Wall clock time and date at job start Tue Mar 31 2020 20:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46744 * 2 1 4 4 O 1.21284 * 120.00564 * 0.02562 * 3 2 1 5 5 N 1.34783 * 119.99934 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00088 * 180.02562 * 5 3 2 7 7 H 1.09003 * 109.46917 * 35.00440 * 6 5 3 8 8 C 1.53000 * 109.47283 * 275.00418 * 6 5 3 9 9 C 1.53005 * 109.46960 * 155.00365 * 6 5 3 10 10 C 1.53005 * 109.46849 * 295.00064 * 9 6 5 11 11 H 1.08997 * 109.46858 * 304.99852 * 10 9 6 12 12 C 1.52997 * 109.46610 * 185.00107 * 10 9 6 13 13 N 1.46902 * 109.47320 * 65.00097 * 10 9 6 14 14 C 1.46900 * 111.00075 * 204.99744 * 13 10 9 15 15 C 1.50694 * 109.46875 * 180.02562 * 14 13 10 16 16 C 1.38296 * 119.93377 * 90.00373 * 15 14 13 17 17 C 1.38098 * 120.07035 * 179.69926 * 16 15 14 18 18 C 1.38875 * 119.93249 * 0.27809 * 17 16 15 19 19 O 1.35746 * 120.07087 * 180.02562 * 18 17 16 20 20 C 1.34831 * 117.00106 * 354.45526 * 19 18 17 21 21 H 1.08004 * 119.99708 * 5.06598 * 20 19 18 22 22 C 1.38658 * 120.00074 * 185.05736 * 20 19 18 23 23 N 1.31557 * 120.00233 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99685 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47220 * 60.00536 * 24 22 20 26 26 H 1.48502 * 109.46851 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47112 * 300.00267 * 24 22 20 28 28 C 1.38877 * 119.86135 * 359.97438 * 18 17 16 29 29 C 1.38098 * 119.93069 * 0.02562 * 28 18 17 30 30 H 1.09003 * 109.46839 * 59.99889 * 1 2 3 31 31 H 1.08995 * 109.47064 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47520 * 300.00166 * 1 2 3 33 33 H 1.08995 * 109.46938 * 240.00302 * 2 1 3 34 34 H 1.08996 * 109.46848 * 119.99717 * 2 1 3 35 35 H 0.96998 * 119.99560 * 0.02562 * 5 3 2 36 36 H 1.09003 * 109.47163 * 299.99872 * 8 6 5 37 37 H 1.08997 * 109.47098 * 59.99684 * 8 6 5 38 38 H 1.08995 * 109.46963 * 180.02562 * 8 6 5 39 39 H 1.08999 * 109.47100 * 175.00512 * 9 6 5 40 40 H 1.08999 * 109.47156 * 55.00135 * 9 6 5 41 41 H 1.09002 * 109.47650 * 60.00436 * 12 10 9 42 42 H 1.09005 * 109.46785 * 180.02562 * 12 10 9 43 43 H 1.08997 * 109.47303 * 299.99473 * 12 10 9 44 44 H 1.00897 * 110.99384 * 81.04357 * 13 10 9 45 45 H 1.09005 * 109.46946 * 60.00042 * 14 13 10 46 46 H 1.09002 * 109.47098 * 300.00110 * 14 13 10 47 47 H 1.07998 * 119.96537 * 359.96916 * 16 15 14 48 48 H 1.08004 * 120.03589 * 180.29008 * 17 16 15 49 49 H 0.96992 * 119.99905 * 179.97438 * 23 22 20 50 50 H 1.08004 * 120.03673 * 180.02562 * 28 18 17 51 51 H 1.08004 * 119.96716 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0484 0.0011 7 1 3.1729 3.6713 0.5906 8 6 3.8975 3.5716 -1.4357 9 6 5.2481 3.0933 0.6111 10 6 5.1763 2.6887 2.0850 11 1 4.4571 3.3242 2.6015 12 6 6.5554 2.8531 2.7266 13 7 4.7526 1.2858 2.1876 14 6 4.1115 1.0229 3.4830 15 6 3.6919 -0.4228 3.5515 16 6 4.5648 -1.3717 4.0518 17 6 4.1809 -2.6964 4.1216 18 6 2.9190 -3.0763 3.6835 19 8 2.5386 -4.3776 3.7513 20 6 3.4709 -5.2681 4.1459 21 1 4.4426 -4.9251 4.4692 22 6 3.1820 -6.6242 4.1368 23 7 1.9985 -7.0421 3.7427 24 14 4.4735 -7.8579 4.6842 25 1 4.8562 -7.5821 6.0922 26 1 3.9204 -9.2322 4.5812 27 1 5.6709 -7.7402 3.8136 28 6 2.0467 -2.1218 3.1767 29 6 2.4364 -0.7987 3.1095 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9877 0.9299 0.0005 36 1 4.5703 2.9487 -2.0252 37 1 2.8985 3.5396 -1.8703 38 1 4.2612 4.5991 -1.4353 39 1 5.6470 4.1045 0.5310 40 1 5.8994 2.4023 0.0760 41 1 6.8699 3.8940 2.6506 42 1 6.5044 2.5645 3.7765 43 1 7.2747 2.2176 2.2101 44 1 5.5303 0.6613 2.0356 45 1 3.2348 1.6617 3.5907 46 1 4.8165 1.2348 4.2869 47 1 5.5460 -1.0758 4.3922 48 1 4.8613 -3.4363 4.5168 49 1 1.7966 -7.9907 3.7360 50 1 1.0645 -2.4140 2.8356 51 1 1.7584 -0.0559 2.7159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133420344.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:25 Heat of formation + Delta-G solvation = -56.485782 kcal Electronic energy + Delta-G solvation = -29749.543284 eV Core-core repulsion = 25841.899148 eV Total energy + Delta-G solvation = -3907.644136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.77312 -39.08935 -37.88970 -36.64624 -34.98222 -32.72518 -32.45486 -31.83280 -30.45260 -30.19724 -28.44016 -27.01152 -25.56820 -24.42775 -23.98770 -22.00899 -21.44957 -20.94052 -20.33120 -19.90320 -18.03244 -17.12301 -16.86388 -16.30872 -15.47147 -15.33686 -15.20204 -14.93626 -14.56553 -14.19286 -14.07085 -13.87211 -13.67240 -13.57064 -13.38640 -13.04327 -12.91415 -12.73757 -12.63395 -12.50022 -12.33878 -12.16137 -11.99248 -11.79535 -11.59909 -11.50467 -11.45803 -11.29100 -11.05055 -10.95749 -10.85281 -10.74748 -10.62458 -10.53320 -10.43494 -9.51423 -9.37326 -8.88842 -8.85292 -8.27915 -8.18293 -7.22014 -6.48299 -4.07378 2.17363 2.23924 2.97851 3.10299 3.10867 3.14179 3.47993 3.93371 4.16392 4.43519 4.62201 4.81069 4.99883 5.02730 5.06661 5.12269 5.21052 5.24695 5.29729 5.32122 5.34676 5.38640 5.40132 5.42988 5.59809 5.61412 5.67148 5.69554 5.75935 5.82224 5.85404 5.89964 5.93848 6.03109 6.08454 6.15025 6.17187 6.20583 6.38738 6.40840 6.66738 6.79271 6.86002 6.98042 7.05939 7.22806 7.31126 7.39912 7.45531 7.78818 7.86522 7.96324 8.57420 8.97174 9.67116 10.69482 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.002988 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.794771 B = 9368.044144 C =10665.982449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.157 4.157 3 C 0.518 3.482 4 O -0.562 6.562 5 N -0.697 5.697 6 C 0.152 3.848 7 H 0.080 0.920 8 C -0.164 4.164 9 C -0.116 4.116 10 C 0.081 3.919 11 H 0.076 0.924 12 C -0.182 4.182 13 N -0.674 5.674 14 C 0.120 3.880 15 C -0.183 4.183 16 C -0.065 4.065 17 C -0.234 4.234 18 C 0.157 3.843 19 O -0.177 6.177 20 C -0.393 4.393 21 H 0.091 0.909 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.193 4.193 29 C -0.056 4.056 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.405 0.595 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.339 0.661 45 H 0.067 0.933 46 H 0.027 0.973 47 H 0.101 0.899 48 H 0.125 0.875 49 H 0.271 0.729 50 H 0.116 0.884 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.895 17.726 -6.130 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.197 4.197 3 C 0.305 3.695 4 O -0.442 6.442 5 N -0.348 5.348 6 C 0.046 3.954 7 H 0.098 0.902 8 C -0.223 4.223 9 C -0.154 4.154 10 C -0.029 4.029 11 H 0.094 0.906 12 C -0.241 4.241 13 N -0.305 5.305 14 C -0.008 4.008 15 C -0.184 4.184 16 C -0.084 4.084 17 C -0.253 4.253 18 C 0.102 3.898 19 O -0.080 6.080 20 C -0.469 4.469 21 H 0.108 0.892 22 C -0.164 4.164 23 N -0.496 5.496 24 Si 0.764 3.236 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.213 4.213 29 C -0.075 4.075 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.242 0.758 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.157 0.843 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.119 0.881 48 H 0.142 0.858 49 H 0.081 0.919 50 H 0.134 0.866 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.401 18.138 -6.524 20.311 hybrid contribution 1.933 -1.034 0.981 2.401 sum 8.334 17.104 -5.544 19.818 Atomic orbital electron populations 1.21483 0.93494 1.01515 1.02622 1.21830 0.98320 0.94228 1.05290 1.20688 0.82266 0.91542 0.75012 1.90640 1.55710 1.46723 1.51078 1.45868 1.06889 1.08088 1.73998 1.20703 0.94794 0.84287 0.95573 0.90234 1.22205 1.02294 1.00665 0.97094 1.21930 0.96424 1.01683 0.95391 1.21592 0.94885 0.90992 0.95408 0.90598 1.22500 0.98277 1.02138 1.01168 1.60739 1.33501 1.03136 1.33146 1.20607 0.97581 0.93780 0.88850 1.19101 0.95980 0.93886 1.09445 1.20570 0.97561 0.92562 0.97663 1.21116 0.98188 0.96436 1.09602 1.19390 0.92157 0.86016 0.92194 1.83980 1.38113 1.11456 1.74435 1.21262 0.94950 0.85976 1.44715 0.89176 1.25278 0.97553 0.96791 0.96801 1.70022 1.20211 1.16006 1.43366 0.85803 0.79517 0.78984 0.79257 1.19533 1.20251 1.19504 1.20220 1.00434 0.92015 1.08609 1.20482 0.95252 0.94421 0.97347 0.92668 0.92099 0.92230 0.89644 0.87352 0.75843 0.92725 0.92234 0.92203 0.90630 0.91311 0.92334 0.92650 0.92430 0.84258 0.91437 0.95523 0.88074 0.85762 0.91926 0.86581 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.20 37.16 0.34 -1.36 16 2 C -0.16 -1.96 6.37 -27.88 -0.18 -2.14 16 3 C 0.52 6.97 7.79 -10.98 -0.09 6.88 16 4 O -0.56 -9.45 15.64 5.55 0.09 -9.37 16 5 N -0.70 -7.48 3.80 -53.80 -0.20 -7.68 16 6 C 0.15 1.46 2.57 -67.93 -0.17 1.28 16 7 H 0.08 0.94 7.58 -51.93 -0.39 0.55 16 8 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 9 C -0.12 -0.85 4.54 -26.73 -0.12 -0.97 16 10 C 0.08 0.67 2.59 -67.71 -0.18 0.49 16 11 H 0.08 0.71 7.80 -51.93 -0.41 0.31 16 12 C -0.18 -1.32 9.16 37.16 0.34 -0.98 16 13 N -0.67 -6.56 3.84 -107.99 -0.42 -6.97 16 14 C 0.12 1.44 5.61 -4.98 -0.03 1.41 16 15 C -0.18 -2.78 5.40 -104.58 -0.56 -3.35 16 16 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 17 C -0.23 -4.78 9.17 -39.40 -0.36 -5.14 16 18 C 0.16 3.59 6.65 -39.11 -0.26 3.33 16 19 O -0.18 -4.89 9.76 0.06 0.00 -4.89 16 20 C -0.39 -10.68 9.49 30.89 0.29 -10.39 16 21 H 0.09 2.26 5.20 -52.48 -0.27 1.98 16 22 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 23 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 24 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 26 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 28 C -0.19 -3.83 9.98 -39.40 -0.39 -4.23 16 29 C -0.06 -0.93 7.85 -39.61 -0.31 -1.24 16 30 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.11 1.44 4.87 -51.93 -0.25 1.19 16 35 H 0.41 4.01 7.59 -40.82 -0.31 3.70 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.45 7.45 -51.93 -0.39 0.06 16 43 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 44 H 0.34 3.27 8.46 -39.29 -0.33 2.94 16 45 H 0.07 0.86 8.00 -51.93 -0.42 0.45 16 46 H 0.03 0.31 7.38 -51.93 -0.38 -0.07 16 47 H 0.10 1.44 8.06 -52.49 -0.42 1.02 16 48 H 0.12 2.58 5.64 -52.48 -0.30 2.28 16 49 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 50 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 51 H 0.11 1.69 7.01 -52.48 -0.37 1.32 16 LS Contribution 409.50 15.07 6.17 6.17 Total: -1.00 -30.42 409.50 -8.87 -39.29 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.44 Total: 10.42 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -1.80 Total: -17.97 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.14 Total: -38.70 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.26 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.42 -8.87 -39.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133420344.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.191 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds