Wall clock time and date at job start Tue Mar 31 2020 19:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35912 * 117.00151 * 180.02562 * 4 3 2 6 6 C 1.38854 * 119.98232 * 359.72082 * 5 4 3 7 7 C 1.38240 * 120.23508 * 179.72541 * 6 5 4 8 8 C 1.38008 * 120.20927 * 0.55538 * 7 6 5 9 9 C 1.39564 * 119.96259 * 359.72015 * 8 7 6 10 10 C 1.47858 * 120.11688 * 179.97438 * 9 8 7 11 11 O 1.21548 * 120.00150 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00270 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00186 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46887 * 35.00530 * 13 12 10 15 15 C 1.52995 * 109.47582 * 275.00484 * 13 12 10 16 16 C 1.53004 * 109.46701 * 155.00106 * 13 12 10 17 17 C 1.52997 * 109.47532 * 295.00041 * 16 13 12 18 18 H 1.09001 * 109.46701 * 55.00614 * 17 16 13 19 19 C 1.53002 * 109.47153 * 174.99923 * 17 16 13 20 20 N 1.46495 * 109.47284 * 295.00241 * 17 16 13 21 21 C 1.36937 * 120.00075 * 154.99709 * 20 17 16 22 22 H 1.07999 * 120.00040 * 0.02562 * 21 20 17 23 23 C 1.38810 * 120.00289 * 179.97438 * 21 20 17 24 24 N 1.31626 * 119.99903 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00386 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46911 * 89.99846 * 25 23 21 27 27 H 1.48496 * 109.47424 * 210.00416 * 25 23 21 28 28 H 1.48504 * 109.46854 * 330.00604 * 25 23 21 29 29 C 1.38454 * 119.98389 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 33 33 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 34 34 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 36 36 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 37 37 H 1.07999 * 119.87774 * 359.97438 * 6 5 4 38 38 H 1.07997 * 119.90034 * 180.27565 * 7 6 5 39 39 H 1.07999 * 120.02064 * 179.70705 * 8 7 6 40 40 H 0.97000 * 119.99268 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.47047 * 299.99948 * 15 13 12 42 42 H 1.08999 * 109.47570 * 59.99844 * 15 13 12 43 43 H 1.09002 * 109.47176 * 180.02562 * 15 13 12 44 44 H 1.09003 * 109.46824 * 55.00810 * 16 13 12 45 45 H 1.09010 * 109.46867 * 175.00253 * 16 13 12 46 46 H 1.09000 * 109.46806 * 60.00177 * 19 17 16 47 47 H 1.08997 * 109.46712 * 180.02562 * 19 17 16 48 48 H 1.08997 * 109.47110 * 300.00117 * 19 17 16 49 49 H 0.97000 * 120.00257 * 334.99560 * 20 17 16 50 50 H 0.96998 * 119.99963 * 179.97438 * 24 23 21 51 51 H 1.07999 * 120.10413 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0861 2.6534 -0.0001 6 6 3.3295 3.8177 -0.0050 7 6 3.9517 5.0521 0.0012 8 6 5.3293 5.1354 0.0006 9 6 6.0980 3.9706 -0.0002 10 6 7.5742 4.0559 -0.0014 11 8 8.2416 3.0401 -0.0026 12 7 8.1797 5.2600 -0.0011 13 6 9.6422 5.3445 -0.0017 14 1 10.0532 4.5253 -0.5918 15 6 10.1593 5.2475 1.4350 16 6 10.0756 6.6794 -0.6108 17 6 9.6670 6.7242 -2.0845 18 1 8.5972 6.5341 -2.1708 19 6 9.9877 8.1047 -2.6610 20 7 10.4064 5.7009 -2.8277 21 6 9.8901 5.1909 -3.9889 22 1 8.9380 5.5435 -4.3572 23 6 10.5909 4.2217 -4.6934 24 7 11.7515 3.7923 -4.2448 25 14 9.8863 3.5255 -6.2771 26 1 10.3509 4.3426 -7.4268 27 1 10.3447 2.1236 -6.4488 28 1 8.4029 3.5572 -6.2149 29 6 5.4687 2.7253 -0.0012 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 2.2512 3.7586 -0.0095 38 1 3.3580 5.9543 0.0019 39 1 5.8122 6.1014 0.0007 40 1 7.6470 6.0706 0.0003 41 1 9.7483 6.0667 2.0251 42 1 9.8505 4.2966 1.8690 43 1 11.2475 5.3109 1.4345 44 1 9.5933 7.4969 -0.0749 45 1 11.1580 6.7810 -0.5307 46 1 11.0575 8.2948 -2.5746 47 1 9.6962 8.1367 -3.7108 48 1 9.4376 8.8661 -2.1081 49 1 11.2617 5.3845 -2.4971 50 1 12.2410 3.1148 -4.7369 51 1 6.0583 1.8205 -0.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134520227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:04 Heat of formation + Delta-G solvation = -55.478219 kcal Electronic energy + Delta-G solvation = -28849.504836 eV Core-core repulsion = 24941.904392 eV Total energy + Delta-G solvation = -3907.600445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.50269 -39.44200 -37.51761 -36.62578 -34.45140 -34.25417 -32.20569 -31.47607 -30.75887 -29.54234 -28.53703 -26.91753 -26.28681 -24.20183 -23.52767 -22.53125 -22.00418 -20.99079 -20.21035 -19.67329 -18.62413 -17.15914 -16.64364 -16.57755 -16.30304 -15.96716 -15.49289 -14.83378 -14.65635 -14.39991 -14.16960 -13.98986 -13.81405 -13.70415 -13.56728 -13.03198 -12.88158 -12.70898 -12.54631 -12.53409 -12.11324 -11.98462 -11.96080 -11.69682 -11.61613 -11.60177 -11.55958 -11.03335 -10.99520 -10.91701 -10.78245 -10.56069 -10.37934 -10.17550 -9.84802 -9.60179 -9.55565 -9.12200 -8.82029 -8.65576 -8.38398 -6.86125 -5.67078 -2.94843 0.80323 1.29191 2.85700 3.04182 3.49548 3.50599 3.55275 3.56992 3.91349 4.45238 4.49090 4.62632 4.67855 4.69372 4.80684 4.87258 5.00880 5.01497 5.04698 5.16565 5.23233 5.33155 5.40115 5.47332 5.53277 5.56039 5.66549 5.67363 5.73621 5.78132 5.82577 5.93176 5.98797 6.05289 6.09571 6.17542 6.20343 6.26730 6.33067 6.40214 6.45370 6.52017 6.61458 6.76187 6.85801 6.97350 7.11538 7.23024 7.78248 7.83158 8.51326 8.56508 9.62713 10.19944 10.54077 11.55712 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010038 B = 0.002993 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.816002 B = 9353.016297 C =10898.549675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.058 3.942 4 O -0.313 6.313 5 C 0.122 3.878 6 C -0.191 4.191 7 C -0.088 4.088 8 C -0.124 4.124 9 C -0.084 4.084 10 C 0.557 3.443 11 O -0.525 6.525 12 N -0.709 5.709 13 C 0.143 3.857 14 H 0.107 0.893 15 C -0.161 4.161 16 C -0.131 4.131 17 C 0.171 3.829 18 H 0.046 0.954 19 C -0.165 4.165 20 N -0.720 5.720 21 C -0.233 4.233 22 H 0.066 0.934 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.902 3.098 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 C -0.093 4.093 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.393 0.607 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.046 0.954 47 H 0.052 0.948 48 H 0.033 0.967 49 H 0.383 0.617 50 H 0.254 0.746 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.305 2.624 14.032 24.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.017 4.017 4 O -0.227 6.227 5 C 0.077 3.923 6 C -0.210 4.210 7 C -0.106 4.106 8 C -0.143 4.143 9 C -0.087 4.087 10 C 0.343 3.657 11 O -0.401 6.401 12 N -0.360 5.360 13 C 0.039 3.961 14 H 0.125 0.875 15 C -0.219 4.219 16 C -0.169 4.169 17 C 0.061 3.939 18 H 0.064 0.936 19 C -0.225 4.225 20 N -0.361 5.361 21 C -0.364 4.364 22 H 0.084 0.916 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.734 3.266 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.209 1.209 29 C -0.113 4.113 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.228 0.772 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.052 0.948 49 H 0.217 0.783 50 H 0.064 0.936 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.814 1.630 13.883 24.248 hybrid contribution -0.541 0.163 -0.957 1.111 sum -20.354 1.793 12.926 24.178 Atomic orbital electron populations 1.21688 0.94258 1.02568 1.02156 1.21492 0.95970 0.94847 1.03965 1.22884 0.78526 0.98933 1.01362 1.86089 1.21185 1.26745 1.88710 1.18807 0.91935 0.84274 0.97288 1.21369 1.00054 0.92411 1.07169 1.20838 0.94301 0.97094 0.98354 1.21216 0.93960 0.97598 1.01560 1.19835 0.93516 0.93310 1.02064 1.18068 0.86812 0.84013 0.76807 1.90803 1.65750 1.34857 1.48720 1.45863 1.07955 1.07463 1.74765 1.21064 0.78640 1.00410 0.95938 0.87499 1.22185 1.01309 1.01611 0.96818 1.22174 1.02003 0.95334 0.97431 1.20227 0.95898 0.89023 0.88783 0.93646 1.22458 1.00594 0.98295 1.01186 1.42386 1.23318 1.44483 1.25956 1.19145 1.02359 1.16120 0.98796 0.91554 1.24691 0.97103 0.99819 0.99212 1.69647 1.14608 1.33502 1.40238 0.86256 0.78207 0.78343 0.83815 1.21913 1.21803 1.20888 1.20507 0.91230 0.98553 1.00978 0.92346 0.91695 0.92410 0.90633 0.90735 0.92052 0.91971 0.85347 0.85231 0.85385 0.77196 0.93148 0.92470 0.91667 0.92073 0.90535 0.93527 0.92928 0.94756 0.78334 0.93627 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.15 0.37 -0.39 16 2 C -0.13 -0.88 6.30 -26.74 -0.17 -1.05 16 3 C 0.06 0.48 4.74 37.16 0.18 0.66 16 4 O -0.31 -3.85 10.13 -19.46 -0.20 -4.05 16 5 C 0.12 1.58 6.68 -39.27 -0.26 1.32 16 6 C -0.19 -1.99 9.03 -39.35 -0.36 -2.35 16 7 C -0.09 -0.87 10.03 -39.66 -0.40 -1.27 16 8 C -0.12 -1.43 9.54 -39.17 -0.37 -1.81 16 9 C -0.08 -1.25 5.87 -104.99 -0.62 -1.87 16 10 C 0.56 9.87 7.74 -12.32 -0.10 9.77 16 11 O -0.52 -11.57 16.01 5.32 0.09 -11.48 16 12 N -0.71 -10.79 4.40 -54.75 -0.24 -11.03 16 13 C 0.14 2.37 2.52 -67.93 -0.17 2.20 16 14 H 0.11 2.32 7.05 -51.93 -0.37 1.96 16 15 C -0.16 -2.25 9.48 37.16 0.35 -1.90 16 16 C -0.13 -2.00 4.29 -26.73 -0.11 -2.12 16 17 C 0.17 3.26 2.84 -67.93 -0.19 3.07 16 18 H 0.05 0.89 7.56 -51.93 -0.39 0.50 16 19 C -0.17 -2.89 9.49 37.16 0.35 -2.54 16 20 N -0.72 -17.86 4.49 -53.43 -0.24 -18.10 16 21 C -0.23 -6.57 9.93 -15.06 -0.15 -6.71 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.89 13.06 55.49 0.72 -28.16 16 25 Si 0.90 23.36 29.55 -169.99 -5.02 18.33 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 28 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 29 C -0.09 -1.41 9.53 -39.02 -0.37 -1.78 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 36 H 0.06 0.46 7.65 -51.93 -0.40 0.07 16 37 H 0.13 0.99 6.28 -52.49 -0.33 0.66 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 1.17 6.40 -52.49 -0.34 0.83 16 40 H 0.39 4.72 6.63 -40.82 -0.27 4.45 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 50 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 51 H 0.14 2.36 7.65 -52.49 -0.40 1.96 16 LS Contribution 417.12 15.07 6.29 6.29 Total: -1.00 -34.57 417.12 -9.40 -43.96 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -8.67 Total: 11.49 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.12 Total: -7.24 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.24 Total: -57.30 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.11 Total: -15.53 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.57 -9.40 -43.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134520227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.513 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds