Wall clock time and date at job start Tue Mar 31 2020 19:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42899 * 109.46938 * 150.61402 * 3 2 1 5 5 C 1.42897 * 114.00028 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47294 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47155 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00145 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00109 * 180.02562 * 7 6 5 10 10 C 1.46935 * 120.63014 * 2.38251 * 9 7 6 11 11 C 1.53187 * 108.77733 * 126.41566 * 10 9 7 12 12 C 1.53038 * 109.31562 * 54.63313 * 11 10 9 13 13 C 1.53041 * 109.53676 * 298.63839 * 12 11 10 14 14 C 1.46924 * 120.63340 * 182.40516 * 9 7 6 15 15 H 1.09004 * 109.58556 * 113.65866 * 14 9 7 16 16 C 1.52997 * 109.58590 * 353.37523 * 14 9 7 17 17 H 1.08996 * 110.88865 * 54.63742 * 16 14 9 18 18 C 1.55158 * 111.00350 * 290.75205 * 16 14 9 19 19 C 1.54321 * 102.94424 * 206.38850 * 18 16 14 20 20 N 1.47025 * 107.27215 * 22.19091 * 19 18 16 21 21 C 1.36936 * 125.64952 * 181.02318 * 20 19 18 22 22 H 1.07996 * 119.99640 * 175.89265 * 21 20 19 23 23 C 1.38809 * 119.99807 * 355.89934 * 21 20 19 24 24 N 1.31618 * 119.99743 * 159.05607 * 23 21 20 25 25 Si 1.86799 * 120.00077 * 339.04831 * 23 21 20 26 26 H 1.48497 * 109.47343 * 186.00989 * 25 23 21 27 27 H 1.48499 * 109.47158 * 66.00892 * 25 23 21 28 28 H 1.48501 * 109.47173 * 306.00850 * 25 23 21 29 29 C 1.47429 * 108.70101 * 1.28946 * 20 19 18 30 30 H 4.38446 * 5.44442 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.46866 * 30.61312 * 3 2 1 32 32 H 1.08997 * 109.46732 * 270.61286 * 3 2 1 33 33 H 1.09000 * 109.47324 * 59.99866 * 5 4 3 34 34 H 1.09002 * 109.47200 * 299.99800 * 5 4 3 35 35 H 1.09000 * 109.46870 * 59.99802 * 6 5 4 36 36 H 1.09002 * 109.47009 * 300.00131 * 6 5 4 37 37 H 1.09000 * 109.58484 * 246.20097 * 10 9 7 38 38 H 1.08998 * 109.58208 * 6.48156 * 10 9 7 39 39 H 1.08993 * 109.50050 * 174.59017 * 11 10 9 40 40 H 1.09007 * 109.49680 * 294.68541 * 11 10 9 41 41 H 1.09001 * 109.45695 * 58.65527 * 12 11 10 42 42 H 1.08998 * 109.46139 * 178.61751 * 12 11 10 43 43 H 1.08999 * 109.49829 * 301.41079 * 13 12 11 44 44 H 1.09003 * 109.49451 * 181.31490 * 13 12 11 45 45 H 1.08994 * 110.72197 * 88.02059 * 18 16 14 46 46 H 1.09004 * 110.71782 * 324.75132 * 18 16 14 47 47 H 1.09000 * 109.87829 * 262.77744 * 19 18 16 48 48 H 1.08994 * 109.88738 * 141.60805 * 19 18 16 49 49 H 0.96996 * 120.00600 * 5.01134 * 24 23 21 50 50 H 1.08995 * 110.36663 * 94.48238 * 29 20 19 51 51 H 1.09003 * 110.36533 * 216.80248 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1219 1.1748 -0.6611 5 6 4.5463 1.2741 -0.7160 6 6 4.9402 2.5620 -1.4420 7 6 6.4424 2.6670 -1.4993 8 8 7.1303 1.7971 -1.0083 9 7 7.0216 3.7275 -2.0962 10 6 6.2025 4.8147 -2.6495 11 6 6.6844 6.1440 -2.0601 12 6 8.1857 6.2961 -2.3147 13 6 8.9401 5.1589 -1.6220 14 6 8.4839 3.8183 -2.2064 15 1 8.7758 3.7561 -3.2548 16 6 9.1293 2.6719 -1.4253 17 1 8.7373 1.7092 -1.7532 18 6 8.9342 2.8607 0.1023 19 6 10.1373 2.1019 0.7008 20 7 11.1673 2.0221 -0.3452 21 6 12.3847 1.4074 -0.2214 22 1 13.0474 1.3458 -1.0718 23 6 12.7667 0.8636 0.9973 24 7 13.7027 -0.0607 1.0409 25 14 11.9526 1.4436 2.5753 26 1 12.6318 0.8219 3.7403 27 1 10.5211 1.0483 2.5680 28 1 12.0574 2.9217 2.6721 29 6 10.6750 2.7191 -1.5475 30 1 -1.0501 -0.0002 0.0003 31 1 3.0098 -0.8836 -0.5233 32 1 3.0093 -0.0102 1.0276 33 1 4.9499 0.4163 -1.2539 34 1 4.9487 1.2899 0.2969 35 1 4.5366 3.4200 -0.9044 36 1 4.5378 2.5457 -2.4549 37 1 6.3083 4.8362 -3.7341 38 1 5.1568 4.6540 -2.3874 39 1 6.1498 6.9672 -2.5341 40 1 6.4944 6.1563 -0.9868 41 1 8.3777 6.2589 -3.3871 42 1 8.5264 7.2524 -1.9179 43 1 8.7288 5.1804 -0.5529 44 1 10.0110 5.2809 -1.7842 45 1 7.9952 2.4143 0.4293 46 1 8.9734 3.9171 0.3684 47 1 9.8320 1.0985 0.9978 48 1 10.5258 2.6438 1.5630 49 1 14.1765 -0.3099 0.2319 50 1 11.0258 3.7510 -1.5581 51 1 11.0001 2.1978 -2.4479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269555423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:05 Heat of formation + Delta-G solvation = 40.544930 kcal Electronic energy + Delta-G solvation = -30206.238571 eV Core-core repulsion = 26302.802003 eV Total energy + Delta-G solvation = -3903.436568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.96673 -38.54772 -37.59535 -37.13020 -33.90600 -33.35910 -32.89535 -31.71387 -31.03066 -29.00415 -28.00847 -27.33762 -25.40148 -24.23706 -23.67653 -22.65918 -21.14472 -20.62772 -19.69574 -18.92761 -18.49657 -17.48967 -17.09088 -16.71584 -16.17144 -15.90067 -15.62206 -15.32768 -15.16814 -14.89277 -14.54588 -14.23110 -13.78794 -13.71160 -13.48201 -13.16687 -13.06162 -12.84767 -12.69304 -12.54652 -12.06860 -12.02440 -11.78771 -11.69395 -11.37302 -11.20609 -10.99142 -10.87596 -10.82330 -10.77254 -10.64850 -10.47657 -10.27785 -10.08580 -9.85530 -9.65133 -9.32886 -8.97910 -8.78081 -8.39867 -8.36187 -6.87908 -6.18632 -3.02644 2.12345 2.46072 2.58445 2.84271 3.55244 3.57984 3.59785 3.81352 4.15979 4.44503 4.51549 4.66820 4.72513 4.73859 4.79316 4.87205 4.94959 4.97712 5.07003 5.07679 5.14987 5.21225 5.28777 5.34955 5.49952 5.53601 5.54961 5.55738 5.57817 5.59467 5.69842 5.74850 5.81068 5.83063 5.93249 5.99209 6.03918 6.27573 6.30905 6.48181 6.57797 6.65635 6.72337 6.79429 6.85830 7.07649 7.20775 7.21287 7.38160 7.83707 8.23068 8.47271 9.19988 9.75012 10.42569 11.32461 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.003529 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.063531 B = 7933.136398 C =10146.883493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.190 4.190 3 C 0.173 3.827 4 O -0.388 6.388 5 C 0.076 3.924 6 C -0.138 4.138 7 C 0.505 3.495 8 O -0.504 6.504 9 N -0.606 5.606 10 C 0.107 3.893 11 C -0.135 4.135 12 C -0.120 4.120 13 C -0.141 4.141 14 C 0.161 3.839 15 H 0.071 0.929 16 C -0.095 4.095 17 H 0.112 0.888 18 C -0.123 4.123 19 C 0.117 3.883 20 N -0.611 5.611 21 C -0.320 4.320 22 H 0.076 0.924 23 C -0.027 4.027 24 N -0.930 5.930 25 Si 1.071 2.929 26 H -0.304 1.304 27 H -0.282 1.282 28 H -0.302 1.302 29 C 0.135 3.865 30 H 0.221 0.779 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.054 0.946 47 H 0.043 0.957 48 H 0.019 0.981 49 H 0.259 0.741 50 H 0.018 0.982 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.355 10.671 -7.788 28.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.190 4.190 3 C 0.097 3.903 4 O -0.308 6.308 5 C 0.000 4.000 6 C -0.178 4.178 7 C 0.293 3.707 8 O -0.381 6.381 9 N -0.340 5.340 10 C -0.016 4.016 11 C -0.173 4.173 12 C -0.157 4.157 13 C -0.179 4.179 14 C 0.058 3.942 15 H 0.089 0.911 16 C -0.114 4.114 17 H 0.130 0.870 18 C -0.160 4.160 19 C -0.008 4.008 20 N -0.339 5.339 21 C -0.447 4.447 22 H 0.093 0.907 23 C -0.226 4.226 24 N -0.573 5.573 25 Si 0.906 3.094 26 H -0.233 1.233 27 H -0.209 1.209 28 H -0.231 1.231 29 C 0.008 3.992 30 H 0.238 0.762 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.036 0.964 49 H 0.069 0.931 50 H 0.036 0.964 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -25.054 10.025 -5.973 27.638 hybrid contribution 0.128 0.424 -1.649 1.708 sum -24.926 10.448 -7.622 28.081 Atomic orbital electron populations 1.24968 0.95882 0.98534 1.00285 1.22608 0.93931 1.01611 1.00814 1.19066 0.84511 0.88845 0.97860 1.87835 1.21936 1.42251 1.78772 1.22202 0.79533 0.97418 1.00871 1.21517 0.93447 0.99471 1.03352 1.20259 0.89546 0.82376 0.78536 1.90793 1.62997 1.40107 1.44188 1.48053 1.07045 1.20573 1.58334 1.21747 0.95037 0.86600 0.98237 1.21913 0.96927 0.96699 1.01767 1.21531 0.94585 0.98835 1.00765 1.22205 1.00846 0.93561 1.01277 1.21207 0.77787 0.95780 0.99423 0.91068 1.22933 0.94780 0.98357 0.95320 0.87034 1.23100 0.98960 0.98839 0.95114 1.21898 0.89033 0.97944 0.91904 1.44791 1.15078 1.64424 1.09564 1.20113 0.93302 1.33190 0.98097 0.90661 1.25735 1.00352 0.96202 1.00319 1.70930 1.28013 1.26482 1.31846 0.83829 0.75025 0.74743 0.75794 1.23255 1.20943 1.23058 1.21762 0.91547 0.94929 0.90972 0.76180 0.90528 0.90488 0.91823 0.91785 0.88404 0.88377 0.91354 0.89738 0.90907 0.91426 0.91933 0.91765 0.90508 0.90072 0.89439 0.92736 0.93892 0.96424 0.93077 0.96406 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 19.25 29.55 0.57 -0.87 16 2 C -0.19 -1.85 13.73 -37.12 -0.51 -2.36 16 3 C 0.17 1.57 6.41 34.37 0.22 1.79 16 4 O -0.39 -4.11 10.30 -35.23 -0.36 -4.47 16 5 C 0.08 0.77 5.23 37.16 0.19 0.97 16 6 C -0.14 -1.24 4.43 -27.89 -0.12 -1.37 16 7 C 0.50 6.12 7.22 -10.99 -0.08 6.04 16 8 O -0.50 -8.09 9.06 5.56 0.05 -8.04 16 9 N -0.61 -6.61 2.96 -165.22 -0.49 -7.10 16 10 C 0.11 0.78 6.34 -3.71 -0.02 0.76 16 11 C -0.13 -0.97 6.08 -26.61 -0.16 -1.13 16 12 C -0.12 -1.04 5.88 -26.69 -0.16 -1.20 16 13 C -0.14 -1.69 4.72 -26.61 -0.13 -1.81 16 14 C 0.16 2.10 2.80 -67.60 -0.19 1.92 16 15 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 16 C -0.09 -1.68 2.14 -88.35 -0.19 -1.87 16 17 H 0.11 2.22 5.94 -52.18 -0.31 1.91 16 18 C -0.12 -2.33 5.33 -24.90 -0.13 -2.47 16 19 C 0.12 2.82 4.58 -3.06 -0.01 2.81 16 20 N -0.61 -16.16 3.35 -169.93 -0.57 -16.73 16 21 C -0.32 -9.73 10.52 -15.06 -0.16 -9.89 16 22 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 23 C -0.03 -0.85 5.48 -17.43 -0.10 -0.95 16 24 N -0.93 -30.65 13.70 55.49 0.76 -29.89 16 25 Si 1.07 28.72 24.57 -169.99 -4.18 24.54 16 26 H -0.30 -8.23 7.11 56.52 0.40 -7.82 16 27 H -0.28 -7.06 5.26 56.52 0.30 -6.76 16 28 H -0.30 -7.82 6.94 56.52 0.39 -7.42 16 29 C 0.13 2.86 6.62 -2.41 -0.02 2.85 16 30 H 0.22 0.91 7.80 -54.08 -0.42 0.49 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.10 0.75 7.59 -51.93 -0.39 0.36 16 36 H 0.10 0.74 8.03 -51.93 -0.42 0.33 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.47 5.94 -51.93 -0.31 0.16 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.02 5.65 -51.93 -0.29 0.73 16 44 H 0.08 1.05 6.51 -51.93 -0.34 0.72 16 45 H 0.09 1.64 5.51 -52.01 -0.29 1.35 16 46 H 0.05 0.96 5.36 -51.93 -0.28 0.68 16 47 H 0.04 1.12 6.52 -51.93 -0.34 0.79 16 48 H 0.02 0.46 4.28 -51.93 -0.22 0.23 16 49 H 0.26 8.42 8.73 -40.82 -0.36 8.07 16 50 H 0.02 0.37 6.13 -51.93 -0.32 0.05 16 51 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -36.61 381.55 -8.29 -44.90 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -8.26 Total: -2.17 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.99 Total: -6.79 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.30 Total: -53.72 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.31 Total: -12.51 kcal Atomic # 14 Polarization: 28.72 SS G_CDS: -4.18 Total: 24.54 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.61 -8.29 -44.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269555423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.444 kcal (2) G-P(sol) polarization free energy of solvation -36.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds