Wall clock time and date at job start Tue Mar 31 2020 19:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35912 * 117.00151 * 180.02562 * 4 3 2 6 6 C 1.38854 * 119.98232 * 359.72082 * 5 4 3 7 7 C 1.38240 * 120.23508 * 179.72541 * 6 5 4 8 8 C 1.38008 * 120.20927 * 0.55538 * 7 6 5 9 9 C 1.39564 * 119.96259 * 359.72015 * 8 7 6 10 10 C 1.47858 * 120.11688 * 179.97438 * 9 8 7 11 11 O 1.21548 * 120.00150 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00270 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00186 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47454 * 325.00429 * 13 12 10 15 15 C 1.53006 * 109.46733 * 85.00534 * 13 12 10 16 16 C 1.53006 * 109.47181 * 205.00095 * 13 12 10 17 17 C 1.53002 * 109.46658 * 65.00402 * 16 13 12 18 18 H 1.09001 * 109.46906 * 55.00149 * 17 16 13 19 19 C 1.53006 * 109.46681 * 174.99712 * 17 16 13 20 20 N 1.46500 * 109.47114 * 294.99918 * 17 16 13 21 21 C 1.36938 * 119.99556 * 155.00654 * 20 17 16 22 22 H 1.07990 * 120.00240 * 359.97438 * 21 20 17 23 23 C 1.38815 * 119.99400 * 180.02562 * 21 20 17 24 24 N 1.31617 * 120.00268 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99648 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46854 * 59.99652 * 25 23 21 27 27 H 1.48502 * 109.46848 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47036 * 299.99562 * 25 23 21 29 29 C 1.38454 * 119.98389 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 33 33 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 34 34 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 36 36 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 37 37 H 1.07999 * 119.87774 * 359.97438 * 6 5 4 38 38 H 1.07997 * 119.90034 * 180.27565 * 7 6 5 39 39 H 1.07999 * 120.02064 * 179.70705 * 8 7 6 40 40 H 0.97000 * 119.99268 * 0.02562 * 12 10 9 41 41 H 1.09002 * 109.47107 * 179.97438 * 15 13 12 42 42 H 1.08997 * 109.47342 * 299.99785 * 15 13 12 43 43 H 1.08998 * 109.47236 * 59.99762 * 15 13 12 44 44 H 1.08997 * 109.46877 * 185.00433 * 16 13 12 45 45 H 1.08995 * 109.46940 * 305.00396 * 16 13 12 46 46 H 1.09001 * 109.46764 * 179.97438 * 19 17 16 47 47 H 1.08997 * 109.46976 * 300.00062 * 19 17 16 48 48 H 1.09000 * 109.46771 * 60.00115 * 19 17 16 49 49 H 0.97001 * 120.00096 * 334.99988 * 20 17 16 50 50 H 0.96999 * 120.00146 * 180.02562 * 24 23 21 51 51 H 1.07998 * 120.10414 * 359.97179 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0861 2.6534 -0.0001 6 6 3.3295 3.8177 -0.0050 7 6 3.9517 5.0521 0.0012 8 6 5.3293 5.1354 0.0006 9 6 6.0980 3.9706 -0.0002 10 6 7.5742 4.0559 -0.0014 11 8 8.2416 3.0401 -0.0026 12 7 8.1797 5.2600 -0.0011 13 6 9.6422 5.3445 -0.0017 14 1 10.0537 4.5247 0.5871 15 6 10.1579 5.2492 -1.4390 16 6 10.0762 6.6788 0.6085 17 6 9.6689 6.7219 2.0826 18 1 10.0796 5.8539 2.5986 19 6 10.2114 8.0005 2.7244 20 7 8.2077 6.7054 2.1862 21 6 7.6072 6.2333 3.3228 22 1 8.2108 5.8728 4.1425 23 6 6.2226 6.2172 3.4207 24 7 5.4870 6.6561 2.4214 25 14 5.4034 5.5726 4.9708 26 1 5.8360 6.3872 6.1346 27 1 3.9283 5.6626 4.8251 28 1 5.7946 4.1562 5.1851 29 6 5.4687 2.7253 -0.0012 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 2.2512 3.7586 -0.0095 38 1 3.3580 5.9543 0.0019 39 1 5.8122 6.1014 0.0007 40 1 7.6470 6.0706 0.0003 41 1 11.2461 5.3125 -1.4396 42 1 9.8487 4.2986 -1.8737 43 1 9.7463 6.0689 -2.0278 44 1 11.1584 6.7804 0.5273 45 1 9.5934 7.4968 0.0740 46 1 9.9209 8.0315 3.7745 47 1 11.2986 8.0127 2.6472 48 1 9.8008 8.8684 2.2084 49 1 7.6656 7.0290 1.4498 50 1 4.5195 6.6452 2.4900 51 1 6.0583 1.8205 -0.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134520224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:56 Heat of formation + Delta-G solvation = -47.154151 kcal Electronic energy + Delta-G solvation = -30145.620243 eV Core-core repulsion = 26238.380757 eV Total energy + Delta-G solvation = -3907.239486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.95761 -39.09089 -37.13204 -36.42316 -34.13495 -33.96916 -32.30513 -31.09113 -30.25418 -29.20525 -28.39757 -26.53443 -26.31479 -23.69385 -23.64581 -21.89177 -21.73018 -20.65189 -20.20543 -19.54687 -18.03083 -17.17491 -16.21205 -16.13757 -15.90012 -15.52794 -15.10402 -14.79284 -14.37047 -14.08098 -13.87914 -13.82146 -13.60573 -13.37012 -13.11479 -12.91763 -12.68787 -12.47708 -12.23903 -12.19425 -12.07986 -11.86924 -11.72665 -11.64150 -11.41443 -11.22069 -11.11953 -10.97852 -10.80924 -10.71505 -10.48630 -10.46996 -10.33500 -10.25832 -9.90205 -9.66237 -9.21136 -8.94285 -8.50872 -8.25409 -7.69617 -6.90516 -5.80294 -3.02817 1.44840 2.04945 3.31518 3.44496 3.48142 3.52129 3.55775 3.93775 4.53818 4.60587 4.75657 4.77636 5.07819 5.10738 5.20553 5.26208 5.28379 5.37814 5.43978 5.50499 5.51890 5.58028 5.61261 5.70861 5.74755 5.86072 5.90084 5.90503 5.93523 6.00048 6.03140 6.04073 6.10798 6.16311 6.25834 6.39227 6.44097 6.45762 6.58190 6.61502 6.73142 6.86640 6.98478 7.06150 7.07416 7.16522 7.25217 7.71458 7.78681 8.26012 8.40114 8.96805 9.51888 10.04096 10.40232 11.41857 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.003947 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.730367 B = 7092.434783 C = 8706.058607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.320 6.320 5 C 0.097 3.903 6 C -0.189 4.189 7 C -0.085 4.085 8 C -0.049 4.049 9 C -0.099 4.099 10 C 0.572 3.428 11 O -0.561 6.561 12 N -0.692 5.692 13 C 0.150 3.850 14 H 0.083 0.917 15 C -0.162 4.162 16 C -0.133 4.133 17 C 0.168 3.832 18 H 0.048 0.952 19 C -0.163 4.163 20 N -0.715 5.715 21 C -0.227 4.227 22 H 0.065 0.935 23 C -0.005 4.005 24 N -0.925 5.925 25 Si 0.898 3.102 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.289 1.289 29 C -0.097 4.097 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.404 0.596 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.035 0.965 48 H 0.044 0.956 49 H 0.376 0.624 50 H 0.254 0.746 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 -3.540 -9.094 10.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.015 4.015 4 O -0.234 6.234 5 C 0.053 3.947 6 C -0.208 4.208 7 C -0.103 4.103 8 C -0.068 4.068 9 C -0.102 4.102 10 C 0.360 3.640 11 O -0.442 6.442 12 N -0.345 5.345 13 C 0.045 3.955 14 H 0.101 0.899 15 C -0.221 4.221 16 C -0.172 4.172 17 C 0.059 3.941 18 H 0.066 0.934 19 C -0.223 4.223 20 N -0.358 5.358 21 C -0.358 4.358 22 H 0.083 0.917 23 C -0.201 4.201 24 N -0.573 5.573 25 Si 0.730 3.270 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.216 1.216 29 C -0.116 4.116 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.242 0.758 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.211 0.789 50 H 0.064 0.936 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.809 -4.483 -8.916 10.367 hybrid contribution -1.258 0.424 1.053 1.694 sum -4.066 -4.058 -7.863 9.738 Atomic orbital electron populations 1.21685 0.94501 1.02277 1.02173 1.21473 0.95798 0.95238 1.03623 1.22769 0.79301 0.98284 1.01184 1.86011 1.20528 1.27325 1.89584 1.18643 0.91882 0.83840 1.00315 1.21287 0.99367 0.92728 1.07412 1.20749 0.94860 0.96341 0.98369 1.21236 0.93531 0.97769 0.94286 1.19618 0.93062 0.93348 1.04216 1.18027 0.87166 0.83429 0.75330 1.90673 1.66322 1.35376 1.51814 1.45867 1.06718 1.08375 1.73491 1.20810 0.80663 0.98588 0.95475 0.89867 1.22210 1.00648 1.02035 0.97179 1.22212 1.00890 0.96254 0.97849 1.20294 0.86401 0.95475 0.91970 0.93406 1.22415 0.98132 1.00023 1.01728 1.42421 0.99188 1.75783 1.18376 1.19122 0.89641 1.33041 0.93964 0.91674 1.24473 0.95952 1.02111 0.97551 1.69496 1.04520 1.52714 1.30577 0.86399 0.78458 0.78780 0.83396 1.21686 1.21853 1.21559 1.20289 0.90979 0.98056 1.02306 0.91915 0.92380 0.92446 0.90940 0.90880 0.92287 0.92370 0.86279 0.85829 0.84400 0.75753 0.92153 0.92342 0.92821 0.90795 0.91775 0.92898 0.94610 0.93637 0.78886 0.93557 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.15 0.37 -0.78 16 2 C -0.12 -1.23 6.30 -26.74 -0.17 -1.40 16 3 C 0.06 0.74 4.74 37.16 0.18 0.91 16 4 O -0.32 -5.25 10.13 -19.46 -0.20 -5.44 16 5 C 0.10 1.75 6.68 -39.27 -0.26 1.49 16 6 C -0.19 -3.13 9.03 -39.35 -0.36 -3.48 16 7 C -0.08 -1.48 10.03 -39.66 -0.40 -1.88 16 8 C -0.05 -0.93 7.84 -39.17 -0.31 -1.23 16 9 C -0.10 -2.01 5.87 -104.99 -0.62 -2.62 16 10 C 0.57 11.99 7.74 -12.32 -0.10 11.89 16 11 O -0.56 -13.05 16.01 5.32 0.09 -12.96 16 12 N -0.69 -12.67 3.75 -54.74 -0.21 -12.87 16 13 C 0.15 2.43 2.57 -67.93 -0.17 2.26 16 14 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 15 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 16 C -0.13 -1.98 4.43 -26.73 -0.12 -2.10 16 17 C 0.17 3.09 2.89 -67.93 -0.20 2.90 16 18 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 19 C -0.16 -2.75 9.49 37.16 0.35 -2.40 16 20 N -0.71 -15.71 3.84 -53.42 -0.21 -15.92 16 21 C -0.23 -5.82 9.93 -15.06 -0.15 -5.97 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 24 N -0.92 -23.42 10.72 55.49 0.59 -22.82 16 25 Si 0.90 22.09 29.55 -169.99 -5.02 17.06 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 C -0.10 -1.92 9.53 -39.02 -0.37 -2.29 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.71 7.67 -51.93 -0.40 0.32 16 36 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 37 H 0.12 1.64 6.28 -52.49 -0.33 1.31 16 38 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 39 H 0.14 2.65 5.84 -52.49 -0.31 2.34 16 40 H 0.40 7.30 4.54 -40.82 -0.19 7.12 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.38 8.34 5.70 -40.82 -0.23 8.11 16 50 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 51 H 0.13 2.66 7.65 -52.49 -0.40 2.26 16 LS Contribution 408.33 15.07 6.15 6.15 Total: -1.00 -28.83 408.33 -9.39 -38.22 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -8.53 Total: 15.36 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.06 Total: -6.78 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.18 Total: -51.61 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.11 Total: -18.40 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -28.83 -9.39 -38.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134520224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.935 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds