Wall clock time and date at job start Tue Mar 31 2020 19:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35912 * 117.00151 * 180.02562 * 4 3 2 6 6 C 1.38854 * 119.98232 * 359.72082 * 5 4 3 7 7 C 1.38240 * 120.23508 * 179.72541 * 6 5 4 8 8 C 1.38008 * 120.20927 * 0.55538 * 7 6 5 9 9 C 1.39564 * 119.96259 * 359.72015 * 8 7 6 10 10 C 1.47858 * 120.11688 * 179.97438 * 9 8 7 11 11 O 1.21548 * 120.00150 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00270 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00186 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46887 * 35.00530 * 13 12 10 15 15 C 1.52995 * 109.47582 * 275.00484 * 13 12 10 16 16 C 1.53004 * 109.46701 * 155.00106 * 13 12 10 17 17 C 1.52997 * 109.47532 * 295.00041 * 16 13 12 18 18 H 1.09001 * 109.46701 * 55.00614 * 17 16 13 19 19 C 1.53002 * 109.47153 * 174.99923 * 17 16 13 20 20 N 1.46495 * 109.47284 * 295.00241 * 17 16 13 21 21 C 1.36937 * 120.00075 * 154.99709 * 20 17 16 22 22 H 1.07999 * 120.00040 * 0.02562 * 21 20 17 23 23 C 1.38810 * 120.00289 * 179.97438 * 21 20 17 24 24 N 1.31626 * 119.99903 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00386 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46911 * 89.99846 * 25 23 21 27 27 H 1.48496 * 109.47424 * 210.00416 * 25 23 21 28 28 H 1.48504 * 109.46854 * 330.00604 * 25 23 21 29 29 C 1.38454 * 119.98389 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 33 33 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 34 34 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 36 36 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 37 37 H 1.07999 * 119.87774 * 359.97438 * 6 5 4 38 38 H 1.07997 * 119.90034 * 180.27565 * 7 6 5 39 39 H 1.07999 * 120.02064 * 179.70705 * 8 7 6 40 40 H 0.97000 * 119.99268 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.47047 * 299.99948 * 15 13 12 42 42 H 1.08999 * 109.47570 * 59.99844 * 15 13 12 43 43 H 1.09002 * 109.47176 * 180.02562 * 15 13 12 44 44 H 1.09003 * 109.46824 * 55.00810 * 16 13 12 45 45 H 1.09010 * 109.46867 * 175.00253 * 16 13 12 46 46 H 1.09000 * 109.46806 * 60.00177 * 19 17 16 47 47 H 1.08997 * 109.46712 * 180.02562 * 19 17 16 48 48 H 1.08997 * 109.47110 * 300.00117 * 19 17 16 49 49 H 0.97000 * 120.00257 * 334.99560 * 20 17 16 50 50 H 0.96998 * 119.99963 * 179.97438 * 24 23 21 51 51 H 1.07999 * 120.10413 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0861 2.6534 -0.0001 6 6 3.3295 3.8177 -0.0050 7 6 3.9517 5.0521 0.0012 8 6 5.3293 5.1354 0.0006 9 6 6.0980 3.9706 -0.0002 10 6 7.5742 4.0559 -0.0014 11 8 8.2416 3.0401 -0.0026 12 7 8.1797 5.2600 -0.0011 13 6 9.6422 5.3445 -0.0017 14 1 10.0532 4.5253 -0.5918 15 6 10.1593 5.2475 1.4350 16 6 10.0756 6.6794 -0.6108 17 6 9.6670 6.7242 -2.0845 18 1 8.5972 6.5341 -2.1708 19 6 9.9877 8.1047 -2.6610 20 7 10.4064 5.7009 -2.8277 21 6 9.8901 5.1909 -3.9889 22 1 8.9380 5.5435 -4.3572 23 6 10.5909 4.2217 -4.6934 24 7 11.7515 3.7923 -4.2448 25 14 9.8863 3.5255 -6.2771 26 1 10.3509 4.3426 -7.4268 27 1 10.3447 2.1236 -6.4488 28 1 8.4029 3.5572 -6.2149 29 6 5.4687 2.7253 -0.0012 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 2.2512 3.7586 -0.0095 38 1 3.3580 5.9543 0.0019 39 1 5.8122 6.1014 0.0007 40 1 7.6470 6.0706 0.0003 41 1 9.7483 6.0667 2.0251 42 1 9.8505 4.2966 1.8690 43 1 11.2475 5.3109 1.4345 44 1 9.5933 7.4969 -0.0749 45 1 11.1580 6.7810 -0.5307 46 1 11.0575 8.2948 -2.5746 47 1 9.6962 8.1367 -3.7108 48 1 9.4376 8.8661 -2.1081 49 1 11.2617 5.3845 -2.4971 50 1 12.2410 3.1148 -4.7369 51 1 6.0583 1.8205 -0.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134520227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:03 Heat of formation + Delta-G solvation = -77.912782 kcal Electronic energy + Delta-G solvation = -28850.477672 eV Core-core repulsion = 24941.904392 eV Total energy + Delta-G solvation = -3908.573280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54099 -40.60936 -38.60645 -38.01700 -36.09595 -34.86599 -34.04501 -32.73298 -31.82303 -30.67461 -30.30306 -27.59422 -27.52521 -25.70327 -25.16917 -23.44876 -22.81026 -22.11671 -21.42951 -21.18703 -19.71392 -19.18699 -17.72147 -17.39855 -17.27709 -17.02202 -16.70414 -16.49118 -16.02729 -15.64739 -15.51746 -15.17084 -15.01892 -14.84727 -14.65947 -14.47545 -14.27418 -13.64246 -13.62011 -13.43522 -13.32423 -13.17185 -13.06913 -12.92446 -12.78241 -12.76416 -12.67215 -12.33997 -12.28540 -12.22177 -12.21422 -11.82122 -11.79326 -11.55810 -11.54773 -11.41373 -11.00492 -10.89958 -10.19829 -9.92361 -9.30022 -8.94080 -7.92216 -5.17075 -0.21986 0.37167 1.40641 1.43799 1.50508 1.85622 1.97693 2.37723 2.55752 2.83526 3.42278 3.64345 3.75623 3.83747 3.93463 3.94220 4.02746 4.06162 4.11101 4.17631 4.26168 4.27922 4.41219 4.47026 4.54674 4.55225 4.58695 4.70032 4.78800 4.80375 4.84140 4.86699 4.95577 5.04788 5.11229 5.12297 5.16490 5.18386 5.23970 5.29344 5.32857 5.33567 5.36023 5.43355 5.51299 5.61691 5.65440 5.68671 6.31399 6.39168 6.60106 7.28727 7.36909 8.18123 8.36916 9.31696 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010038 B = 0.002993 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.816002 B = 9353.016297 C =10898.549675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.050 3.950 4 O -0.339 6.339 5 C 0.114 3.886 6 C -0.179 4.179 7 C -0.075 4.075 8 C -0.118 4.118 9 C -0.107 4.107 10 C 0.548 3.452 11 O -0.587 6.587 12 N -0.693 5.693 13 C 0.145 3.855 14 H 0.045 0.955 15 C -0.151 4.151 16 C -0.117 4.117 17 C 0.161 3.839 18 H 0.043 0.957 19 C -0.155 4.155 20 N -0.732 5.732 21 C -0.223 4.223 22 H 0.069 0.931 23 C -0.081 4.081 24 N -0.969 5.969 25 Si 0.960 3.040 26 H -0.283 1.283 27 H -0.301 1.301 28 H -0.275 1.275 29 C -0.128 4.128 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.164 0.836 38 H 0.176 0.824 39 H 0.157 0.843 40 H 0.413 0.587 41 H 0.085 0.915 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.111 0.889 45 H 0.077 0.923 46 H 0.041 0.959 47 H 0.029 0.971 48 H 0.079 0.921 49 H 0.370 0.630 50 H 0.247 0.753 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.883 6.342 15.007 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C -0.024 4.024 4 O -0.253 6.253 5 C 0.068 3.932 6 C -0.197 4.197 7 C -0.093 4.093 8 C -0.137 4.137 9 C -0.110 4.110 10 C 0.336 3.664 11 O -0.468 6.468 12 N -0.345 5.345 13 C 0.040 3.960 14 H 0.063 0.937 15 C -0.209 4.209 16 C -0.155 4.155 17 C 0.054 3.946 18 H 0.061 0.939 19 C -0.215 4.215 20 N -0.372 5.372 21 C -0.355 4.355 22 H 0.087 0.913 23 C -0.273 4.273 24 N -0.621 5.621 25 Si 0.791 3.209 26 H -0.210 1.210 27 H -0.228 1.228 28 H -0.200 1.200 29 C -0.148 4.148 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.181 0.819 38 H 0.193 0.807 39 H 0.174 0.826 40 H 0.251 0.749 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.090 0.910 44 H 0.129 0.871 45 H 0.096 0.904 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.098 0.902 49 H 0.201 0.799 50 H 0.056 0.944 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.452 5.439 14.873 28.298 hybrid contribution 0.443 -0.950 -1.189 1.585 sum -23.009 4.489 13.684 27.145 Atomic orbital electron populations 1.21666 0.92327 1.03196 1.02954 1.21528 0.97518 0.94196 1.03119 1.23203 0.76456 0.99956 1.02816 1.86073 1.23518 1.27020 1.88724 1.18868 0.91190 0.85600 0.97504 1.21801 1.01635 0.91487 1.04800 1.21368 0.93716 0.98446 0.95763 1.21544 0.94832 0.97158 1.00177 1.19690 0.91837 0.94677 1.04815 1.18677 0.88214 0.83773 0.75705 1.90764 1.67337 1.36957 1.51733 1.45712 1.07641 1.07606 1.73543 1.20893 0.79227 0.99095 0.96772 0.93675 1.22085 1.01831 1.01826 0.95187 1.22088 1.02573 0.95898 0.94949 1.20556 0.95065 0.88382 0.90637 0.93891 1.22296 1.00971 0.97979 1.00244 1.42608 1.23216 1.45777 1.25596 1.19496 1.01839 1.14904 0.99275 0.91259 1.25444 0.97930 1.01269 1.02638 1.69802 1.16118 1.34556 1.41634 0.85314 0.77830 0.77065 0.80723 1.20983 1.22825 1.20008 1.20412 0.92648 0.97789 1.03920 0.91728 0.91234 0.91360 0.91843 0.91358 0.90101 0.90705 0.81905 0.80702 0.82555 0.74900 0.89592 0.94671 0.91005 0.87094 0.90399 0.93943 0.95214 0.90223 0.79873 0.94447 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.13 -1.69 6.30 30.59 0.19 -1.50 16 3 C 0.05 0.75 4.74 71.98 0.34 1.09 16 4 O -0.34 -8.46 10.13 -92.56 -0.94 -9.40 16 5 C 0.11 2.92 6.68 22.47 0.15 3.07 16 6 C -0.18 -3.13 9.03 22.42 0.20 -2.93 16 7 C -0.08 -1.14 10.03 22.22 0.22 -0.92 16 8 C -0.12 -2.39 9.54 22.54 0.21 -2.17 16 9 C -0.11 -3.26 5.87 -20.10 -0.12 -3.37 16 10 C 0.55 20.44 7.74 86.79 0.67 21.11 16 11 O -0.59 -28.47 16.01 -3.87 -0.06 -28.53 16 12 N -0.69 -20.74 4.40 -445.41 -1.96 -22.70 16 13 C 0.14 4.79 2.52 44.99 0.11 4.90 16 14 H 0.04 2.09 7.05 -2.39 -0.02 2.08 16 15 C -0.15 -4.13 9.48 71.98 0.68 -3.44 16 16 C -0.12 -3.30 4.29 30.59 0.13 -3.17 16 17 C 0.16 5.92 2.84 44.99 0.13 6.05 16 18 H 0.04 1.60 7.56 -2.39 -0.02 1.58 16 19 C -0.16 -5.00 9.49 71.98 0.68 -4.31 16 20 N -0.73 -37.02 4.49 -322.95 -1.45 -38.47 16 21 C -0.22 -12.79 9.93 84.03 0.83 -11.96 16 22 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 23 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 24 N -0.97 -62.69 13.06 21.65 0.28 -62.41 16 25 Si 0.96 49.34 29.55 68.60 2.03 51.37 16 26 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.30 -15.81 7.11 99.48 0.71 -15.10 16 28 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 29 C -0.13 -4.16 9.53 22.63 0.22 -3.95 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 0.89 7.67 -2.39 -0.02 0.87 16 36 H 0.07 0.93 7.65 -2.39 -0.02 0.91 16 37 H 0.16 1.70 6.28 -2.91 -0.02 1.68 16 38 H 0.18 1.17 8.06 -2.91 -0.02 1.14 16 39 H 0.16 2.13 6.40 -2.91 -0.02 2.12 16 40 H 0.41 8.72 6.63 -92.71 -0.61 8.11 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 46 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.37 20.46 7.80 -92.71 -0.72 19.74 16 50 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 51 H 0.11 4.15 7.65 -2.91 -0.02 4.13 16 Total: -1.00 -83.57 417.12 3.33 -80.24 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.42 Total: 36.33 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 5.85 Total: -6.43 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -3.13 Total: -123.58 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.00 Total: -37.93 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.03 Total: 51.37 kcal Total: -83.57 3.33 -80.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134520227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.331 kcal (2) G-P(sol) polarization free energy of solvation -83.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds