Wall clock time and date at job start Tue Mar 31 2020 19:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42899 * 109.46938 * 150.61402 * 3 2 1 5 5 C 1.42897 * 114.00028 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47294 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47155 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00145 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00109 * 180.02562 * 7 6 5 10 10 C 1.46935 * 120.63014 * 2.38251 * 9 7 6 11 11 C 1.53187 * 108.77733 * 126.41566 * 10 9 7 12 12 C 1.53038 * 109.31562 * 54.63313 * 11 10 9 13 13 C 1.53041 * 109.53676 * 298.63839 * 12 11 10 14 14 C 1.46924 * 120.63340 * 182.40516 * 9 7 6 15 15 H 1.09004 * 109.58556 * 113.65866 * 14 9 7 16 16 C 1.52997 * 109.58590 * 353.37523 * 14 9 7 17 17 H 1.08996 * 110.88865 * 54.63742 * 16 14 9 18 18 C 1.55158 * 111.00350 * 290.75205 * 16 14 9 19 19 C 1.54321 * 102.94424 * 206.38850 * 18 16 14 20 20 N 1.47025 * 107.27215 * 22.19091 * 19 18 16 21 21 C 1.36936 * 125.64952 * 181.02318 * 20 19 18 22 22 H 1.07996 * 119.99640 * 175.89265 * 21 20 19 23 23 C 1.38809 * 119.99807 * 355.89934 * 21 20 19 24 24 N 1.31618 * 119.99743 * 159.05607 * 23 21 20 25 25 Si 1.86799 * 120.00077 * 339.04831 * 23 21 20 26 26 H 1.48497 * 109.47343 * 186.00989 * 25 23 21 27 27 H 1.48499 * 109.47158 * 66.00892 * 25 23 21 28 28 H 1.48501 * 109.47173 * 306.00850 * 25 23 21 29 29 C 1.47429 * 108.70101 * 1.28946 * 20 19 18 30 30 H 4.38446 * 5.44442 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.46866 * 30.61312 * 3 2 1 32 32 H 1.08997 * 109.46732 * 270.61286 * 3 2 1 33 33 H 1.09000 * 109.47324 * 59.99866 * 5 4 3 34 34 H 1.09002 * 109.47200 * 299.99800 * 5 4 3 35 35 H 1.09000 * 109.46870 * 59.99802 * 6 5 4 36 36 H 1.09002 * 109.47009 * 300.00131 * 6 5 4 37 37 H 1.09000 * 109.58484 * 246.20097 * 10 9 7 38 38 H 1.08998 * 109.58208 * 6.48156 * 10 9 7 39 39 H 1.08993 * 109.50050 * 174.59017 * 11 10 9 40 40 H 1.09007 * 109.49680 * 294.68541 * 11 10 9 41 41 H 1.09001 * 109.45695 * 58.65527 * 12 11 10 42 42 H 1.08998 * 109.46139 * 178.61751 * 12 11 10 43 43 H 1.08999 * 109.49829 * 301.41079 * 13 12 11 44 44 H 1.09003 * 109.49451 * 181.31490 * 13 12 11 45 45 H 1.08994 * 110.72197 * 88.02059 * 18 16 14 46 46 H 1.09004 * 110.71782 * 324.75132 * 18 16 14 47 47 H 1.09000 * 109.87829 * 262.77744 * 19 18 16 48 48 H 1.08994 * 109.88738 * 141.60805 * 19 18 16 49 49 H 0.96996 * 120.00600 * 5.01134 * 24 23 21 50 50 H 1.08995 * 110.36663 * 94.48238 * 29 20 19 51 51 H 1.09003 * 110.36533 * 216.80248 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1219 1.1748 -0.6611 5 6 4.5463 1.2741 -0.7160 6 6 4.9402 2.5620 -1.4420 7 6 6.4424 2.6670 -1.4993 8 8 7.1303 1.7971 -1.0083 9 7 7.0216 3.7275 -2.0962 10 6 6.2025 4.8147 -2.6495 11 6 6.6844 6.1440 -2.0601 12 6 8.1857 6.2961 -2.3147 13 6 8.9401 5.1589 -1.6220 14 6 8.4839 3.8183 -2.2064 15 1 8.7758 3.7561 -3.2548 16 6 9.1293 2.6719 -1.4253 17 1 8.7373 1.7092 -1.7532 18 6 8.9342 2.8607 0.1023 19 6 10.1373 2.1019 0.7008 20 7 11.1673 2.0221 -0.3452 21 6 12.3847 1.4074 -0.2214 22 1 13.0474 1.3458 -1.0718 23 6 12.7667 0.8636 0.9973 24 7 13.7027 -0.0607 1.0409 25 14 11.9526 1.4436 2.5753 26 1 12.6318 0.8219 3.7403 27 1 10.5211 1.0483 2.5680 28 1 12.0574 2.9217 2.6721 29 6 10.6750 2.7191 -1.5475 30 1 -1.0501 -0.0002 0.0003 31 1 3.0098 -0.8836 -0.5233 32 1 3.0093 -0.0102 1.0276 33 1 4.9499 0.4163 -1.2539 34 1 4.9487 1.2899 0.2969 35 1 4.5366 3.4200 -0.9044 36 1 4.5378 2.5457 -2.4549 37 1 6.3083 4.8362 -3.7341 38 1 5.1568 4.6540 -2.3874 39 1 6.1498 6.9672 -2.5341 40 1 6.4944 6.1563 -0.9868 41 1 8.3777 6.2589 -3.3871 42 1 8.5264 7.2524 -1.9179 43 1 8.7288 5.1804 -0.5529 44 1 10.0110 5.2809 -1.7842 45 1 7.9952 2.4143 0.4293 46 1 8.9734 3.9171 0.3684 47 1 9.8320 1.0985 0.9978 48 1 10.5258 2.6438 1.5630 49 1 14.1765 -0.3099 0.2319 50 1 11.0258 3.7510 -1.5581 51 1 11.0001 2.1978 -2.4479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269555423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:04 Heat of formation + Delta-G solvation = 15.781510 kcal Electronic energy + Delta-G solvation = -30207.312394 eV Core-core repulsion = 26302.802003 eV Total energy + Delta-G solvation = -3904.510391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.99129 -39.48318 -38.85162 -38.22395 -35.22377 -34.41604 -33.88097 -33.22996 -31.99152 -30.76556 -29.44955 -28.05513 -26.54336 -25.49933 -24.84622 -23.89147 -22.58483 -21.83290 -21.05084 -19.87509 -19.49535 -19.18460 -18.12481 -17.50787 -17.28668 -16.92255 -16.82449 -16.64885 -16.31175 -15.89629 -15.48737 -15.35013 -15.01235 -14.92866 -14.73458 -14.61954 -14.31863 -14.04807 -13.93874 -13.52140 -13.34375 -13.24227 -12.94212 -12.84888 -12.69014 -12.44523 -12.21992 -12.09018 -11.89242 -11.73696 -11.57633 -11.53018 -11.49355 -11.44361 -11.36363 -11.12979 -10.88219 -10.69517 -10.57122 -9.98087 -9.38839 -9.10304 -8.67294 -5.43848 1.37196 1.44496 1.44973 1.66795 1.68412 1.82270 2.01332 2.50124 2.89089 3.05238 3.35793 3.53258 3.67389 3.73723 3.85763 3.93298 4.02237 4.07430 4.14331 4.17667 4.22457 4.25475 4.31245 4.39779 4.43211 4.43971 4.50143 4.55365 4.68226 4.71834 4.76375 4.79737 4.85840 4.88294 4.91333 4.99165 5.03276 5.10774 5.14911 5.18681 5.27934 5.28569 5.36683 5.49794 5.53325 5.58789 5.78529 6.06000 6.08419 6.52354 6.59667 6.81924 7.30822 7.47627 8.12529 8.84933 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.003529 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.063531 B = 7933.136398 C =10146.883493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.396 6.396 5 C 0.078 3.922 6 C -0.126 4.126 7 C 0.501 3.499 8 O -0.553 6.553 9 N -0.602 5.602 10 C 0.101 3.899 11 C -0.131 4.131 12 C -0.115 4.115 13 C -0.138 4.138 14 C 0.167 3.833 15 H 0.081 0.919 16 C -0.076 4.076 17 H 0.090 0.910 18 C -0.107 4.107 19 C 0.110 3.890 20 N -0.633 5.633 21 C -0.312 4.312 22 H 0.047 0.953 23 C -0.084 4.084 24 N -0.962 5.962 25 Si 1.110 2.890 26 H -0.308 1.308 27 H -0.258 1.258 28 H -0.285 1.285 29 C 0.128 3.872 30 H 0.255 0.745 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.018 0.982 48 H 0.017 0.983 49 H 0.246 0.754 50 H 0.035 0.965 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.366 13.588 -8.483 33.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.316 6.316 5 C 0.002 3.998 6 C -0.165 4.165 7 C 0.291 3.709 8 O -0.433 6.433 9 N -0.335 5.335 10 C -0.020 4.020 11 C -0.169 4.169 12 C -0.153 4.153 13 C -0.176 4.176 14 C 0.064 3.936 15 H 0.099 0.901 16 C -0.096 4.096 17 H 0.108 0.892 18 C -0.144 4.144 19 C -0.014 4.014 20 N -0.360 5.360 21 C -0.441 4.441 22 H 0.065 0.935 23 C -0.277 4.277 24 N -0.607 5.607 25 Si 0.938 3.062 26 H -0.237 1.237 27 H -0.184 1.184 28 H -0.213 1.213 29 C 0.002 3.998 30 H 0.271 0.729 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.036 0.964 48 H 0.034 0.966 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -29.117 12.999 -6.726 32.589 hybrid contribution 1.342 -0.494 -1.572 2.125 sum -27.775 12.505 -8.298 31.570 Atomic orbital electron populations 1.25869 0.96763 0.96580 0.98385 1.23040 0.94756 1.03484 1.02657 1.19185 0.84775 0.88649 0.98239 1.87801 1.21842 1.42967 1.79020 1.22135 0.79458 0.97882 1.00367 1.21445 0.90873 0.99485 1.04715 1.20815 0.90755 0.81743 0.77587 1.90771 1.64236 1.41790 1.46462 1.48137 1.06214 1.21304 1.57845 1.22085 0.95601 0.85199 0.99096 1.21911 0.95797 0.97438 1.01718 1.21512 0.95367 0.97449 1.00939 1.22145 1.00535 0.94176 1.00773 1.20990 0.79294 0.94293 0.99060 0.90078 1.22701 0.91941 0.99637 0.95280 0.89203 1.23051 0.96747 0.99178 0.95423 1.21994 0.90291 0.97368 0.91781 1.44933 1.14245 1.64795 1.12074 1.20060 0.94487 1.32525 0.97044 0.93523 1.27016 1.00898 0.96173 1.03625 1.71032 1.29732 1.28664 1.31228 0.83358 0.75560 0.75126 0.72108 1.23674 1.18384 1.21302 1.22013 0.94372 0.94831 0.88552 0.72867 0.89907 0.89896 0.92905 0.92827 0.86249 0.86232 0.89690 0.87301 0.88169 0.92039 0.90912 0.91077 0.91755 0.91515 0.88692 0.90827 0.96396 0.96595 0.94459 0.94690 0.95583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 19.25 74.32 1.43 -0.77 16 2 C -0.24 -4.41 13.73 31.13 0.43 -3.98 16 3 C 0.17 2.94 6.41 70.18 0.45 3.39 16 4 O -0.40 -7.87 10.30 -148.98 -1.53 -9.40 16 5 C 0.08 1.50 5.23 71.98 0.38 1.88 16 6 C -0.13 -1.89 4.43 29.85 0.13 -1.76 16 7 C 0.50 11.07 7.22 87.66 0.63 11.70 16 8 O -0.55 -17.42 9.06 -3.04 -0.03 -17.45 16 9 N -0.60 -11.25 2.96 -795.03 -2.35 -13.60 16 10 C 0.10 0.99 6.34 86.36 0.55 1.54 16 11 C -0.13 -1.24 6.08 30.67 0.19 -1.06 16 12 C -0.12 -1.55 5.88 30.62 0.18 -1.37 16 13 C -0.14 -2.96 4.72 30.67 0.14 -2.81 16 14 C 0.17 4.02 2.80 44.97 0.13 4.14 16 15 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 16 C -0.08 -2.67 2.14 -9.32 -0.02 -2.69 16 17 H 0.09 3.62 5.94 -7.14 -0.04 3.57 16 18 C -0.11 -3.96 5.33 31.78 0.17 -3.79 16 19 C 0.11 5.32 4.58 86.73 0.40 5.71 16 20 N -0.63 -34.16 3.35 -691.55 -2.32 -36.48 16 21 C -0.31 -19.76 10.52 84.03 0.88 -18.87 16 22 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 23 C -0.08 -5.45 5.48 84.86 0.47 -4.98 16 24 N -0.96 -65.82 13.70 21.65 0.30 -65.53 16 25 Si 1.11 58.98 24.57 68.60 1.69 60.66 16 26 H -0.31 -16.43 7.11 99.48 0.71 -15.72 16 27 H -0.26 -12.66 5.26 99.48 0.52 -12.13 16 28 H -0.29 -14.26 6.94 99.48 0.69 -13.57 16 29 C 0.13 5.48 6.62 86.93 0.58 6.06 16 30 H 0.26 1.22 7.80 -4.41 -0.03 1.19 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 34 H 0.05 1.12 8.10 -2.39 -0.02 1.11 16 35 H 0.12 1.33 7.59 -2.39 -0.02 1.32 16 36 H 0.12 1.33 8.03 -2.39 -0.02 1.32 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.11 0.60 5.94 -2.39 -0.01 0.59 16 39 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.06 0.70 8.14 -2.38 -0.02 0.69 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 1.54 5.65 -2.39 -0.01 1.53 16 44 H 0.07 1.61 6.51 -2.39 -0.02 1.60 16 45 H 0.10 3.47 5.51 -4.30 -0.02 3.45 16 46 H 0.07 2.44 5.36 -2.38 -0.01 2.43 16 47 H 0.02 0.96 6.52 -2.39 -0.02 0.94 16 48 H 0.02 0.81 4.28 -2.39 -0.01 0.80 16 49 H 0.25 16.86 8.73 -92.71 -0.81 16.05 16 50 H 0.04 1.41 6.13 -2.39 -0.01 1.40 16 51 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -83.91 381.55 3.49 -80.42 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.64 Total: 9.03 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 7.11 Total: -7.66 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -4.37 Total: -115.61 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.56 Total: -26.85 kcal Atomic # 14 Polarization: 58.98 SS G_CDS: 1.69 Total: 60.66 kcal Total: -83.91 3.49 -80.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269555423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.200 kcal (2) G-P(sol) polarization free energy of solvation -83.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds