Wall clock time and date at job start Tue Mar 31 2020 19:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 O 1.42902 * 109.47181 * 120.00157 * 2 1 3 5 5 C 1.42899 * 114.00047 * 89.99624 * 4 2 1 6 6 C 1.50707 * 109.46968 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99857 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99906 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99805 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.46780 * 269.99277 * 9 8 6 11 11 N 1.46503 * 109.46780 * 180.02562 * 10 9 8 12 12 C 1.36943 * 119.99874 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00031 * 0.02562 * 12 11 10 14 14 C 1.38816 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99584 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99921 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46925 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.46823 * 120.00378 * 16 14 12 19 19 H 1.48500 * 109.46890 * 240.00195 * 16 14 12 20 20 C 1.46496 * 119.99885 * 359.97438 * 8 6 5 21 21 C 1.52995 * 109.47070 * 90.00634 * 20 8 6 22 22 C 1.50707 * 109.47301 * 179.97438 * 21 20 8 23 23 C 1.38238 * 119.99792 * 90.00016 * 22 21 20 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.97953 * 22 21 20 28 28 H 1.08999 * 109.46900 * 300.00261 * 1 2 3 29 29 H 1.09001 * 109.47087 * 59.99866 * 1 2 3 30 30 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46900 * 239.99739 * 2 1 3 32 32 H 1.09008 * 109.46705 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46631 * 299.99675 * 3 2 1 34 34 H 1.08999 * 109.47077 * 60.00476 * 3 2 1 35 35 H 1.08996 * 109.46993 * 60.00055 * 5 4 2 36 36 H 1.08999 * 109.47248 * 300.00289 * 5 4 2 37 37 H 1.09003 * 109.47109 * 29.99830 * 9 8 6 38 38 H 1.09008 * 109.46723 * 149.99386 * 9 8 6 39 39 H 1.09003 * 109.47751 * 300.00159 * 10 9 8 40 40 H 1.09004 * 109.46964 * 60.00681 * 10 9 8 41 41 H 0.97001 * 120.00420 * 0.02562 * 11 10 9 42 42 H 0.96998 * 119.99830 * 179.97438 * 15 14 12 43 43 H 1.08995 * 109.47623 * 330.00403 * 20 8 6 44 44 H 1.09004 * 109.47046 * 210.00410 * 20 8 6 45 45 H 1.09005 * 109.47610 * 60.00011 * 21 20 8 46 46 H 1.09000 * 109.47256 * 299.99352 * 21 20 8 47 47 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 48 48 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 49 49 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 50 50 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 51 51 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2000 -2.0782 0.9886 6 6 2.7002 -2.6835 2.2750 7 8 2.8742 -1.9811 3.2483 8 7 2.9552 -4.0051 2.3434 9 6 3.4420 -4.5934 3.5938 10 6 4.9714 -4.5575 3.6127 11 7 5.4582 -5.1463 4.8627 12 6 6.8039 -5.2239 5.1045 13 1 7.5062 -4.8507 4.3739 14 6 7.2651 -5.7814 6.2892 15 7 6.4091 -6.2357 7.1798 16 14 9.1007 -5.8866 6.6194 17 1 9.8441 -5.3103 5.4703 18 1 9.4264 -5.1245 7.8515 19 1 9.4906 -7.3082 6.7990 20 6 2.7456 -4.8534 1.1676 21 6 4.0326 -4.9080 0.3422 22 6 3.8172 -5.7812 -0.8671 23 6 3.3579 -5.2265 -2.0471 24 6 3.1608 -6.0274 -3.1565 25 6 3.4236 -7.3827 -3.0861 26 6 3.8778 -7.9382 -1.9046 27 6 4.0794 -7.1366 -0.7966 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.9318 -2.2467 0.1986 36 1 1.2537 -2.5434 0.7124 37 1 3.0546 -4.0236 4.4384 38 1 3.1018 -5.6265 3.6658 39 1 5.3588 -5.1273 2.7680 40 1 5.3115 -3.5244 3.5406 41 1 4.8274 -5.4818 5.5188 42 1 6.7314 -6.6255 8.0074 43 1 1.9413 -4.4394 0.5595 44 1 2.4770 -5.8598 1.4889 45 1 4.8370 -5.3222 0.9502 46 1 4.3012 -3.9017 0.0208 47 1 3.1530 -4.1675 -2.1022 48 1 2.8016 -5.5941 -4.0782 49 1 3.2700 -8.0082 -3.9530 50 1 4.0790 -8.9978 -1.8483 51 1 4.4389 -7.5698 0.1251 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162727022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:03 Heat of formation + Delta-G solvation = -49.883054 kcal Electronic energy + Delta-G solvation = -28851.949559 eV Core-core repulsion = 24944.591739 eV Total energy + Delta-G solvation = -3907.357820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.17936 -39.35104 -38.23456 -36.23411 -34.66718 -33.07930 -32.92918 -31.37616 -31.07726 -29.11512 -28.48181 -27.50349 -26.62836 -24.02716 -23.51190 -22.76270 -21.68373 -21.53712 -20.97345 -19.29684 -17.47857 -17.20686 -16.95051 -16.84278 -16.14197 -15.78882 -15.32271 -15.25868 -14.97456 -14.53476 -14.40740 -13.85614 -13.76551 -13.55423 -13.43844 -13.31910 -13.25015 -13.18148 -12.94445 -12.74813 -12.59367 -12.45141 -12.31270 -12.10036 -11.70184 -11.51258 -11.28030 -11.21316 -11.07889 -10.98402 -10.89903 -10.85046 -10.56553 -10.05748 -9.85995 -9.75793 -9.55028 -9.11606 -9.02261 -8.84479 -8.48349 -6.90135 -5.73782 -3.02750 1.14068 1.20690 2.65760 2.74429 3.45878 3.51468 3.53825 3.56675 3.68309 4.38975 4.56315 4.61212 4.64878 4.72113 4.72916 4.79050 4.83624 4.89292 4.90992 4.96960 5.00142 5.09411 5.25375 5.31153 5.32919 5.35149 5.42291 5.51550 5.52516 5.57757 5.59373 5.66639 5.75042 5.82664 5.87464 5.90509 5.96077 5.97323 6.05648 6.17291 6.26202 6.32764 6.44003 6.57198 6.76655 6.82092 6.90505 6.97055 7.46304 7.73360 8.29706 8.44829 9.55812 10.12073 10.46998 11.49222 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006885 B = 0.003436 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4065.905511 B = 8147.895385 C =11425.076436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.356 6.356 5 C 0.046 3.954 6 C 0.512 3.488 7 O -0.508 6.508 8 N -0.607 5.607 9 C 0.109 3.891 10 C 0.142 3.858 11 N -0.730 5.730 12 C -0.236 4.236 13 H 0.070 0.930 14 C -0.014 4.014 15 N -0.933 5.933 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.292 1.292 20 C 0.116 3.884 21 C -0.109 4.109 22 C -0.076 4.076 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.117 4.117 27 C -0.112 4.112 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.020 0.980 40 H 0.023 0.977 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.692 3.956 -24.884 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.275 6.275 5 C -0.034 4.034 6 C 0.298 3.702 7 O -0.381 6.381 8 N -0.342 5.342 9 C -0.014 4.014 10 C 0.013 3.987 11 N -0.375 5.375 12 C -0.368 4.368 13 H 0.088 0.912 14 C -0.210 4.210 15 N -0.582 5.582 16 Si 0.738 3.262 17 H -0.206 1.206 18 H -0.218 1.218 19 H -0.219 1.219 20 C -0.008 4.008 21 C -0.147 4.147 22 C -0.077 4.077 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.135 4.135 27 C -0.130 4.130 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.038 0.962 40 H 0.041 0.959 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.397 4.485 -24.174 28.000 hybrid contribution 0.805 -0.510 0.034 0.953 sum -12.592 3.975 -24.140 27.516 Atomic orbital electron populations 1.22316 0.95926 1.02353 1.02753 1.22160 0.93713 0.94105 0.87940 1.21853 1.02073 0.94236 1.02547 1.88093 1.86505 1.17833 1.35027 1.22324 1.00827 0.83947 0.96278 1.20184 0.78401 0.82001 0.89635 1.90771 1.50262 1.59661 1.37437 1.47874 1.66351 1.07019 1.12943 1.21754 0.96101 0.98301 0.85198 1.20989 0.90608 0.96686 0.90372 1.42225 1.04986 1.72721 1.17569 1.19245 0.83232 1.32891 1.01386 0.91180 1.24741 0.97694 1.01657 0.96894 1.69670 1.32494 1.46434 1.09570 0.86106 0.85093 0.77182 0.77773 1.20556 1.21814 1.21871 1.21613 0.96498 0.96288 0.86363 1.21233 0.99508 0.99630 0.94328 1.19817 0.98737 0.94212 0.94910 1.21043 1.00167 0.99692 0.92801 1.21115 1.00381 0.94017 0.98372 1.21146 1.00117 0.95286 0.97939 1.21188 0.99277 0.99930 0.93137 1.21200 0.99551 0.93255 0.98984 0.91522 0.91603 0.92545 0.92170 0.91791 0.91252 0.91539 0.90478 0.90666 0.89584 0.90327 0.96219 0.95944 0.78273 0.93554 0.90594 0.89538 0.89033 0.90768 0.86304 0.86279 0.86337 0.86051 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 9.53 37.16 0.35 -0.98 16 2 C 0.08 0.71 3.34 -26.73 -0.09 0.62 16 3 C -0.15 -1.24 9.56 37.16 0.36 -0.88 16 4 O -0.36 -4.70 9.52 -55.14 -0.52 -5.22 16 5 C 0.05 0.52 4.78 36.01 0.17 0.69 16 6 C 0.51 7.97 7.75 -10.98 -0.09 7.88 16 7 O -0.51 -10.58 16.08 -14.36 -0.23 -10.81 16 8 N -0.61 -8.45 2.47 -173.69 -0.43 -8.88 16 9 C 0.11 1.86 5.56 -4.04 -0.02 1.84 16 10 C 0.14 2.99 6.58 -4.04 -0.03 2.96 16 11 N -0.73 -19.11 5.60 -59.91 -0.34 -19.45 16 12 C -0.24 -6.81 9.99 -15.05 -0.15 -6.96 16 13 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 14 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 15 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 16 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 C 0.12 1.16 5.24 -4.05 -0.02 1.14 16 21 C -0.11 -1.11 5.67 -27.88 -0.16 -1.26 16 22 C -0.08 -0.72 5.13 -104.62 -0.54 -1.26 16 23 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 24 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 25 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 26 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 27 C -0.11 -1.10 9.70 -39.58 -0.38 -1.49 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 31 H 0.06 0.43 7.79 -51.93 -0.40 0.02 16 32 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.69 7.13 -51.93 -0.37 0.32 16 36 H 0.08 0.65 7.13 -51.93 -0.37 0.28 16 37 H 0.09 1.67 7.42 -51.93 -0.39 1.28 16 38 H 0.08 1.22 7.89 -51.92 -0.41 0.81 16 39 H 0.02 0.40 6.26 -51.93 -0.33 0.08 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 42 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.08 0.58 6.44 -51.93 -0.33 0.25 16 44 H 0.09 0.82 7.89 -51.93 -0.41 0.41 16 45 H 0.09 1.13 6.20 -51.93 -0.32 0.81 16 46 H 0.07 0.73 7.16 -51.93 -0.37 0.35 16 47 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 48 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 49 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 50 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 51 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 417.94 15.07 6.30 6.30 Total: -1.00 -35.73 417.94 -10.41 -46.14 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -8.62 Total: 5.84 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.27 Total: -3.81 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.04 Total: -56.31 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.76 Total: -16.03 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.73 -10.41 -46.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162727022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.742 kcal (2) G-P(sol) polarization free energy of solvation -35.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds