Wall clock time and date at job start Tue Mar 31 2020 19:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46637 * 177.83854 * 3 2 1 5 5 C 1.42899 * 113.99988 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47741 * 179.97438 * 5 4 3 7 7 C 1.50690 * 109.47660 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99844 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00270 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.62996 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.77739 * 233.58703 * 10 9 7 12 12 C 1.53038 * 109.31274 * 305.37174 * 11 10 9 13 13 C 1.52999 * 109.45938 * 181.38766 * 12 11 10 14 14 H 1.08992 * 110.00116 * 51.95422 * 13 12 11 15 15 C 1.54320 * 109.77416 * 173.11632 * 13 12 11 16 16 C 1.55151 * 102.86704 * 141.88363 * 15 13 12 17 17 C 1.54910 * 101.57864 * 324.29972 * 16 15 13 18 18 N 1.47023 * 109.87977 * 290.85713 * 13 12 11 19 19 C 1.36934 * 125.64821 * 61.68045 * 18 13 12 20 20 H 1.08004 * 120.00193 * 301.13377 * 19 18 13 21 21 C 1.38812 * 120.00197 * 121.40494 * 19 18 13 22 22 N 1.31624 * 119.99923 * 175.60427 * 21 19 18 23 23 Si 1.86799 * 119.99755 * 355.60124 * 21 19 18 24 24 H 1.48501 * 109.47175 * 84.84131 * 23 21 19 25 25 H 1.48507 * 109.46948 * 204.83695 * 23 21 19 26 26 H 1.48500 * 109.47238 * 324.83498 * 23 21 19 27 27 C 1.53031 * 109.54115 * 61.35920 * 12 11 10 28 28 C 1.46922 * 120.63085 * 359.97438 * 9 7 6 29 29 H 4.38443 * 5.44487 * 180.02562 * 4 1 2 30 30 H 1.08997 * 109.46783 * 57.83631 * 3 2 1 31 31 H 1.08999 * 109.47278 * 297.83565 * 3 2 1 32 32 H 1.09002 * 109.47101 * 59.99467 * 5 4 3 33 33 H 1.08999 * 109.46918 * 300.00154 * 5 4 3 34 34 H 1.09002 * 109.46969 * 59.99740 * 6 5 4 35 35 H 1.08999 * 109.47330 * 300.00256 * 6 5 4 36 36 H 1.09002 * 109.58456 * 113.80061 * 10 9 7 37 37 H 1.08995 * 109.59021 * 353.37762 * 10 9 7 38 38 H 1.09002 * 109.49728 * 185.41595 * 11 10 9 39 39 H 1.09003 * 109.49616 * 65.32076 * 11 10 9 40 40 H 1.09008 * 109.45616 * 301.35435 * 12 11 10 41 41 H 1.08994 * 110.92519 * 23.46233 * 15 13 12 42 42 H 1.09007 * 110.58553 * 260.14232 * 15 13 12 43 43 H 1.09003 * 111.00550 * 206.22938 * 16 15 13 44 44 H 1.09001 * 111.04091 * 82.38534 * 16 15 13 45 45 H 1.09003 * 110.36797 * 278.17224 * 17 16 15 46 46 H 1.09001 * 110.46403 * 155.90059 * 17 16 15 47 47 H 0.97008 * 119.99449 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.49919 * 58.58922 * 27 12 11 49 49 H 1.09006 * 109.50319 * 178.68262 * 27 12 11 50 50 H 1.08997 * 109.58902 * 246.19689 * 28 9 7 51 51 H 1.08997 * 109.58630 * 6.48150 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1217 1.3472 -0.0508 5 6 4.5461 1.4607 -0.0557 6 6 4.9400 2.9380 -0.1120 7 6 6.4422 3.0577 -0.1165 8 8 7.1301 2.0595 -0.0788 9 7 7.0212 4.2739 -0.1623 10 6 8.4844 4.4066 -0.1667 11 6 8.8972 5.3522 0.9657 12 6 8.1454 6.6770 0.8182 13 6 8.5809 7.6364 1.9276 14 1 9.6680 7.7118 1.9497 15 6 7.9604 9.0287 1.6871 16 6 7.6075 9.5022 3.1218 17 6 7.1800 8.1725 3.7917 18 7 8.0864 7.1565 3.2263 19 6 8.4175 5.9657 3.8158 20 1 8.2137 5.0357 3.3060 21 6 9.0098 5.9537 5.0712 22 7 9.2490 4.8089 5.6751 23 14 9.4676 7.5623 5.9032 24 1 8.2847 8.1032 6.6197 25 1 10.5667 7.3227 6.8728 26 1 9.9156 8.5396 4.8788 27 6 6.6396 6.4254 0.9237 28 6 6.2012 5.4921 -0.2088 29 1 -1.0502 -0.0004 0.0002 30 1 3.0096 -0.5462 -0.8699 31 1 3.0096 -0.4790 0.9087 32 1 4.9488 0.9442 -0.9270 33 1 4.9495 1.0111 0.8517 34 1 4.5373 3.4549 0.7591 35 1 4.5367 3.3872 -1.0195 36 1 8.8113 4.8164 -1.1224 37 1 8.9405 3.4290 -0.0110 38 1 9.9705 5.5351 0.9138 39 1 8.6509 4.8990 1.9260 40 1 8.3727 7.1173 -0.1527 41 1 7.0625 8.9540 1.0738 42 1 8.6877 9.6984 1.2279 43 1 6.7827 10.2147 3.1064 44 1 8.4792 9.9275 3.6191 45 1 6.1450 7.9379 3.5430 46 1 7.3052 8.2329 4.8728 47 1 9.6626 4.8006 6.5525 48 1 6.4145 5.9622 1.8843 49 1 6.1059 7.3724 0.8420 50 1 6.3416 5.9907 -1.1679 51 1 5.1506 5.2304 -0.0834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230569551.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:25 Heat of formation + Delta-G solvation = -21.612654 kcal Electronic energy + Delta-G solvation = -29880.468917 eV Core-core repulsion = 25974.336993 eV Total energy + Delta-G solvation = -3906.131924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.37395 -40.02901 -39.06265 -37.65909 -34.64563 -34.52749 -34.04415 -32.72795 -31.85161 -31.43724 -29.41155 -27.97113 -26.37095 -25.69554 -24.48757 -23.85117 -22.37624 -21.54308 -20.61444 -19.81731 -19.26240 -18.91781 -18.44328 -17.55433 -17.39993 -17.23976 -16.59561 -16.39076 -16.19390 -15.86880 -15.46356 -15.11365 -14.84728 -14.76503 -14.51985 -14.37682 -14.19140 -13.94118 -13.77878 -13.62786 -13.16881 -13.10427 -12.99485 -12.71618 -12.61586 -12.53733 -12.47144 -12.37078 -12.05591 -11.79645 -11.76367 -11.54638 -11.53327 -11.46911 -11.19570 -11.06525 -10.87482 -10.77477 -10.59587 -10.58482 -9.56337 -8.34338 -7.94618 -5.85585 1.30334 1.36583 1.42531 1.49307 1.58899 1.81846 2.06151 2.42106 2.89674 3.11962 3.48340 3.52122 3.64446 3.92087 3.97571 3.99416 4.07415 4.14602 4.22044 4.27426 4.30199 4.32813 4.36609 4.42380 4.43950 4.52287 4.60669 4.70085 4.74480 4.78923 4.80990 4.87886 4.89932 4.92908 5.02319 5.06169 5.09527 5.11293 5.19354 5.32790 5.43692 5.44295 5.54645 5.60845 5.69352 5.82720 6.03334 6.04653 6.45043 6.49499 6.59216 7.05075 7.14121 7.56082 8.37502 9.01520 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012742 B = 0.002885 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.985175 B = 9704.607404 C =10157.054194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.240 4.240 3 C 0.166 3.834 4 O -0.398 6.398 5 C 0.083 3.917 6 C -0.128 4.128 7 C 0.511 3.489 8 O -0.593 6.593 9 N -0.603 5.603 10 C 0.120 3.880 11 C -0.140 4.140 12 C -0.077 4.077 13 C 0.149 3.851 14 H 0.015 0.985 15 C -0.114 4.114 16 C -0.131 4.131 17 C 0.108 3.892 18 N -0.611 5.611 19 C -0.227 4.227 20 H 0.049 0.951 21 C -0.015 4.015 22 N -0.955 5.955 23 Si 0.954 3.046 24 H -0.278 1.278 25 H -0.315 1.315 26 H -0.254 1.254 27 C -0.114 4.114 28 C 0.106 3.894 29 H 0.256 0.744 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.049 0.951 45 H 0.037 0.963 46 H 0.015 0.985 47 H 0.260 0.740 48 H 0.041 0.959 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.153 3.218 -16.873 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.241 4.241 3 C 0.091 3.909 4 O -0.318 6.318 5 C 0.006 3.994 6 C -0.167 4.167 7 C 0.301 3.699 8 O -0.475 6.475 9 N -0.335 5.335 10 C -0.002 4.002 11 C -0.178 4.178 12 C -0.097 4.097 13 C 0.043 3.957 14 H 0.033 0.967 15 C -0.151 4.151 16 C -0.169 4.169 17 C -0.016 4.016 18 N -0.338 5.338 19 C -0.356 4.356 20 H 0.066 0.934 21 C -0.212 4.212 22 N -0.599 5.599 23 Si 0.783 3.217 24 H -0.205 1.205 25 H -0.244 1.244 26 H -0.178 1.178 27 C -0.152 4.152 28 C -0.016 4.016 29 H 0.272 0.728 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.125 0.875 35 H 0.148 0.852 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.116 0.884 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.033 0.967 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.110 0.890 50 H 0.116 0.884 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.814 2.734 -16.690 21.219 hybrid contribution 0.928 -0.239 1.549 1.821 sum -11.886 2.495 -15.141 19.410 Atomic orbital electron populations 1.25881 0.96765 0.95650 0.99187 1.23040 0.94773 1.03931 1.02311 1.19228 0.84834 0.84054 1.02822 1.87818 1.21594 1.26711 1.95671 1.22071 0.79653 0.96150 1.01521 1.21426 0.90441 0.97849 1.07024 1.20879 0.91176 0.82724 0.75127 1.90667 1.66483 1.37675 1.52667 1.48193 1.07406 1.06435 1.71484 1.21529 0.79823 0.99699 0.99168 1.22209 0.99378 0.96967 0.99200 1.21372 0.95199 0.94461 0.98683 1.21347 0.95200 0.93043 0.86077 0.96665 1.22619 1.01765 0.94494 0.96243 1.22755 1.01232 0.96205 0.96718 1.22032 0.94064 0.89830 0.95661 1.44547 1.51166 1.17767 1.20273 1.18362 1.33054 0.84380 0.99854 0.93382 1.26696 0.96181 0.98744 0.99613 1.69935 1.46791 1.27289 1.15859 0.85629 0.76748 0.81606 0.77693 1.20453 1.24381 1.17843 1.21782 0.95759 0.99792 0.97871 1.22082 0.95320 0.84104 1.00070 0.72785 0.89135 0.90119 0.91718 0.93559 0.87511 0.85221 0.89414 0.92373 0.92685 0.92074 0.89432 0.88627 0.89887 0.88448 0.93177 0.94548 0.96711 0.93058 0.94053 0.88975 0.88408 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 19.25 74.32 1.43 -1.13 16 2 C -0.24 -5.03 13.73 31.13 0.43 -4.60 16 3 C 0.17 3.35 6.41 70.18 0.45 3.80 16 4 O -0.40 -9.66 10.30 -148.98 -1.53 -11.20 16 5 C 0.08 2.02 5.23 71.98 0.38 2.40 16 6 C -0.13 -2.97 4.42 29.84 0.13 -2.84 16 7 C 0.51 15.92 7.70 87.65 0.67 16.59 16 8 O -0.59 -23.41 15.40 -3.05 -0.05 -23.46 16 9 N -0.60 -17.22 2.97 -818.99 -2.43 -19.66 16 10 C 0.12 3.75 6.43 86.36 0.56 4.31 16 11 C -0.14 -5.04 5.00 30.67 0.15 -4.89 16 12 C -0.08 -2.27 1.90 -10.77 -0.02 -2.29 16 13 C 0.15 5.15 2.93 45.34 0.13 5.28 16 14 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 15 C -0.11 -2.86 6.29 31.78 0.20 -2.66 16 16 C -0.13 -3.78 7.08 31.98 0.23 -3.55 16 17 C 0.11 4.14 6.24 86.86 0.54 4.68 16 18 N -0.61 -26.61 1.29 -668.27 -0.86 -27.47 16 19 C -0.23 -12.41 8.76 84.03 0.74 -11.67 16 20 H 0.05 2.99 5.45 -2.91 -0.02 2.97 16 21 C -0.02 -0.90 5.50 84.86 0.47 -0.43 16 22 N -0.96 -60.65 13.97 21.65 0.30 -60.35 16 23 Si 0.95 47.28 25.50 68.60 1.75 49.03 16 24 H -0.28 -13.30 6.73 99.48 0.67 -12.63 16 25 H -0.31 -16.03 7.11 99.48 0.71 -15.33 16 26 H -0.25 -11.90 6.96 99.48 0.69 -11.21 16 27 C -0.11 -3.03 4.91 30.66 0.15 -2.88 16 28 C 0.11 2.21 6.34 86.35 0.55 2.76 16 29 H 0.26 1.78 7.80 -4.41 -0.03 1.75 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.50 8.10 -2.39 -0.02 1.49 16 33 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 34 H 0.11 2.45 7.69 -2.39 -0.02 2.43 16 35 H 0.13 2.20 7.94 -2.39 -0.02 2.19 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.06 2.13 7.01 -2.39 -0.02 2.12 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 2.91 4.24 -2.39 -0.01 2.90 16 40 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.10 1.91 6.20 -2.39 -0.01 1.90 16 42 H 0.08 1.77 8.14 -2.38 -0.02 1.76 16 43 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.05 1.57 8.00 -2.39 -0.02 1.55 16 45 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.01 0.64 4.86 -2.39 -0.01 0.63 16 47 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 48 H 0.04 1.50 7.19 -2.39 -0.02 1.48 16 49 H 0.09 1.97 6.44 -2.38 -0.02 1.95 16 50 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.10 1.71 5.93 -2.39 -0.01 1.70 16 Total: -1.00 -76.95 393.00 5.21 -71.73 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.86 Total: 18.50 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 7.18 Total: 2.87 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -2.99 Total: -107.47 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.58 Total: -34.66 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.75 Total: 49.03 kcal Total: -76.95 5.21 -71.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230569551.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.119 kcal (2) G-P(sol) polarization free energy of solvation -76.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds