Wall clock time and date at job start Tue Mar 31 2020 19:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46637 * 177.83854 * 3 2 1 5 5 C 1.42899 * 113.99988 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47741 * 179.97438 * 5 4 3 7 7 C 1.50690 * 109.47660 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99844 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00270 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.62996 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.77739 * 233.58703 * 10 9 7 12 12 C 1.53038 * 109.31274 * 305.37174 * 11 10 9 13 13 C 1.52999 * 109.45938 * 181.38766 * 12 11 10 14 14 H 1.08992 * 110.00116 * 51.95422 * 13 12 11 15 15 C 1.54320 * 109.77416 * 173.11632 * 13 12 11 16 16 C 1.55151 * 102.86704 * 141.88363 * 15 13 12 17 17 C 1.54910 * 101.57864 * 324.29972 * 16 15 13 18 18 N 1.47023 * 109.87977 * 290.85713 * 13 12 11 19 19 C 1.36934 * 125.64821 * 61.68045 * 18 13 12 20 20 H 1.08004 * 120.00193 * 301.13377 * 19 18 13 21 21 C 1.38812 * 120.00197 * 121.40494 * 19 18 13 22 22 N 1.31624 * 119.99923 * 175.60427 * 21 19 18 23 23 Si 1.86799 * 119.99755 * 355.60124 * 21 19 18 24 24 H 1.48501 * 109.47175 * 84.84131 * 23 21 19 25 25 H 1.48507 * 109.46948 * 204.83695 * 23 21 19 26 26 H 1.48500 * 109.47238 * 324.83498 * 23 21 19 27 27 C 1.53031 * 109.54115 * 61.35920 * 12 11 10 28 28 C 1.46922 * 120.63085 * 359.97438 * 9 7 6 29 29 H 4.38443 * 5.44487 * 180.02562 * 4 1 2 30 30 H 1.08997 * 109.46783 * 57.83631 * 3 2 1 31 31 H 1.08999 * 109.47278 * 297.83565 * 3 2 1 32 32 H 1.09002 * 109.47101 * 59.99467 * 5 4 3 33 33 H 1.08999 * 109.46918 * 300.00154 * 5 4 3 34 34 H 1.09002 * 109.46969 * 59.99740 * 6 5 4 35 35 H 1.08999 * 109.47330 * 300.00256 * 6 5 4 36 36 H 1.09002 * 109.58456 * 113.80061 * 10 9 7 37 37 H 1.08995 * 109.59021 * 353.37762 * 10 9 7 38 38 H 1.09002 * 109.49728 * 185.41595 * 11 10 9 39 39 H 1.09003 * 109.49616 * 65.32076 * 11 10 9 40 40 H 1.09008 * 109.45616 * 301.35435 * 12 11 10 41 41 H 1.08994 * 110.92519 * 23.46233 * 15 13 12 42 42 H 1.09007 * 110.58553 * 260.14232 * 15 13 12 43 43 H 1.09003 * 111.00550 * 206.22938 * 16 15 13 44 44 H 1.09001 * 111.04091 * 82.38534 * 16 15 13 45 45 H 1.09003 * 110.36797 * 278.17224 * 17 16 15 46 46 H 1.09001 * 110.46403 * 155.90059 * 17 16 15 47 47 H 0.97008 * 119.99449 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.49919 * 58.58922 * 27 12 11 49 49 H 1.09006 * 109.50319 * 178.68262 * 27 12 11 50 50 H 1.08997 * 109.58902 * 246.19689 * 28 9 7 51 51 H 1.08997 * 109.58630 * 6.48150 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1217 1.3472 -0.0508 5 6 4.5461 1.4607 -0.0557 6 6 4.9400 2.9380 -0.1120 7 6 6.4422 3.0577 -0.1165 8 8 7.1301 2.0595 -0.0788 9 7 7.0212 4.2739 -0.1623 10 6 8.4844 4.4066 -0.1667 11 6 8.8972 5.3522 0.9657 12 6 8.1454 6.6770 0.8182 13 6 8.5809 7.6364 1.9276 14 1 9.6680 7.7118 1.9497 15 6 7.9604 9.0287 1.6871 16 6 7.6075 9.5022 3.1218 17 6 7.1800 8.1725 3.7917 18 7 8.0864 7.1565 3.2263 19 6 8.4175 5.9657 3.8158 20 1 8.2137 5.0357 3.3060 21 6 9.0098 5.9537 5.0712 22 7 9.2490 4.8089 5.6751 23 14 9.4676 7.5623 5.9032 24 1 8.2847 8.1032 6.6197 25 1 10.5667 7.3227 6.8728 26 1 9.9156 8.5396 4.8788 27 6 6.6396 6.4254 0.9237 28 6 6.2012 5.4921 -0.2088 29 1 -1.0502 -0.0004 0.0002 30 1 3.0096 -0.5462 -0.8699 31 1 3.0096 -0.4790 0.9087 32 1 4.9488 0.9442 -0.9270 33 1 4.9495 1.0111 0.8517 34 1 4.5373 3.4549 0.7591 35 1 4.5367 3.3872 -1.0195 36 1 8.8113 4.8164 -1.1224 37 1 8.9405 3.4290 -0.0110 38 1 9.9705 5.5351 0.9138 39 1 8.6509 4.8990 1.9260 40 1 8.3727 7.1173 -0.1527 41 1 7.0625 8.9540 1.0738 42 1 8.6877 9.6984 1.2279 43 1 6.7827 10.2147 3.1064 44 1 8.4792 9.9275 3.6191 45 1 6.1450 7.9379 3.5430 46 1 7.3052 8.2329 4.8728 47 1 9.6626 4.8006 6.5525 48 1 6.4145 5.9622 1.8843 49 1 6.1059 7.3724 0.8420 50 1 6.3416 5.9907 -1.1679 51 1 5.1506 5.2304 -0.0834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230569551.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:26 Heat of formation + Delta-G solvation = -2.377574 kcal Electronic energy + Delta-G solvation = -29879.634821 eV Core-core repulsion = 25974.336993 eV Total energy + Delta-G solvation = -3905.297828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.13405 -38.68645 -38.06960 -36.32136 -33.69788 -32.81359 -32.64487 -31.64680 -30.47456 -29.88816 -28.07510 -27.12204 -24.82068 -24.25599 -23.25772 -22.66692 -20.83211 -20.24482 -19.25089 -18.72908 -18.29682 -17.44182 -16.95991 -16.54618 -16.14374 -15.82949 -15.50274 -15.18727 -14.99097 -14.63309 -13.94159 -13.88032 -13.64931 -13.28551 -13.15109 -12.90357 -12.78891 -12.76426 -12.48310 -12.35637 -11.87519 -11.73659 -11.52433 -11.49027 -11.29394 -11.11187 -10.96860 -10.82254 -10.74920 -10.65220 -10.57062 -10.45623 -10.19235 -9.92136 -9.80747 -9.74040 -9.65136 -9.52195 -9.26569 -8.51601 -8.32905 -6.38484 -5.93759 -3.74850 2.22925 2.55164 2.79830 3.13976 3.31156 3.42357 3.49486 3.74536 4.29385 4.49280 4.68037 4.94498 4.96688 5.02810 5.05569 5.11042 5.15212 5.16675 5.34257 5.36280 5.43224 5.49126 5.53965 5.61138 5.63131 5.64713 5.70113 5.73036 5.76629 5.87634 5.92260 6.03223 6.16887 6.18005 6.22463 6.36127 6.38552 6.40155 6.60611 6.65568 6.79239 6.86885 6.87943 6.92034 6.93192 7.06109 7.26578 7.30539 7.62361 8.12085 8.34692 8.53702 8.87306 9.61702 10.34927 11.10915 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012742 B = 0.002885 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.985175 B = 9704.607404 C =10157.054194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.189 4.189 3 C 0.173 3.827 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.138 4.138 7 C 0.520 3.480 8 O -0.549 6.549 9 N -0.601 5.601 10 C 0.113 3.887 11 C -0.145 4.145 12 C -0.083 4.083 13 C 0.158 3.842 14 H 0.039 0.961 15 C -0.128 4.128 16 C -0.139 4.139 17 C 0.116 3.884 18 N -0.597 5.597 19 C -0.256 4.256 20 H 0.084 0.916 21 C 0.048 3.952 22 N -0.901 5.901 23 Si 0.896 3.104 24 H -0.284 1.284 25 H -0.304 1.304 26 H -0.266 1.266 27 C -0.121 4.121 28 C 0.105 3.895 29 H 0.221 0.779 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.026 0.974 46 H 0.040 0.960 47 H 0.265 0.735 48 H 0.087 0.913 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.707 -0.057 -13.824 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.189 4.189 3 C 0.097 3.903 4 O -0.306 6.306 5 C 0.002 3.998 6 C -0.178 4.178 7 C 0.308 3.692 8 O -0.428 6.428 9 N -0.334 5.334 10 C -0.008 4.008 11 C -0.182 4.182 12 C -0.104 4.104 13 C 0.052 3.948 14 H 0.057 0.943 15 C -0.166 4.166 16 C -0.177 4.177 17 C -0.008 4.008 18 N -0.324 5.324 19 C -0.385 4.385 20 H 0.101 0.899 21 C -0.155 4.155 22 N -0.540 5.540 23 Si 0.726 3.274 24 H -0.212 1.212 25 H -0.232 1.232 26 H -0.191 1.191 27 C -0.159 4.159 28 C -0.017 4.017 29 H 0.238 0.762 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.105 0.895 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.338 -0.599 -13.610 17.102 hybrid contribution 0.253 0.831 0.663 1.093 sum -10.085 0.232 -12.947 16.413 Atomic orbital electron populations 1.24963 0.95876 0.97758 1.01097 1.22610 0.93944 1.01952 1.00429 1.19055 0.84544 0.84877 1.01807 1.87861 1.21970 1.25188 1.95599 1.22184 0.79447 0.96022 1.02156 1.21470 0.93179 0.97632 1.05499 1.20238 0.89810 0.83093 0.76032 1.90688 1.65249 1.36162 1.50684 1.48038 1.07596 1.05521 1.72219 1.21692 0.78883 1.01579 0.98694 1.22396 0.99449 0.95336 1.01039 1.21416 0.94588 0.96394 0.97994 1.21137 0.96153 0.90047 0.87424 0.94275 1.22627 1.00228 0.97111 0.96595 1.22779 1.00407 0.97899 0.96615 1.21915 0.93859 0.88288 0.96772 1.44463 1.50291 1.18739 1.18891 1.18487 1.35901 0.83362 1.00715 0.89932 1.26015 0.94928 0.96186 0.98359 1.69787 1.43752 1.25159 1.15277 0.86583 0.77348 0.84847 0.78660 1.21153 1.23155 1.19106 1.21882 0.96597 0.98332 0.99107 1.21852 0.94698 0.85692 0.99506 0.76183 0.90722 0.90509 0.92164 0.91748 0.87760 0.88331 0.92703 0.89551 0.91795 0.86770 0.93116 0.91511 0.92336 0.92128 0.92053 0.95636 0.94177 0.92546 0.89459 0.91698 0.92011 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.19 -2.05 13.73 -37.12 -0.51 -2.56 16 3 C 0.17 1.75 6.41 34.37 0.22 1.97 16 4 O -0.39 -4.79 10.30 -35.23 -0.36 -5.15 16 5 C 0.08 0.96 5.23 37.16 0.19 1.15 16 6 C -0.14 -1.68 4.42 -27.89 -0.12 -1.81 16 7 C 0.52 8.11 7.70 -10.99 -0.08 8.02 16 8 O -0.55 -10.39 15.40 5.55 0.09 -10.30 16 9 N -0.60 -8.93 2.97 -172.80 -0.51 -9.45 16 10 C 0.11 1.78 6.43 -3.71 -0.02 1.75 16 11 C -0.14 -2.55 5.00 -26.61 -0.13 -2.69 16 12 C -0.08 -1.33 1.90 -90.58 -0.17 -1.50 16 13 C 0.16 2.90 2.93 -66.95 -0.20 2.70 16 14 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.13 -1.93 6.29 -24.90 -0.16 -2.09 16 16 C -0.14 -2.29 7.08 -24.59 -0.17 -2.46 16 17 C 0.12 2.32 6.24 -2.53 -0.02 2.30 16 18 N -0.60 -13.04 1.29 -162.58 -0.21 -13.24 16 19 C -0.26 -6.69 8.76 -15.06 -0.13 -6.82 16 20 H 0.08 2.35 5.45 -52.48 -0.29 2.06 16 21 C 0.05 1.34 5.50 -17.43 -0.10 1.24 16 22 N -0.90 -26.83 13.97 55.49 0.78 -26.06 16 23 Si 0.90 22.12 25.50 -169.99 -4.33 17.79 16 24 H -0.28 -6.92 6.73 56.52 0.38 -6.54 16 25 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 26 H -0.27 -6.42 6.96 56.52 0.39 -6.03 16 27 C -0.12 -1.79 4.91 -26.63 -0.13 -1.92 16 28 C 0.11 1.30 6.34 -3.73 -0.02 1.28 16 29 H 0.22 1.13 7.80 -54.08 -0.42 0.70 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.10 1.26 7.69 -51.93 -0.40 0.86 16 35 H 0.10 1.00 7.94 -51.93 -0.41 0.59 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.50 7.01 -51.93 -0.36 1.13 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.11 2.53 4.24 -51.93 -0.22 2.31 16 40 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 41 H 0.07 0.90 6.20 -51.93 -0.32 0.58 16 42 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.07 8.00 -51.93 -0.42 0.66 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.04 0.89 4.86 -51.93 -0.25 0.63 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.09 1.61 7.19 -51.93 -0.37 1.24 16 49 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.08 0.83 5.93 -51.93 -0.31 0.53 16 LS Contribution 393.00 15.07 5.92 5.92 Total: -1.00 -31.89 393.00 -7.97 -39.86 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.34 Total: 3.11 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -0.99 Total: -2.47 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.05 Total: -48.75 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.28 Total: -15.45 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.33 Total: 17.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.89 -7.97 -39.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230569551.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.479 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds