Wall clock time and date at job start Tue Mar 31 2020 19:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35912 * 117.00151 * 180.02562 * 4 3 2 6 6 C 1.38854 * 119.98232 * 359.72082 * 5 4 3 7 7 C 1.38240 * 120.23508 * 179.72541 * 6 5 4 8 8 C 1.38008 * 120.20927 * 0.55538 * 7 6 5 9 9 C 1.39564 * 119.96259 * 359.72015 * 8 7 6 10 10 C 1.47858 * 120.11688 * 179.97438 * 9 8 7 11 11 O 1.21548 * 120.00150 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00270 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00186 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47454 * 325.00429 * 13 12 10 15 15 C 1.53006 * 109.46733 * 85.00534 * 13 12 10 16 16 C 1.53006 * 109.47181 * 205.00095 * 13 12 10 17 17 C 1.53002 * 109.46658 * 65.00402 * 16 13 12 18 18 H 1.09001 * 109.46906 * 55.00149 * 17 16 13 19 19 C 1.53006 * 109.46681 * 174.99712 * 17 16 13 20 20 N 1.46500 * 109.47114 * 294.99918 * 17 16 13 21 21 C 1.36938 * 119.99556 * 155.00654 * 20 17 16 22 22 H 1.07990 * 120.00240 * 359.97438 * 21 20 17 23 23 C 1.38815 * 119.99400 * 180.02562 * 21 20 17 24 24 N 1.31617 * 120.00268 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99648 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46854 * 59.99652 * 25 23 21 27 27 H 1.48502 * 109.46848 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47036 * 299.99562 * 25 23 21 29 29 C 1.38454 * 119.98389 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 33 33 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 34 34 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 36 36 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 37 37 H 1.07999 * 119.87774 * 359.97438 * 6 5 4 38 38 H 1.07997 * 119.90034 * 180.27565 * 7 6 5 39 39 H 1.07999 * 120.02064 * 179.70705 * 8 7 6 40 40 H 0.97000 * 119.99268 * 0.02562 * 12 10 9 41 41 H 1.09002 * 109.47107 * 179.97438 * 15 13 12 42 42 H 1.08997 * 109.47342 * 299.99785 * 15 13 12 43 43 H 1.08998 * 109.47236 * 59.99762 * 15 13 12 44 44 H 1.08997 * 109.46877 * 185.00433 * 16 13 12 45 45 H 1.08995 * 109.46940 * 305.00396 * 16 13 12 46 46 H 1.09001 * 109.46764 * 179.97438 * 19 17 16 47 47 H 1.08997 * 109.46976 * 300.00062 * 19 17 16 48 48 H 1.09000 * 109.46771 * 60.00115 * 19 17 16 49 49 H 0.97001 * 120.00096 * 334.99988 * 20 17 16 50 50 H 0.96999 * 120.00146 * 180.02562 * 24 23 21 51 51 H 1.07998 * 120.10414 * 359.97179 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0861 2.6534 -0.0001 6 6 3.3295 3.8177 -0.0050 7 6 3.9517 5.0521 0.0012 8 6 5.3293 5.1354 0.0006 9 6 6.0980 3.9706 -0.0002 10 6 7.5742 4.0559 -0.0014 11 8 8.2416 3.0401 -0.0026 12 7 8.1797 5.2600 -0.0011 13 6 9.6422 5.3445 -0.0017 14 1 10.0537 4.5247 0.5871 15 6 10.1579 5.2492 -1.4390 16 6 10.0762 6.6788 0.6085 17 6 9.6689 6.7219 2.0826 18 1 10.0796 5.8539 2.5986 19 6 10.2114 8.0005 2.7244 20 7 8.2077 6.7054 2.1862 21 6 7.6072 6.2333 3.3228 22 1 8.2108 5.8728 4.1425 23 6 6.2226 6.2172 3.4207 24 7 5.4870 6.6561 2.4214 25 14 5.4034 5.5726 4.9708 26 1 5.8360 6.3872 6.1346 27 1 3.9283 5.6626 4.8251 28 1 5.7946 4.1562 5.1851 29 6 5.4687 2.7253 -0.0012 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 2.2512 3.7586 -0.0095 38 1 3.3580 5.9543 0.0019 39 1 5.8122 6.1014 0.0007 40 1 7.6470 6.0706 0.0003 41 1 11.2461 5.3125 -1.4396 42 1 9.8487 4.2986 -1.8737 43 1 9.7463 6.0689 -2.0278 44 1 11.1584 6.7804 0.5273 45 1 9.5934 7.4968 0.0740 46 1 9.9209 8.0315 3.7745 47 1 11.2986 8.0127 2.6472 48 1 9.8008 8.8684 2.2084 49 1 7.6656 7.0290 1.4498 50 1 4.5195 6.6452 2.4900 51 1 6.0583 1.8205 -0.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134520224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:55 Heat of formation + Delta-G solvation = -61.979645 kcal Electronic energy + Delta-G solvation = -30146.263124 eV Core-core repulsion = 26238.380757 eV Total energy + Delta-G solvation = -3907.882368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.38183 -40.50096 -38.52044 -37.92067 -35.75770 -34.84519 -34.01517 -32.59912 -31.67165 -30.68403 -29.95204 -27.58634 -27.46670 -25.51206 -25.05409 -23.29136 -22.74901 -21.91124 -21.67953 -21.01530 -19.41598 -19.05962 -17.58895 -17.29558 -17.23128 -16.87448 -16.67773 -16.35650 -15.90803 -15.56983 -15.41904 -15.05597 -14.92727 -14.75198 -14.50224 -14.30577 -14.17613 -13.57342 -13.55306 -13.34317 -13.28838 -13.14871 -13.00851 -12.88801 -12.77364 -12.60970 -12.58933 -12.29009 -12.21996 -12.16560 -12.15058 -11.73361 -11.68954 -11.55780 -11.50599 -11.38577 -10.84994 -10.80930 -10.02314 -9.73070 -9.12047 -8.70631 -7.78981 -4.98140 -0.02314 0.60683 1.44285 1.47572 1.50844 1.99583 2.12544 2.54539 2.63201 3.04942 3.54883 3.75395 3.86681 3.89838 3.93693 4.01601 4.07722 4.19207 4.20137 4.29221 4.34477 4.38742 4.46761 4.54289 4.58722 4.59327 4.69454 4.72425 4.81770 4.85753 4.89708 4.93846 5.01432 5.09645 5.10106 5.16138 5.16580 5.18548 5.31657 5.34855 5.38558 5.44513 5.50616 5.63466 5.65064 5.67024 5.77112 5.84041 6.44879 6.48981 6.72831 7.39664 7.53717 8.22508 8.51680 9.41067 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.003947 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.730367 B = 7092.434783 C = 8706.058607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.049 3.951 4 O -0.335 6.335 5 C 0.099 3.901 6 C -0.180 4.180 7 C -0.085 4.085 8 C -0.054 4.054 9 C -0.117 4.117 10 C 0.563 3.437 11 O -0.597 6.597 12 N -0.682 5.682 13 C 0.144 3.856 14 H 0.054 0.946 15 C -0.152 4.152 16 C -0.119 4.119 17 C 0.160 3.840 18 H 0.025 0.975 19 C -0.152 4.152 20 N -0.717 5.717 21 C -0.234 4.234 22 H 0.048 0.952 23 C -0.037 4.037 24 N -0.920 5.920 25 Si 0.930 3.070 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.306 1.306 29 C -0.122 4.122 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.406 0.594 41 H 0.087 0.913 42 H 0.036 0.964 43 H 0.070 0.930 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.027 0.973 47 H 0.067 0.933 48 H 0.050 0.950 49 H 0.375 0.625 50 H 0.252 0.748 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 -2.221 -10.249 11.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.025 4.025 4 O -0.250 6.250 5 C 0.054 3.946 6 C -0.199 4.199 7 C -0.103 4.103 8 C -0.074 4.074 9 C -0.121 4.121 10 C 0.351 3.649 11 O -0.480 6.480 12 N -0.333 5.333 13 C 0.039 3.961 14 H 0.072 0.928 15 C -0.210 4.210 16 C -0.157 4.157 17 C 0.052 3.948 18 H 0.043 0.957 19 C -0.212 4.212 20 N -0.360 5.360 21 C -0.367 4.367 22 H 0.066 0.934 23 C -0.232 4.232 24 N -0.569 5.569 25 Si 0.763 3.237 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.235 1.235 29 C -0.142 4.142 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.152 0.848 40 H 0.245 0.755 41 H 0.106 0.894 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.128 0.872 45 H 0.098 0.902 46 H 0.046 0.954 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.210 0.790 50 H 0.061 0.939 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.589 -3.131 -10.082 11.150 hybrid contribution -1.025 -0.052 1.423 1.755 sum -4.614 -3.183 -8.659 10.315 Atomic orbital electron populations 1.21672 0.92424 1.03299 1.02757 1.21508 0.97430 0.93685 1.03303 1.23149 0.77011 1.00163 1.02192 1.86015 1.23016 1.26708 1.89266 1.18706 0.91395 0.85060 0.99398 1.21610 1.00985 0.91671 1.05644 1.21053 0.94339 0.97614 0.97311 1.21223 0.94348 0.96938 0.94842 1.19699 0.92872 0.94076 1.05422 1.18321 0.87706 0.83714 0.75157 1.90635 1.67079 1.36522 1.53792 1.45905 1.07755 1.07547 1.72126 1.21000 0.79344 0.98556 0.97167 0.92752 1.22110 1.02366 1.01581 0.94928 1.22130 1.03136 0.95549 0.94877 1.20494 0.84331 0.95421 0.94548 0.95664 1.22256 1.00156 0.98917 0.99870 1.42421 1.00782 1.75598 1.17207 1.19138 0.89797 1.32993 0.94752 0.93364 1.24797 0.96466 1.03139 0.98805 1.69537 1.04147 1.52837 1.30382 0.85907 0.77927 0.77326 0.82506 1.21668 1.21751 1.23471 1.20312 0.92198 0.97490 1.04198 0.90739 0.92162 0.91475 0.90864 0.91710 0.91875 0.90549 0.82897 0.83622 0.84807 0.75523 0.89396 0.94432 0.91065 0.87229 0.90230 0.95369 0.91372 0.93127 0.78980 0.93855 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.12 -2.25 6.30 30.59 0.19 -2.05 16 3 C 0.05 1.13 4.74 71.98 0.34 1.47 16 4 O -0.34 -10.88 10.13 -92.56 -0.94 -11.81 16 5 C 0.10 3.55 6.68 22.47 0.15 3.70 16 6 C -0.18 -5.65 9.03 22.42 0.20 -5.45 16 7 C -0.09 -2.84 10.03 22.22 0.22 -2.61 16 8 C -0.05 -2.05 7.84 22.54 0.18 -1.87 16 9 C -0.12 -4.91 5.87 -20.10 -0.12 -5.03 16 10 C 0.56 24.52 7.74 86.79 0.67 25.19 16 11 O -0.60 -29.28 16.01 -3.87 -0.06 -29.34 16 12 N -0.68 -25.26 3.75 -445.39 -1.67 -26.93 16 13 C 0.14 4.59 2.57 45.00 0.12 4.70 16 14 H 0.05 2.07 7.58 -2.39 -0.02 2.05 16 15 C -0.15 -3.87 9.48 71.98 0.68 -3.19 16 16 C -0.12 -3.24 4.43 30.60 0.14 -3.10 16 17 C 0.16 5.76 2.89 44.99 0.13 5.89 16 18 H 0.03 1.02 8.08 -2.39 -0.02 1.00 16 19 C -0.15 -4.86 9.49 71.98 0.68 -4.17 16 20 N -0.72 -31.50 3.84 -322.93 -1.24 -32.74 16 21 C -0.23 -12.21 9.93 84.03 0.83 -11.38 16 22 H 0.05 2.63 7.83 -2.92 -0.02 2.61 16 23 C -0.04 -1.92 5.50 84.86 0.47 -1.45 16 24 N -0.92 -46.17 10.72 21.65 0.23 -45.94 16 25 Si 0.93 45.57 29.55 68.60 2.03 47.60 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 29 C -0.12 -5.04 9.53 22.63 0.22 -4.83 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.39 7.67 -2.39 -0.02 1.37 16 36 H 0.08 1.47 7.65 -2.39 -0.02 1.45 16 37 H 0.15 3.69 6.28 -2.91 -0.02 3.67 16 38 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 39 H 0.13 5.12 5.84 -2.91 -0.02 5.11 16 40 H 0.41 14.64 4.54 -92.71 -0.42 14.22 16 41 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.38 16.48 5.70 -92.71 -0.53 15.95 16 50 H 0.25 12.58 8.31 -92.71 -0.77 11.81 16 51 H 0.12 5.03 7.65 -2.91 -0.02 5.00 16 Total: -1.00 -64.39 408.33 4.13 -60.25 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -0.03 Total: 44.26 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 5.82 Total: -5.35 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -2.68 Total: -105.62 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -1.00 Total: -41.15 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -64.39 4.13 -60.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134520224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.729 kcal (2) G-P(sol) polarization free energy of solvation -64.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds