39813 0.89109 0.87083 0.91732 1.25474 1.02991 0.97355 0.99486 1.70131 1.55475 1.08351 1.25337 0.85223 0.76839 0.78771 0.79843 1.19888 1.22005 1.21886 1.21458 0.79720 0.95824 1.02680 0.72989 0.89293 0.89820 0.91980 0.92993 0.86783 0.85457 0.88755 0.86987 0.89069 0.93571 0.90935 0.94569 0.89451 0.89709 0.89796 0.92384 0.98388 0.94755 0.94542 0.91406 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 19.25 74.32 1.43 -0.78 16 2 C -0.24 -4.28 13.73 31.12 0.43 -3.85 16 3 C 0.17 2.74 6.41 70.18 0.45 3.19 16 4 O -0.40 -7.96 10.30 -148.98 -1.53 -9.49 16 5 C 0.08 1.57 5.23 71.98 0.38 1.94 16 6 C -0.13 -2.30 4.42 29.85 0.13 -2.17 16 7 C 0.51 13.17 7.70 87.66 0.67 13.84 16 8 O -0.59 -19.77 15.40 -3.01 -0.05 -19.82 16 9 N -0.61 -14.83 2.98 -819.81 -2.44 -17.27 16 10 C 0.11 1.95 6.35 86.36 0.55 2.50 16 11 C -0.13 -3.21 6.08 30.67 0.19 -3.02 16 12 C -0.10 -3.18 4.74 30.62 0.15 -3.03 16 13 C -0.09 -3.27 2.09 -10.87 -0.02 -3.29 16 14 H 0.03 1.27 8.03 -2.38 -0.02 1.25 16 15 C 0.16 6.19 2.95 45.34 0.13 6.33 16 16 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 17 C -0.12 -3.55 5.11 31.78 0.16 -3.39 16 18 C -0.14 -4.84 7.08 31.98 0.23 -4.62 16 19 C 0.18 8.49 5.47 86.86 0.48 8.96 16 20 N -0.61 -30.11 2.30 -668.28 -1.54 -31.64 16 21 C -0.22 -12.41 9.85 84.03 0.83 -11.58 16 22 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 23 C -0.06 -3.40 5.47 84.86 0.46 -2.94 16 24 N -0.94 -56.12 10.46 21.65 0.23 -55.90 16 25 Si 0.96 46.61 29.55 68.60 2.03 48.64 16 26 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 29 C 0.13 3.61 5.55 86.20 0.48 4.09 16 30 H 0.25 1.25 7.80 -4.41 -0.03 1.22 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 34 H 0.05 1.09 8.10 -2.39 -0.02 1.08 16 35 H 0.11 1.80 7.70 -2.39 -0.02 1.78 16 36 H 0.13 1.62 7.94 -2.39 -0.02 1.60 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 1.37 5.93 -2.39 -0.01 1.36 16 39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.07 2.09 6.10 -2.39 -0.01 2.08 16 42 H 0.04 1.56 7.54 -2.39 -0.02 1.55 16 43 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.08 2.33 5.52 -2.39 -0.01 2.32 16 45 H 0.08 2.50 8.14 -2.38 -0.02 2.49 16 46 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 47 H 0.00 -0.10 8.12 -2.38 -0.02 -0.12 16 48 H 0.03 1.90 6.70 -2.39 -0.02 1.88 16 49 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 50 H 0.07 2.23 7.01 -2.39 -0.02 2.21 16 51 H 0.09 2.16 6.93 -2.38 -0.02 2.14 16 Total: -1.00 -74.06 400.71 4.71 -69.35 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.89 Total: 13.94 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 7.12 Total: 2.19 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -3.75 Total: -104.81 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.58 Total: -29.31 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -74.06 4.71 -69.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120382753.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.439 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds