Wall clock time and date at job start Tue Mar 31 2020 19:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 O 1.42902 * 109.47181 * 120.00157 * 2 1 3 5 5 C 1.42899 * 114.00047 * 89.99624 * 4 2 1 6 6 C 1.50707 * 109.46968 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99857 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99906 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99805 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.46780 * 269.99277 * 9 8 6 11 11 N 1.46503 * 109.46780 * 180.02562 * 10 9 8 12 12 C 1.36943 * 119.99874 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00031 * 0.02562 * 12 11 10 14 14 C 1.38816 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99584 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99921 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46925 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.46823 * 120.00378 * 16 14 12 19 19 H 1.48500 * 109.46890 * 240.00195 * 16 14 12 20 20 C 1.46496 * 119.99885 * 359.97438 * 8 6 5 21 21 C 1.52995 * 109.47070 * 90.00634 * 20 8 6 22 22 C 1.50707 * 109.47301 * 179.97438 * 21 20 8 23 23 C 1.38238 * 119.99792 * 90.00016 * 22 21 20 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.97953 * 22 21 20 28 28 H 1.08999 * 109.46900 * 300.00261 * 1 2 3 29 29 H 1.09001 * 109.47087 * 59.99866 * 1 2 3 30 30 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46900 * 239.99739 * 2 1 3 32 32 H 1.09008 * 109.46705 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46631 * 299.99675 * 3 2 1 34 34 H 1.08999 * 109.47077 * 60.00476 * 3 2 1 35 35 H 1.08996 * 109.46993 * 60.00055 * 5 4 2 36 36 H 1.08999 * 109.47248 * 300.00289 * 5 4 2 37 37 H 1.09003 * 109.47109 * 29.99830 * 9 8 6 38 38 H 1.09008 * 109.46723 * 149.99386 * 9 8 6 39 39 H 1.09003 * 109.47751 * 300.00159 * 10 9 8 40 40 H 1.09004 * 109.46964 * 60.00681 * 10 9 8 41 41 H 0.97001 * 120.00420 * 0.02562 * 11 10 9 42 42 H 0.96998 * 119.99830 * 179.97438 * 15 14 12 43 43 H 1.08995 * 109.47623 * 330.00403 * 20 8 6 44 44 H 1.09004 * 109.47046 * 210.00410 * 20 8 6 45 45 H 1.09005 * 109.47610 * 60.00011 * 21 20 8 46 46 H 1.09000 * 109.47256 * 299.99352 * 21 20 8 47 47 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 48 48 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 49 49 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 50 50 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 51 51 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2000 -2.0782 0.9886 6 6 2.7002 -2.6835 2.2750 7 8 2.8742 -1.9811 3.2483 8 7 2.9552 -4.0051 2.3434 9 6 3.4420 -4.5934 3.5938 10 6 4.9714 -4.5575 3.6127 11 7 5.4582 -5.1463 4.8627 12 6 6.8039 -5.2239 5.1045 13 1 7.5062 -4.8507 4.3739 14 6 7.2651 -5.7814 6.2892 15 7 6.4091 -6.2357 7.1798 16 14 9.1007 -5.8866 6.6194 17 1 9.8441 -5.3103 5.4703 18 1 9.4264 -5.1245 7.8515 19 1 9.4906 -7.3082 6.7990 20 6 2.7456 -4.8534 1.1676 21 6 4.0326 -4.9080 0.3422 22 6 3.8172 -5.7812 -0.8671 23 6 3.3579 -5.2265 -2.0471 24 6 3.1608 -6.0274 -3.1565 25 6 3.4236 -7.3827 -3.0861 26 6 3.8778 -7.9382 -1.9046 27 6 4.0794 -7.1366 -0.7966 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.9318 -2.2467 0.1986 36 1 1.2537 -2.5434 0.7124 37 1 3.0546 -4.0236 4.4384 38 1 3.1018 -5.6265 3.6658 39 1 5.3588 -5.1273 2.7680 40 1 5.3115 -3.5244 3.5406 41 1 4.8274 -5.4818 5.5188 42 1 6.7314 -6.6255 8.0074 43 1 1.9413 -4.4394 0.5595 44 1 2.4770 -5.8598 1.4889 45 1 4.8370 -5.3222 0.9502 46 1 4.3012 -3.9017 0.0208 47 1 3.1530 -4.1675 -2.1022 48 1 2.8016 -5.5941 -4.0782 49 1 3.2700 -8.0082 -3.9530 50 1 4.0790 -8.9978 -1.8483 51 1 4.4389 -7.5698 0.1251 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162727022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:02 Heat of formation + Delta-G solvation = -70.919260 kcal Electronic energy + Delta-G solvation = -28852.861758 eV Core-core repulsion = 24944.591739 eV Total energy + Delta-G solvation = -3908.270018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.28625 -40.05071 -39.10394 -37.55061 -36.43593 -34.17223 -33.68243 -33.17578 -31.69211 -30.55678 -29.32264 -28.25407 -27.87368 -25.52692 -24.78392 -23.38351 -23.26791 -22.23208 -21.79515 -20.48903 -19.22726 -18.41544 -17.93611 -17.58414 -17.08917 -16.99222 -16.52248 -16.05372 -15.97953 -15.82731 -15.59516 -15.13298 -15.10906 -14.95867 -14.59017 -14.35838 -14.17072 -14.05875 -13.94452 -13.57272 -13.50381 -13.23857 -13.04325 -13.02287 -12.92399 -12.83887 -12.62662 -12.52797 -12.36067 -12.11069 -12.08705 -11.94618 -11.80081 -11.65410 -11.61030 -10.98288 -10.84321 -10.60342 -9.98739 -9.74164 -9.44453 -9.07174 -7.99236 -5.29794 0.49566 0.57985 1.44207 1.46589 1.50360 1.56569 1.66544 2.53215 2.81477 2.95928 3.34067 3.47574 3.78711 3.92974 4.03371 4.06578 4.09865 4.13290 4.14085 4.14797 4.21656 4.25105 4.25983 4.31824 4.37840 4.39536 4.49364 4.56052 4.62798 4.72413 4.77517 4.82027 4.87449 4.93591 4.96079 4.98705 5.05343 5.13625 5.24773 5.31041 5.31438 5.35975 5.40209 5.48996 5.65429 5.71269 5.79566 6.14660 6.20178 6.22633 6.38891 7.11863 7.28596 8.00204 8.25621 9.24366 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.006885 B = 0.003436 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4065.905511 B = 8147.895385 C =11425.076436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 C -0.151 4.151 4 O -0.396 6.396 5 C 0.053 3.947 6 C 0.503 3.497 7 O -0.574 6.574 8 N -0.599 5.599 9 C 0.122 3.878 10 C 0.150 3.850 11 N -0.743 5.743 12 C -0.249 4.249 13 H 0.072 0.928 14 C -0.072 4.072 15 N -0.967 5.967 16 Si 0.976 3.024 17 H -0.267 1.267 18 H -0.293 1.293 19 H -0.287 1.287 20 C 0.114 3.886 21 C -0.100 4.100 22 C -0.085 4.085 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.132 4.132 26 C -0.129 4.129 27 C -0.132 4.132 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.036 0.964 40 H -0.004 1.004 41 H 0.375 0.625 42 H 0.253 0.747 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.138 0.862 50 H 0.130 0.870 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.416 3.823 -28.541 32.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 C -0.209 4.209 4 O -0.316 6.316 5 C -0.026 4.026 6 C 0.292 3.708 7 O -0.452 6.452 8 N -0.333 5.333 9 C -0.002 4.002 10 C 0.022 3.978 11 N -0.386 5.386 12 C -0.380 4.380 13 H 0.090 0.910 14 C -0.265 4.265 15 N -0.617 5.617 16 Si 0.804 3.196 17 H -0.192 1.192 18 H -0.220 1.220 19 H -0.213 1.213 20 C -0.008 4.008 21 C -0.139 4.139 22 C -0.085 4.085 23 C -0.138 4.138 24 C -0.141 4.141 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.151 4.151 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.053 0.947 40 H 0.014 0.986 41 H 0.207 0.793 42 H 0.062 0.938 43 H 0.130 0.870 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.160 0.840 48 H 0.162 0.838 49 H 0.156 0.844 50 H 0.148 0.852 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.135 4.339 -27.911 31.585 hybrid contribution 1.002 -0.460 1.070 1.536 sum -13.133 3.879 -26.841 30.132 Atomic orbital electron populations 1.22302 0.94909 1.02875 1.02972 1.22448 0.94561 0.94033 0.87569 1.21905 1.01458 0.94433 1.03057 1.88065 1.87121 1.18794 1.37605 1.22401 1.03024 0.83444 0.93721 1.21169 0.77174 0.81872 0.90585 1.90740 1.53193 1.61220 1.40038 1.47906 1.65167 1.07269 1.12911 1.21386 0.93284 0.99113 0.86397 1.21024 0.93314 0.94673 0.88772 1.42409 1.04263 1.72914 1.19034 1.19602 0.84507 1.32371 1.01555 0.91015 1.25605 1.02314 1.01787 0.96776 1.69821 1.34495 1.47477 1.09945 0.85041 0.79735 0.77162 0.77617 1.19182 1.21988 1.21325 1.21915 0.97596 0.96227 0.85068 1.21083 0.98502 0.99941 0.94358 1.19742 0.99821 0.93806 0.95158 1.21313 0.99363 1.00976 0.92161 1.21463 0.99577 0.93876 0.99185 1.21463 0.99341 0.95997 0.98151 1.21382 0.99544 1.00496 0.93317 1.21267 1.00661 0.93954 0.99179 0.93369 0.89317 0.91866 0.89446 0.92798 0.88514 0.93255 0.87549 0.87161 0.92317 0.88381 0.94670 0.98636 0.79260 0.93782 0.86991 0.88878 0.91902 0.90114 0.83976 0.83833 0.84409 0.85198 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.53 71.98 0.69 -1.50 16 2 C 0.07 1.10 3.34 30.59 0.10 1.20 16 3 C -0.15 -2.30 9.56 71.98 0.69 -1.61 16 4 O -0.40 -9.99 9.52 -129.94 -1.24 -11.23 16 5 C 0.05 1.06 4.78 71.24 0.34 1.40 16 6 C 0.50 15.57 7.75 87.66 0.68 16.25 16 7 O -0.57 -25.01 16.08 16.00 0.26 -24.75 16 8 N -0.60 -16.37 2.47 -821.81 -2.03 -18.40 16 9 C 0.12 4.30 5.56 86.38 0.48 4.78 16 10 C 0.15 6.53 6.58 86.38 0.57 7.09 16 11 N -0.74 -40.17 5.60 -343.44 -1.92 -42.09 16 12 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 13 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 14 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 15 N -0.97 -60.73 13.06 21.65 0.28 -60.44 16 16 Si 0.98 47.53 29.55 68.60 2.03 49.56 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 18 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 19 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 20 C 0.11 2.02 5.24 86.38 0.45 2.47 16 21 C -0.10 -1.88 5.67 29.85 0.17 -1.71 16 22 C -0.08 -1.44 5.13 -19.86 -0.10 -1.54 16 23 C -0.12 -1.58 9.70 22.27 0.22 -1.36 16 24 C -0.12 -1.49 10.05 22.27 0.22 -1.27 16 25 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 26 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 27 C -0.13 -2.50 9.70 22.27 0.22 -2.29 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.70 7.87 -2.39 -0.02 0.68 16 31 H 0.09 0.87 7.79 -2.39 -0.02 0.85 16 32 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 1.49 7.13 -2.39 -0.02 1.48 16 36 H 0.11 1.42 7.13 -2.39 -0.02 1.41 16 37 H 0.06 2.41 7.42 -2.39 -0.02 2.39 16 38 H 0.10 3.06 7.89 -2.38 -0.02 3.04 16 39 H 0.04 1.45 6.26 -2.39 -0.01 1.43 16 40 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.38 21.24 7.67 -92.71 -0.71 20.53 16 42 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.11 1.24 6.44 -2.39 -0.02 1.22 16 44 H 0.09 1.58 7.89 -2.38 -0.02 1.57 16 45 H 0.06 1.54 6.20 -2.38 -0.01 1.53 16 46 H 0.08 1.39 7.16 -2.39 -0.02 1.37 16 47 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 48 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 49 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 50 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 51 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -81.34 417.94 4.04 -77.29 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.19 Total: 29.19 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 6.47 Total: 0.88 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -3.67 Total: -120.94 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.98 Total: -35.98 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -81.34 4.04 -77.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162727022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.376 kcal (2) G-P(sol) polarization free energy of solvation -81.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds