Wall clock time and date at job start Tue Mar 31 2020 20:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46568 * 2 1 4 4 O 1.21276 * 120.00431 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99825 * 180.02562 * 3 2 1 6 6 C 1.46498 * 120.00201 * 180.02562 * 5 3 2 7 7 H 1.09003 * 109.46788 * 324.99482 * 6 5 3 8 8 C 1.52992 * 109.47237 * 84.99604 * 6 5 3 9 9 C 1.52996 * 109.47011 * 204.99944 * 6 5 3 10 10 C 1.52994 * 109.47614 * 64.99673 * 9 6 5 11 11 H 1.09007 * 109.47290 * 305.00447 * 10 9 6 12 12 C 1.53003 * 109.47557 * 184.99876 * 10 9 6 13 13 N 1.46905 * 109.47284 * 64.99621 * 10 9 6 14 14 C 1.46897 * 111.00489 * 205.00282 * 13 10 9 15 15 C 1.50694 * 109.47115 * 180.02562 * 14 13 10 16 16 C 1.38302 * 119.92724 * 269.72750 * 15 14 13 17 17 C 1.38109 * 120.06352 * 179.72568 * 16 15 14 18 18 C 1.38868 * 119.93151 * 0.57072 * 17 16 15 19 19 O 1.35755 * 120.07231 * 179.68403 * 18 17 16 20 20 C 1.34825 * 117.00541 * 174.48755 * 19 18 17 21 21 H 1.08006 * 120.00050 * 5.05432 * 20 19 18 22 22 C 1.38655 * 120.00148 * 185.05645 * 20 19 18 23 23 N 1.31555 * 119.99851 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99962 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47318 * 89.99904 * 24 22 20 26 26 H 1.48504 * 109.47124 * 210.00107 * 24 22 20 27 27 H 1.48501 * 109.47092 * 329.99761 * 24 22 20 28 28 C 1.38876 * 119.86636 * 359.70061 * 18 17 16 29 29 C 1.38104 * 119.92687 * 0.02562 * 28 18 17 30 30 H 1.08996 * 109.47095 * 60.00240 * 1 2 3 31 31 H 1.09004 * 109.46505 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46906 * 299.99511 * 1 2 3 33 33 H 1.08995 * 109.46906 * 240.00489 * 2 1 3 34 34 H 1.08996 * 109.47095 * 119.99760 * 2 1 3 35 35 H 0.97000 * 119.99471 * 359.97438 * 5 3 2 36 36 H 1.09003 * 109.47331 * 60.00211 * 8 6 5 37 37 H 1.09003 * 109.47314 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.47373 * 299.99840 * 8 6 5 39 39 H 1.09004 * 109.47254 * 184.99683 * 9 6 5 40 40 H 1.09002 * 109.47136 * 304.99290 * 9 6 5 41 41 H 1.09003 * 109.46972 * 179.97438 * 12 10 9 42 42 H 1.08995 * 109.47070 * 299.99898 * 12 10 9 43 43 H 1.09001 * 109.46498 * 60.00023 * 12 10 9 44 44 H 1.00905 * 110.99652 * 81.04533 * 13 10 9 45 45 H 1.09000 * 109.46789 * 300.00427 * 14 13 10 46 46 H 1.09001 * 109.46778 * 59.99691 * 14 13 10 47 47 H 1.07995 * 119.97137 * 359.97438 * 16 15 14 48 48 H 1.08005 * 120.03090 * 180.27243 * 17 16 15 49 49 H 0.97001 * 119.99968 * 179.97438 * 23 22 20 50 50 H 1.08003 * 120.03825 * 179.97438 * 28 18 17 51 51 H 1.08002 * 119.96354 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 3.8456 3.0484 0.0000 7 1 3.1728 3.6719 -0.5888 8 6 3.8977 3.5704 1.4372 9 6 5.2479 3.0939 -0.6102 10 6 5.1759 2.6906 -2.0843 11 1 4.6954 1.7160 -2.1714 12 6 6.5907 2.6151 -2.6621 13 7 4.3960 3.6891 -2.8277 14 6 3.8032 3.1010 -4.0362 15 6 3.0131 4.1529 -4.7712 16 6 1.6717 4.3327 -4.4867 17 6 0.9463 5.2997 -5.1545 18 6 1.5623 6.0840 -6.1209 19 8 0.8505 7.0311 -6.7837 20 6 1.5334 7.8330 -7.6253 21 1 2.5824 7.6539 -7.8098 22 6 0.8891 8.8876 -8.2539 23 7 -0.3888 9.1054 -8.0295 24 14 1.8355 9.9990 -9.4194 25 1 1.7552 9.4535 -10.7982 26 1 1.2465 11.3620 -9.3912 27 1 3.2571 10.0653 -8.9952 28 6 2.9082 5.8973 -6.4083 29 6 3.6295 4.9324 -5.7330 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9877 0.9299 -0.0005 36 1 4.5706 2.9469 2.0261 37 1 4.2615 4.5979 1.4377 38 1 2.8987 3.5380 1.8720 39 1 5.6468 4.1050 -0.5293 40 1 5.8993 2.4024 -0.0757 41 1 6.5393 2.3273 -3.7122 42 1 7.0711 3.5896 -2.5751 43 1 7.1693 1.8741 -2.1105 44 1 4.9619 4.4925 -3.0568 45 1 4.5954 2.7240 -4.6830 46 1 3.1429 2.2807 -3.7547 47 1 1.1918 3.7189 -3.7388 48 1 -0.1002 5.4426 -4.9288 49 1 -0.8395 9.8434 -8.4690 50 1 3.3900 6.5054 -7.1597 51 1 4.6760 4.7864 -5.9564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133420342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:18 Heat of formation + Delta-G solvation = -60.555444 kcal Electronic energy + Delta-G solvation = -28693.694037 eV Core-core repulsion = 24785.873427 eV Total energy + Delta-G solvation = -3907.820610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.98502 -39.05405 -37.92783 -36.57266 -35.17790 -33.05730 -32.43637 -31.77838 -30.64515 -30.09654 -28.41031 -27.00790 -25.49614 -24.79561 -23.92251 -21.91797 -21.57641 -20.76469 -20.39445 -20.28738 -17.92646 -17.34711 -16.95025 -16.34716 -15.72748 -15.55298 -15.11155 -14.87087 -14.50257 -14.28763 -14.15964 -13.86137 -13.71568 -13.53297 -13.52260 -13.18655 -12.97387 -12.68040 -12.65902 -12.62279 -12.35222 -12.20417 -12.08489 -11.93632 -11.91502 -11.53721 -11.40550 -11.30606 -11.21049 -11.05061 -10.87108 -10.72536 -10.58733 -10.47131 -10.37913 -9.82913 -9.28803 -9.11658 -8.80495 -8.30185 -8.10365 -7.13032 -6.41561 -4.00397 2.28716 2.34358 2.62662 3.10986 3.14137 3.15136 3.19997 3.99149 4.21521 4.43494 4.60631 4.71361 4.79050 4.86616 4.88620 4.97581 5.13340 5.15142 5.20459 5.31457 5.33180 5.34944 5.36507 5.42913 5.46370 5.55628 5.59331 5.60655 5.67942 5.74599 5.75090 5.85142 5.90017 5.93051 5.98712 6.05957 6.06568 6.23341 6.27587 6.48188 6.49688 6.77629 6.95893 7.07520 7.14188 7.31902 7.41390 7.42786 7.48512 7.53659 7.89253 8.03599 8.21597 9.04002 9.75442 10.76642 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.002391 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.463195 B =11709.743675 C =12731.328693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.145 4.145 3 C 0.509 3.491 4 O -0.532 6.532 5 N -0.726 5.726 6 C 0.144 3.856 7 H 0.108 0.892 8 C -0.163 4.163 9 C -0.113 4.113 10 C 0.081 3.919 11 H 0.075 0.925 12 C -0.183 4.183 13 N -0.676 5.676 14 C 0.122 3.878 15 C -0.184 4.184 16 C -0.049 4.049 17 C -0.193 4.193 18 C 0.157 3.843 19 O -0.179 6.179 20 C -0.391 4.391 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.863 5.863 24 Si 0.940 3.060 25 H -0.274 1.274 26 H -0.277 1.277 27 H -0.268 1.268 28 C -0.236 4.236 29 C -0.066 4.066 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.393 0.607 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.342 0.658 45 H 0.025 0.975 46 H 0.066 0.934 47 H 0.111 0.889 48 H 0.116 0.884 49 H 0.270 0.730 50 H 0.125 0.875 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.887 -18.263 15.972 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.295 3.705 4 O -0.408 6.408 5 N -0.378 5.378 6 C 0.040 3.960 7 H 0.126 0.874 8 C -0.221 4.221 9 C -0.152 4.152 10 C -0.029 4.029 11 H 0.093 0.907 12 C -0.242 4.242 13 N -0.307 5.307 14 C -0.006 4.006 15 C -0.186 4.186 16 C -0.068 4.068 17 C -0.213 4.213 18 C 0.103 3.897 19 O -0.082 6.082 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.498 5.498 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.255 4.255 29 C -0.085 4.085 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.227 0.773 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.160 0.840 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.129 0.871 48 H 0.134 0.866 49 H 0.080 0.920 50 H 0.143 0.857 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.310 -17.429 16.269 26.389 hybrid contribution 1.783 0.127 -1.203 2.155 sum 13.093 -17.302 15.066 26.415 Atomic orbital electron populations 1.21526 0.93024 1.01417 1.03579 1.21636 0.98797 0.94176 1.03884 1.20722 0.82314 0.91667 0.75806 1.90740 1.55156 1.46420 1.48447 1.46123 1.06938 1.08790 1.75973 1.20963 0.96058 0.82927 0.96048 0.87407 1.22183 1.02063 1.01117 0.96756 1.21879 0.95848 1.02650 0.94804 1.21575 0.91719 0.96221 0.93411 0.90676 1.22526 0.98179 1.02197 1.01344 1.60650 1.37502 1.08550 1.24002 1.20586 0.95870 0.95152 0.88967 1.19101 0.94621 1.02690 1.02152 1.20483 0.93222 0.96092 0.97002 1.20239 1.00474 1.00340 1.00230 1.19395 0.90329 0.89506 0.90499 1.83982 1.35003 1.38995 1.50222 1.21313 0.95093 1.08697 1.21662 0.89149 1.25283 0.96061 0.96972 0.98230 1.70042 1.08964 1.29581 1.41209 0.85723 0.79097 0.78979 0.79678 1.19922 1.20252 1.19249 1.21101 0.95006 1.03547 1.05831 1.20560 0.97855 0.94784 0.95299 0.91712 0.92298 0.92066 0.89188 0.89372 0.77350 0.93136 0.91713 0.92317 0.90324 0.91738 0.92630 0.92346 0.92397 0.83961 0.95660 0.91552 0.87097 0.86608 0.92047 0.85730 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.20 37.16 0.34 -0.83 16 2 C -0.14 -1.05 6.42 -27.88 -0.18 -1.22 16 3 C 0.51 5.46 7.79 -10.98 -0.09 5.38 16 4 O -0.53 -8.34 15.64 5.56 0.09 -8.25 16 5 N -0.73 -6.01 4.45 -53.81 -0.24 -6.25 16 6 C 0.14 1.39 2.52 -67.94 -0.17 1.21 16 7 H 0.11 1.48 7.05 -51.93 -0.37 1.11 16 8 C -0.16 -1.48 9.48 37.15 0.35 -1.12 16 9 C -0.11 -0.86 4.43 -26.74 -0.12 -0.98 16 10 C 0.08 0.70 2.53 -67.71 -0.17 0.52 16 11 H 0.08 0.65 7.28 -51.93 -0.38 0.27 16 12 C -0.18 -1.38 9.16 37.16 0.34 -1.04 16 13 N -0.68 -7.91 5.61 -107.99 -0.61 -8.52 16 14 C 0.12 1.63 5.61 -4.98 -0.03 1.60 16 15 C -0.18 -3.19 5.40 -104.58 -0.56 -3.75 16 16 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 17 C -0.19 -4.31 9.99 -39.40 -0.39 -4.71 16 18 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 19 O -0.18 -5.23 9.76 0.05 0.00 -5.23 16 20 C -0.39 -11.14 9.49 30.89 0.29 -10.84 16 21 H 0.09 2.38 5.20 -52.48 -0.27 2.10 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -25.77 13.67 55.48 0.76 -25.01 16 24 Si 0.94 20.81 29.55 -169.99 -5.02 15.78 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 28 C -0.24 -5.20 9.17 -39.39 -0.36 -5.56 16 29 C -0.07 -1.21 9.69 -39.61 -0.38 -1.60 16 30 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.39 2.07 8.60 -40.82 -0.35 1.72 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.05 0.46 7.45 -51.93 -0.39 0.08 16 42 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.34 4.09 8.46 -39.29 -0.33 3.75 16 45 H 0.03 0.31 7.38 -51.93 -0.38 -0.07 16 46 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 47 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 48 H 0.12 2.54 8.06 -52.48 -0.42 2.11 16 49 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 51 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 417.88 15.07 6.30 6.30 Total: -1.00 -33.33 417.88 -9.25 -42.58 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -8.65 Total: 8.23 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -1.87 Total: -19.64 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: -0.09 Total: -39.77 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.33 -9.25 -42.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133420342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.977 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds