Wall clock time and date at job start Tue Mar 31 2020 20:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.46568 * 2 1 4 4 O 1.21276 * 120.00431 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99825 * 180.02562 * 3 2 1 6 6 C 1.46498 * 120.00201 * 180.02562 * 5 3 2 7 7 H 1.09003 * 109.46788 * 324.99482 * 6 5 3 8 8 C 1.52992 * 109.47237 * 84.99604 * 6 5 3 9 9 C 1.52996 * 109.47011 * 204.99944 * 6 5 3 10 10 C 1.52994 * 109.47614 * 64.99673 * 9 6 5 11 11 H 1.09007 * 109.47290 * 305.00447 * 10 9 6 12 12 C 1.53003 * 109.47557 * 184.99876 * 10 9 6 13 13 N 1.46905 * 109.47284 * 64.99621 * 10 9 6 14 14 C 1.46897 * 111.00489 * 205.00282 * 13 10 9 15 15 C 1.50694 * 109.47115 * 180.02562 * 14 13 10 16 16 C 1.38302 * 119.92724 * 269.72750 * 15 14 13 17 17 C 1.38109 * 120.06352 * 179.72568 * 16 15 14 18 18 C 1.38868 * 119.93151 * 0.57072 * 17 16 15 19 19 O 1.35755 * 120.07231 * 179.68403 * 18 17 16 20 20 C 1.34825 * 117.00541 * 174.48755 * 19 18 17 21 21 H 1.08006 * 120.00050 * 5.05432 * 20 19 18 22 22 C 1.38655 * 120.00148 * 185.05645 * 20 19 18 23 23 N 1.31555 * 119.99851 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99962 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47318 * 89.99904 * 24 22 20 26 26 H 1.48504 * 109.47124 * 210.00107 * 24 22 20 27 27 H 1.48501 * 109.47092 * 329.99761 * 24 22 20 28 28 C 1.38876 * 119.86636 * 359.70061 * 18 17 16 29 29 C 1.38104 * 119.92687 * 0.02562 * 28 18 17 30 30 H 1.08996 * 109.47095 * 60.00240 * 1 2 3 31 31 H 1.09004 * 109.46505 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46906 * 299.99511 * 1 2 3 33 33 H 1.08995 * 109.46906 * 240.00489 * 2 1 3 34 34 H 1.08996 * 109.47095 * 119.99760 * 2 1 3 35 35 H 0.97000 * 119.99471 * 359.97438 * 5 3 2 36 36 H 1.09003 * 109.47331 * 60.00211 * 8 6 5 37 37 H 1.09003 * 109.47314 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.47373 * 299.99840 * 8 6 5 39 39 H 1.09004 * 109.47254 * 184.99683 * 9 6 5 40 40 H 1.09002 * 109.47136 * 304.99290 * 9 6 5 41 41 H 1.09003 * 109.46972 * 179.97438 * 12 10 9 42 42 H 1.08995 * 109.47070 * 299.99898 * 12 10 9 43 43 H 1.09001 * 109.46498 * 60.00023 * 12 10 9 44 44 H 1.00905 * 110.99652 * 81.04533 * 13 10 9 45 45 H 1.09000 * 109.46789 * 300.00427 * 14 13 10 46 46 H 1.09001 * 109.46778 * 59.99691 * 14 13 10 47 47 H 1.07995 * 119.97137 * 359.97438 * 16 15 14 48 48 H 1.08005 * 120.03090 * 180.27243 * 17 16 15 49 49 H 0.97001 * 119.99968 * 179.97438 * 23 22 20 50 50 H 1.08003 * 120.03825 * 179.97438 * 28 18 17 51 51 H 1.08002 * 119.96354 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 3.8456 3.0484 0.0000 7 1 3.1728 3.6719 -0.5888 8 6 3.8977 3.5704 1.4372 9 6 5.2479 3.0939 -0.6102 10 6 5.1759 2.6906 -2.0843 11 1 4.6954 1.7160 -2.1714 12 6 6.5907 2.6151 -2.6621 13 7 4.3960 3.6891 -2.8277 14 6 3.8032 3.1010 -4.0362 15 6 3.0131 4.1529 -4.7712 16 6 1.6717 4.3327 -4.4867 17 6 0.9463 5.2997 -5.1545 18 6 1.5623 6.0840 -6.1209 19 8 0.8505 7.0311 -6.7837 20 6 1.5334 7.8330 -7.6253 21 1 2.5824 7.6539 -7.8098 22 6 0.8891 8.8876 -8.2539 23 7 -0.3888 9.1054 -8.0295 24 14 1.8355 9.9990 -9.4194 25 1 1.7552 9.4535 -10.7982 26 1 1.2465 11.3620 -9.3912 27 1 3.2571 10.0653 -8.9952 28 6 2.9082 5.8973 -6.4083 29 6 3.6295 4.9324 -5.7330 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9877 0.9299 -0.0005 36 1 4.5706 2.9469 2.0261 37 1 4.2615 4.5979 1.4377 38 1 2.8987 3.5380 1.8720 39 1 5.6468 4.1050 -0.5293 40 1 5.8993 2.4024 -0.0757 41 1 6.5393 2.3273 -3.7122 42 1 7.0711 3.5896 -2.5751 43 1 7.1693 1.8741 -2.1105 44 1 4.9619 4.4925 -3.0568 45 1 4.5954 2.7240 -4.6830 46 1 3.1429 2.2807 -3.7547 47 1 1.1918 3.7189 -3.7388 48 1 -0.1002 5.4426 -4.9288 49 1 -0.8395 9.8434 -8.4690 50 1 3.3900 6.5054 -7.1597 51 1 4.6760 4.7864 -5.9564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133420342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:17 Heat of formation + Delta-G solvation = -83.162954 kcal Electronic energy + Delta-G solvation = -28694.674372 eV Core-core repulsion = 24785.873427 eV Total energy + Delta-G solvation = -3908.800945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.87820 -40.73231 -39.03873 -38.04505 -36.15001 -34.35473 -33.79427 -32.92682 -31.79454 -31.49804 -29.71323 -27.66254 -27.44364 -25.54995 -25.22161 -23.63193 -22.32720 -21.99888 -21.37033 -21.18671 -19.84581 -18.86420 -18.09152 -17.13784 -16.70741 -16.51287 -16.42249 -16.26252 -16.02249 -15.51042 -15.37125 -15.32583 -14.92417 -14.88778 -14.44896 -14.38430 -14.08383 -13.96216 -13.75325 -13.56234 -13.41297 -13.32768 -12.98373 -12.85866 -12.82904 -12.81379 -12.60394 -12.41167 -12.30710 -12.20182 -12.12485 -11.99113 -11.85487 -11.61493 -11.57357 -11.18083 -10.79959 -10.70423 -9.90983 -9.79267 -9.21274 -8.89333 -8.47465 -6.16139 0.58898 0.67295 1.34005 1.43930 1.52293 1.82495 2.17357 2.41578 2.78456 3.11093 3.51273 3.52876 3.76564 3.94827 4.02368 4.05371 4.13258 4.21004 4.27807 4.29903 4.32368 4.43974 4.51381 4.56678 4.60791 4.66586 4.72585 4.77384 4.78300 4.81287 4.89692 4.97194 5.00485 5.07137 5.08535 5.09399 5.14104 5.22772 5.28382 5.31434 5.36572 5.37332 5.44781 5.56891 5.70076 5.74520 5.81524 6.02224 6.18163 6.28859 6.57873 6.75314 6.96827 7.48775 7.78556 8.76205 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.002391 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.463195 B =11709.743675 C =12731.328693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C 0.500 3.500 4 O -0.593 6.593 5 N -0.710 5.710 6 C 0.145 3.855 7 H 0.063 0.937 8 C -0.158 4.158 9 C -0.104 4.104 10 C 0.084 3.916 11 H 0.080 0.920 12 C -0.177 4.177 13 N -0.690 5.690 14 C 0.130 3.870 15 C -0.155 4.155 16 C -0.049 4.049 17 C -0.209 4.209 18 C 0.116 3.884 19 O -0.235 6.235 20 C -0.414 4.414 21 H 0.103 0.897 22 C -0.025 4.025 23 N -0.923 5.923 24 Si 1.021 2.979 25 H -0.262 1.262 26 H -0.272 1.272 27 H -0.252 1.252 28 C -0.241 4.241 29 C -0.058 4.058 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.413 0.587 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.341 0.659 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.126 0.874 48 H 0.104 0.896 49 H 0.273 0.727 50 H 0.121 0.879 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.391 -21.188 16.913 32.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.288 3.712 4 O -0.473 6.473 5 N -0.362 5.362 6 C 0.041 3.959 7 H 0.081 0.919 8 C -0.216 4.216 9 C -0.142 4.142 10 C -0.026 4.026 11 H 0.098 0.902 12 C -0.236 4.236 13 N -0.321 5.321 14 C 0.001 3.999 15 C -0.156 4.156 16 C -0.067 4.067 17 C -0.228 4.228 18 C 0.065 3.935 19 O -0.141 6.141 20 C -0.490 4.490 21 H 0.120 0.880 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.840 3.160 25 H -0.187 1.187 26 H -0.196 1.196 27 H -0.175 1.175 28 C -0.260 4.260 29 C -0.077 4.077 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.250 0.750 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.160 0.840 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.144 0.856 48 H 0.122 0.878 49 H 0.082 0.918 50 H 0.139 0.861 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 15.889 -20.439 17.248 31.108 hybrid contribution 0.491 0.749 -1.232 1.523 sum 16.379 -19.690 16.016 30.208 Atomic orbital electron populations 1.21532 0.94446 1.02299 1.01456 1.21673 0.97495 0.92019 1.06456 1.21443 0.82552 0.92583 0.74626 1.90723 1.56749 1.48464 1.51359 1.45986 1.06659 1.09005 1.74571 1.20809 0.96418 0.82947 0.95762 0.91894 1.22124 1.01009 1.01839 0.96631 1.21833 0.94616 1.03528 0.94250 1.21633 0.92177 0.95364 0.93404 0.90215 1.22449 0.97201 1.02820 1.01149 1.60572 1.38834 1.09531 1.23161 1.20519 0.96129 0.93520 0.89715 1.19644 0.93939 1.01697 1.00328 1.20717 0.94193 0.95199 0.96623 1.20410 1.00508 1.01306 1.00603 1.19876 0.91925 0.89893 0.91781 1.83948 1.36793 1.41096 1.52313 1.21849 0.95864 1.09259 1.22011 0.87960 1.26649 0.97126 0.98398 1.00058 1.70200 1.11247 1.31037 1.43666 0.84561 0.78028 0.76350 0.77083 1.18673 1.19640 1.17503 1.21241 0.94036 1.04519 1.06179 1.20942 0.99490 0.93075 0.94180 0.94333 0.89781 0.93802 0.86781 0.86252 0.75033 0.90726 0.91580 0.95019 0.90466 0.88600 0.93150 0.92424 0.90427 0.84004 0.93416 0.91143 0.85568 0.87773 0.91848 0.86146 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.20 71.98 0.66 -1.61 16 2 C -0.14 -1.62 6.42 29.85 0.19 -1.43 16 3 C 0.50 10.17 7.79 87.66 0.68 10.85 16 4 O -0.59 -19.23 15.64 -3.02 -0.05 -19.27 16 5 N -0.71 -9.96 4.45 -442.55 -1.97 -11.93 16 6 C 0.15 2.55 2.52 44.99 0.11 2.66 16 7 H 0.06 1.73 7.05 -2.39 -0.02 1.71 16 8 C -0.16 -2.66 9.48 71.98 0.68 -1.98 16 9 C -0.10 -1.19 4.43 30.59 0.14 -1.05 16 10 C 0.08 1.10 2.53 44.91 0.11 1.21 16 11 H 0.08 1.01 7.28 -2.38 -0.02 0.99 16 12 C -0.18 -1.82 9.16 71.98 0.66 -1.16 16 13 N -0.69 -14.06 5.61 -495.58 -2.78 -16.84 16 14 C 0.13 2.99 5.61 85.56 0.48 3.47 16 15 C -0.16 -5.02 5.40 -19.84 -0.11 -5.13 16 16 C -0.05 -1.86 9.69 22.25 0.22 -1.64 16 17 C -0.21 -9.79 9.99 22.39 0.22 -9.57 16 18 C 0.12 6.06 6.65 22.57 0.15 6.21 16 19 O -0.23 -14.74 9.76 -22.74 -0.22 -14.96 16 20 C -0.41 -24.77 9.49 67.92 0.64 -24.12 16 21 H 0.10 5.58 5.20 -2.91 -0.02 5.56 16 22 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 23 N -0.92 -58.35 13.67 21.61 0.30 -58.05 16 24 Si 1.02 43.68 29.55 68.60 2.03 45.71 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 28 C -0.24 -10.71 9.17 22.39 0.21 -10.51 16 29 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 30 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.04 0.85 8.10 -2.39 -0.02 0.83 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.41 2.58 8.60 -92.71 -0.80 1.79 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.05 0.59 7.45 -2.39 -0.02 0.58 16 42 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 43 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.34 7.08 8.46 -89.69 -0.76 6.32 16 45 H 0.05 0.94 7.38 -2.39 -0.02 0.92 16 46 H 0.07 1.63 8.00 -2.39 -0.02 1.61 16 47 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 48 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 49 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 50 H 0.12 5.39 5.64 -2.91 -0.02 5.38 16 51 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -81.77 417.88 2.41 -79.36 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -0.63 Total: 32.59 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 5.74 Total: -36.61 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -4.45 Total: -86.82 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.27 Total: -34.24 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -81.77 2.41 -79.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133420342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.804 kcal (2) G-P(sol) polarization free energy of solvation -81.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds