Wall clock time and date at job start Tue Mar 31 2020 20:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46744 * 2 1 4 4 O 1.21284 * 120.00564 * 0.02562 * 3 2 1 5 5 N 1.34783 * 119.99934 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00088 * 180.02562 * 5 3 2 7 7 H 1.09003 * 109.46917 * 35.00440 * 6 5 3 8 8 C 1.53000 * 109.47283 * 275.00418 * 6 5 3 9 9 C 1.53005 * 109.46960 * 155.00365 * 6 5 3 10 10 C 1.53005 * 109.46849 * 295.00064 * 9 6 5 11 11 H 1.08997 * 109.46858 * 304.99852 * 10 9 6 12 12 C 1.52997 * 109.46610 * 185.00107 * 10 9 6 13 13 N 1.46902 * 109.47320 * 65.00097 * 10 9 6 14 14 C 1.46900 * 111.00075 * 204.99744 * 13 10 9 15 15 C 1.50694 * 109.46875 * 180.02562 * 14 13 10 16 16 C 1.38296 * 119.93377 * 90.00373 * 15 14 13 17 17 C 1.38098 * 120.07035 * 179.69926 * 16 15 14 18 18 C 1.38875 * 119.93249 * 0.27809 * 17 16 15 19 19 O 1.35746 * 120.07087 * 180.02562 * 18 17 16 20 20 C 1.34831 * 117.00106 * 354.45526 * 19 18 17 21 21 H 1.08004 * 119.99708 * 5.06598 * 20 19 18 22 22 C 1.38658 * 120.00074 * 185.05736 * 20 19 18 23 23 N 1.31557 * 120.00233 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99685 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47220 * 60.00536 * 24 22 20 26 26 H 1.48502 * 109.46851 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47112 * 300.00267 * 24 22 20 28 28 C 1.38877 * 119.86135 * 359.97438 * 18 17 16 29 29 C 1.38098 * 119.93069 * 0.02562 * 28 18 17 30 30 H 1.09003 * 109.46839 * 59.99889 * 1 2 3 31 31 H 1.08995 * 109.47064 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47520 * 300.00166 * 1 2 3 33 33 H 1.08995 * 109.46938 * 240.00302 * 2 1 3 34 34 H 1.08996 * 109.46848 * 119.99717 * 2 1 3 35 35 H 0.96998 * 119.99560 * 0.02562 * 5 3 2 36 36 H 1.09003 * 109.47163 * 299.99872 * 8 6 5 37 37 H 1.08997 * 109.47098 * 59.99684 * 8 6 5 38 38 H 1.08995 * 109.46963 * 180.02562 * 8 6 5 39 39 H 1.08999 * 109.47100 * 175.00512 * 9 6 5 40 40 H 1.08999 * 109.47156 * 55.00135 * 9 6 5 41 41 H 1.09002 * 109.47650 * 60.00436 * 12 10 9 42 42 H 1.09005 * 109.46785 * 180.02562 * 12 10 9 43 43 H 1.08997 * 109.47303 * 299.99473 * 12 10 9 44 44 H 1.00897 * 110.99384 * 81.04357 * 13 10 9 45 45 H 1.09005 * 109.46946 * 60.00042 * 14 13 10 46 46 H 1.09002 * 109.47098 * 300.00110 * 14 13 10 47 47 H 1.07998 * 119.96537 * 359.96916 * 16 15 14 48 48 H 1.08004 * 120.03589 * 180.29008 * 17 16 15 49 49 H 0.96992 * 119.99905 * 179.97438 * 23 22 20 50 50 H 1.08004 * 120.03673 * 180.02562 * 28 18 17 51 51 H 1.08004 * 119.96716 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0484 0.0011 7 1 3.1729 3.6713 0.5906 8 6 3.8975 3.5716 -1.4357 9 6 5.2481 3.0933 0.6111 10 6 5.1763 2.6887 2.0850 11 1 4.4571 3.3242 2.6015 12 6 6.5554 2.8531 2.7266 13 7 4.7526 1.2858 2.1876 14 6 4.1115 1.0229 3.4830 15 6 3.6919 -0.4228 3.5515 16 6 4.5648 -1.3717 4.0518 17 6 4.1809 -2.6964 4.1216 18 6 2.9190 -3.0763 3.6835 19 8 2.5386 -4.3776 3.7513 20 6 3.4709 -5.2681 4.1459 21 1 4.4426 -4.9251 4.4692 22 6 3.1820 -6.6242 4.1368 23 7 1.9985 -7.0421 3.7427 24 14 4.4735 -7.8579 4.6842 25 1 4.8562 -7.5821 6.0922 26 1 3.9204 -9.2322 4.5812 27 1 5.6709 -7.7402 3.8136 28 6 2.0467 -2.1218 3.1767 29 6 2.4364 -0.7987 3.1095 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9877 0.9299 0.0005 36 1 4.5703 2.9487 -2.0252 37 1 2.8985 3.5396 -1.8703 38 1 4.2612 4.5991 -1.4353 39 1 5.6470 4.1045 0.5310 40 1 5.8994 2.4023 0.0760 41 1 6.8699 3.8940 2.6506 42 1 6.5044 2.5645 3.7765 43 1 7.2747 2.2176 2.2101 44 1 5.5303 0.6613 2.0356 45 1 3.2348 1.6617 3.5907 46 1 4.8165 1.2348 4.2869 47 1 5.5460 -1.0758 4.3922 48 1 4.8613 -3.4363 4.5168 49 1 1.7966 -7.9907 3.7360 50 1 1.0645 -2.4140 2.8356 51 1 1.7584 -0.0559 2.7159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133420344.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:24 Heat of formation + Delta-G solvation = -74.754510 kcal Electronic energy + Delta-G solvation = -29750.335476 eV Core-core repulsion = 25841.899148 eV Total energy + Delta-G solvation = -3908.436327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.89118 -40.58899 -38.97044 -38.04963 -35.96751 -34.31634 -33.76056 -32.96936 -31.71871 -31.42061 -29.61534 -27.65908 -27.39569 -25.45457 -25.21641 -23.57649 -22.29241 -21.97939 -21.46393 -20.90470 -19.80920 -18.82629 -17.92840 -17.19558 -16.66190 -16.45027 -16.36135 -16.18708 -16.02217 -15.43637 -15.41636 -15.20300 -14.92370 -14.86001 -14.39264 -14.26983 -13.95954 -13.84815 -13.74782 -13.53506 -13.38579 -13.33097 -12.92058 -12.87839 -12.80953 -12.70472 -12.57264 -12.36449 -12.28725 -12.21049 -12.14182 -11.93909 -11.86494 -11.57202 -11.53582 -11.12576 -10.75694 -10.61354 -9.81378 -9.71256 -9.12690 -8.83027 -8.44006 -6.11787 0.64237 0.72589 1.36574 1.46759 1.52396 1.91275 2.19648 2.56061 2.82902 3.15634 3.52919 3.56578 3.76357 4.05269 4.07145 4.09267 4.17473 4.26605 4.30065 4.33619 4.35210 4.44282 4.50751 4.55403 4.66019 4.69771 4.77316 4.80525 4.82037 4.84403 4.92846 5.04552 5.04791 5.08678 5.11987 5.13111 5.13509 5.18473 5.31165 5.33330 5.34372 5.36383 5.44499 5.62076 5.76333 5.86776 5.88849 6.06357 6.18386 6.29302 6.62813 6.90717 7.01018 7.57830 7.83194 8.78977 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.002988 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.794771 B = 9368.044144 C =10665.982449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.154 4.154 3 C 0.515 3.485 4 O -0.600 6.600 5 N -0.684 5.684 6 C 0.150 3.850 7 H 0.056 0.944 8 C -0.159 4.159 9 C -0.105 4.105 10 C 0.085 3.915 11 H 0.066 0.934 12 C -0.176 4.176 13 N -0.676 5.676 14 C 0.127 3.873 15 C -0.151 4.151 16 C -0.058 4.058 17 C -0.240 4.240 18 C 0.117 3.883 19 O -0.233 6.233 20 C -0.411 4.411 21 H 0.102 0.898 22 C -0.023 4.023 23 N -0.921 5.921 24 Si 1.015 2.985 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.256 1.256 28 C -0.200 4.200 29 C -0.047 4.047 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.412 0.588 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.345 0.655 45 H 0.064 0.936 46 H 0.043 0.957 47 H 0.138 0.862 48 H 0.116 0.884 49 H 0.272 0.728 50 H 0.108 0.892 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.339 20.145 -6.234 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.194 4.194 3 C 0.302 3.698 4 O -0.482 6.482 5 N -0.334 5.334 6 C 0.045 3.955 7 H 0.075 0.925 8 C -0.217 4.217 9 C -0.144 4.144 10 C -0.025 4.025 11 H 0.084 0.916 12 C -0.234 4.234 13 N -0.308 5.308 14 C -0.002 4.002 15 C -0.152 4.152 16 C -0.076 4.076 17 C -0.260 4.260 18 C 0.066 3.934 19 O -0.140 6.140 20 C -0.487 4.487 21 H 0.119 0.881 22 C -0.220 4.220 23 N -0.559 5.559 24 Si 0.835 3.165 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.180 1.180 28 C -0.219 4.219 29 C -0.065 4.065 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.249 0.751 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.164 0.836 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.156 0.844 48 H 0.134 0.866 49 H 0.081 0.919 50 H 0.126 0.874 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.902 20.621 -6.633 23.817 hybrid contribution 0.889 -1.356 0.945 1.877 sum 10.791 19.265 -5.688 22.802 Atomic orbital electron populations 1.21458 0.93961 1.01645 1.01940 1.21805 0.97996 0.93921 1.05646 1.20811 0.82892 0.91316 0.74766 1.90627 1.56789 1.47725 1.53102 1.45845 1.06051 1.09056 1.72460 1.20809 0.95722 0.83015 0.95991 0.92532 1.22147 1.01094 1.02070 0.96390 1.21881 0.94773 1.03261 0.94443 1.21582 0.95384 0.89422 0.96091 0.91611 1.22421 0.97359 1.03063 1.00591 1.60644 1.34103 1.04472 1.31533 1.20506 0.98211 0.90768 0.90675 1.19542 0.94619 0.95675 1.05364 1.20886 0.99215 0.90871 0.96628 1.21220 0.97086 0.98115 1.09530 1.19895 0.94109 0.85174 0.94178 1.83946 1.39375 1.13315 1.77354 1.21757 0.95530 0.86669 1.44781 0.88076 1.26542 0.99935 0.98691 0.96827 1.70177 1.22882 1.16358 1.46526 0.84692 0.76653 0.75848 0.79322 1.18286 1.19886 1.18030 1.20369 0.99968 0.92977 1.08571 1.20658 0.96174 0.93135 0.96581 0.92850 0.91517 0.93425 0.88014 0.88083 0.75059 0.91557 0.94848 0.90401 0.88590 0.90068 0.91239 0.93292 0.91743 0.83599 0.91757 0.93884 0.84441 0.86584 0.91945 0.87371 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.20 71.98 0.66 -2.73 16 2 C -0.15 -3.73 6.37 29.85 0.19 -3.54 16 3 C 0.51 13.36 7.79 87.66 0.68 14.04 16 4 O -0.60 -20.12 15.64 -3.04 -0.05 -20.17 16 5 N -0.68 -13.25 3.80 -442.52 -1.68 -14.93 16 6 C 0.15 2.51 2.57 44.99 0.12 2.63 16 7 H 0.06 1.25 7.58 -2.39 -0.02 1.24 16 8 C -0.16 -2.46 9.48 71.98 0.68 -1.78 16 9 C -0.11 -1.11 4.54 30.60 0.14 -0.97 16 10 C 0.08 1.06 2.59 44.92 0.12 1.17 16 11 H 0.07 1.01 7.80 -2.39 -0.02 0.99 16 12 C -0.18 -1.76 9.16 71.98 0.66 -1.10 16 13 N -0.68 -10.55 3.84 -495.57 -1.90 -12.45 16 14 C 0.13 2.56 5.61 85.56 0.48 3.04 16 15 C -0.15 -4.15 5.40 -19.84 -0.11 -4.26 16 16 C -0.06 -1.75 9.69 22.25 0.22 -1.53 16 17 C -0.24 -9.73 9.17 22.39 0.21 -9.53 16 18 C 0.12 5.54 6.65 22.58 0.15 5.69 16 19 O -0.23 -13.69 9.76 -22.71 -0.22 -13.92 16 20 C -0.41 -23.38 9.49 67.92 0.64 -22.73 16 21 H 0.10 5.23 5.20 -2.91 -0.02 5.21 16 22 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 23 N -0.92 -55.99 13.67 21.61 0.30 -55.70 16 24 Si 1.02 42.00 29.55 68.60 2.03 44.03 16 25 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 27 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 28 C -0.20 -8.08 9.98 22.39 0.22 -7.86 16 29 C -0.05 -1.49 7.85 22.25 0.17 -1.31 16 30 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.10 2.59 4.87 -2.39 -0.01 2.58 16 35 H 0.41 6.95 7.59 -92.71 -0.70 6.25 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.05 0.58 7.45 -2.38 -0.02 0.56 16 43 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 44 H 0.35 5.05 8.46 -89.70 -0.76 4.29 16 45 H 0.06 1.42 8.00 -2.38 -0.02 1.40 16 46 H 0.04 0.79 7.38 -2.39 -0.02 0.77 16 47 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 48 H 0.12 4.84 5.64 -2.91 -0.02 4.82 16 49 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 50 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 51 H 0.13 3.69 7.01 -2.91 -0.02 3.67 16 Total: -1.00 -71.96 409.50 3.64 -68.32 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -0.53 Total: 36.38 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 5.70 Total: -31.57 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -3.29 Total: -83.08 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.27 Total: -34.08 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -71.96 3.64 -68.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133420344.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.435 kcal (2) G-P(sol) polarization free energy of solvation -71.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds