Wall clock time and date at job start Tue Mar 31 2020 19:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47259 * 307.38248 * 3 2 1 5 5 C 1.42905 * 114.00309 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47187 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.46685 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00473 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99580 * 179.97438 * 7 6 5 10 10 C 1.46929 * 120.63324 * 357.92133 * 9 7 6 11 11 C 1.53192 * 108.77749 * 233.62891 * 10 9 7 12 12 C 1.53042 * 109.31234 * 305.36596 * 11 10 9 13 13 C 1.53039 * 109.54041 * 61.36538 * 12 11 10 14 14 C 1.46932 * 120.63002 * 177.94295 * 9 7 6 15 15 H 1.09004 * 109.58527 * 246.15699 * 14 9 7 16 16 C 1.52993 * 109.58700 * 6.44301 * 14 9 7 17 17 H 1.09007 * 110.88627 * 305.18147 * 16 14 9 18 18 C 1.55154 * 111.00748 * 181.29719 * 16 14 9 19 19 C 1.54364 * 102.92594 * 206.44913 * 18 16 14 20 20 N 1.47030 * 107.28499 * 22.14081 * 19 18 16 21 21 C 1.36931 * 125.64742 * 181.05264 * 20 19 18 22 22 H 1.08005 * 119.99939 * 180.02562 * 21 20 19 23 23 C 1.38813 * 120.00033 * 0.04242 * 21 20 19 24 24 N 1.31617 * 120.00042 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99853 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47110 * 90.00232 * 25 23 21 27 27 H 1.48501 * 109.46747 * 210.00028 * 25 23 21 28 28 H 1.48494 * 109.47095 * 329.99915 * 25 23 21 29 29 C 1.47426 * 108.70334 * 1.09207 * 20 19 18 30 30 H 4.38447 * 5.44332 * 180.02562 * 4 1 2 31 31 H 1.09005 * 109.46962 * 187.38764 * 3 2 1 32 32 H 1.08994 * 109.47412 * 67.39020 * 3 2 1 33 33 H 1.09005 * 109.46459 * 60.00495 * 5 4 3 34 34 H 1.08997 * 109.47327 * 300.00818 * 5 4 3 35 35 H 1.08996 * 109.46957 * 60.00205 * 6 5 4 36 36 H 1.08996 * 109.46935 * 300.00026 * 6 5 4 37 37 H 1.09011 * 109.58286 * 113.84227 * 10 9 7 38 38 H 1.09001 * 109.70213 * 353.49027 * 10 9 7 39 39 H 1.08990 * 109.49672 * 65.31740 * 11 10 9 40 40 H 1.08999 * 109.49682 * 185.41251 * 11 10 9 41 41 H 1.09000 * 109.45682 * 181.38890 * 12 11 10 42 42 H 1.09004 * 109.45952 * 301.34215 * 12 11 10 43 43 H 1.09000 * 109.49996 * 178.68299 * 13 12 11 44 44 H 1.08995 * 109.49512 * 58.58542 * 13 12 11 45 45 H 1.09001 * 110.72129 * 324.79440 * 18 16 14 46 46 H 1.09006 * 110.71769 * 88.06067 * 18 16 14 47 47 H 1.08997 * 109.84941 * 262.73432 * 19 18 16 48 48 H 1.08997 * 110.03051 * 141.64495 * 19 18 16 49 49 H 0.97005 * 119.99961 * 179.97438 * 24 23 21 50 50 H 1.08997 * 110.36809 * 217.03423 * 29 20 19 51 51 H 1.08996 * 110.46196 * 94.75630 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1227 -0.8171 1.0705 5 6 4.5473 -0.8854 1.1599 6 6 4.9422 -1.7832 2.3341 7 6 6.4445 -1.8547 2.4286 8 8 7.1317 -1.2479 1.6347 9 7 7.0244 -2.5932 3.3955 10 6 6.2061 -3.2973 4.3921 11 6 6.6830 -2.8988 5.7923 12 6 8.1853 -3.1660 5.9104 13 6 8.9385 -2.3170 4.8837 14 6 8.4871 -2.7090 3.4732 15 1 8.7836 -3.7375 3.2673 16 6 9.1309 -1.7743 2.4473 17 1 8.7441 -1.9697 1.4470 18 6 10.6774 -1.8945 2.4788 19 6 11.1415 -0.5136 1.9682 20 7 10.0367 0.4297 2.1945 21 6 10.0400 1.7576 1.8601 22 1 9.1750 2.3694 2.0697 23 6 11.1550 2.3173 1.2516 24 7 12.2093 1.5718 0.9964 25 14 11.1598 4.1290 0.7961 26 1 11.6895 4.9239 1.9331 27 1 12.0197 4.3372 -0.3966 28 1 9.7741 4.5659 0.4896 29 6 8.9252 -0.2905 2.8420 30 1 -1.0499 -0.0002 0.0000 31 1 3.0088 1.0200 0.1321 32 1 3.0095 -0.3942 -0.9486 33 1 4.9499 0.1154 1.3158 34 1 4.9499 -1.2990 0.2353 35 1 4.5395 -2.7840 2.1778 36 1 4.5395 -1.3700 3.2588 37 1 6.3167 -4.3738 4.2611 38 1 5.1590 -3.0200 4.2700 39 1 6.4882 -1.8388 5.9550 40 1 6.1491 -3.4861 6.5394 41 1 8.5225 -2.9063 6.9139 42 1 8.3822 -4.2217 5.7232 43 1 10.0099 -2.4903 4.9841 44 1 8.7224 -1.2625 5.0550 45 1 11.0301 -2.0680 3.4955 46 1 11.0163 -2.6869 1.8114 47 1 11.3687 -0.5699 0.9036 48 1 12.0245 -0.1894 2.5189 49 1 12.9883 1.9629 0.5708 50 1 7.9683 0.0726 2.4670 51 1 8.9759 -0.1755 3.9246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269555425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:12 Heat of formation + Delta-G solvation = 32.572784 kcal Electronic energy + Delta-G solvation = -30297.681742 eV Core-core repulsion = 26393.899476 eV Total energy + Delta-G solvation = -3903.782267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.76504 -38.38919 -37.37124 -36.78141 -33.75521 -33.19173 -32.76097 -31.47560 -30.69089 -28.85420 -27.39702 -26.90269 -25.28839 -24.26267 -23.91995 -22.49886 -20.96094 -20.06072 -19.57428 -18.75278 -18.29583 -17.20543 -16.71602 -16.51374 -15.93042 -15.69793 -15.32258 -15.10430 -15.00805 -14.49200 -14.39342 -14.08135 -13.74445 -13.54160 -13.37717 -13.04395 -12.84316 -12.61235 -12.32320 -12.01475 -11.93031 -11.60888 -11.54852 -11.51081 -11.18173 -10.99183 -10.79785 -10.74892 -10.74741 -10.67937 -10.64261 -10.38464 -9.96618 -9.86569 -9.72812 -9.66074 -9.53128 -9.44974 -8.70501 -8.37698 -8.23970 -6.54319 -5.53225 -2.83082 2.23135 2.55332 2.78984 3.01088 3.49289 3.53756 3.56163 3.70364 4.27921 4.59927 4.64659 4.66281 4.79961 4.87856 4.95297 5.02702 5.08986 5.13234 5.19726 5.27700 5.28025 5.44015 5.45670 5.56745 5.63315 5.66698 5.69149 5.70800 5.74972 5.83692 5.84658 5.88750 5.94672 6.06094 6.13125 6.21816 6.37616 6.46244 6.58335 6.73849 6.83624 6.92892 6.96275 7.17301 7.30379 7.43843 7.56392 7.74812 7.84105 8.00680 8.43149 8.48211 9.42280 10.04313 10.73011 11.58972 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007670 B = 0.004074 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3649.807216 B = 6871.566662 C = 9880.125838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.187 4.187 3 C 0.172 3.828 4 O -0.389 6.389 5 C 0.076 3.924 6 C -0.136 4.136 7 C 0.498 3.502 8 O -0.492 6.492 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.135 4.135 12 C -0.119 4.119 13 C -0.141 4.141 14 C 0.162 3.838 15 H 0.066 0.934 16 C -0.096 4.096 17 H 0.107 0.893 18 C -0.150 4.150 19 C 0.182 3.818 20 N -0.603 5.603 21 C -0.213 4.213 22 H 0.073 0.927 23 C -0.015 4.015 24 N -0.926 5.926 25 Si 0.907 3.093 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 C 0.143 3.857 30 H 0.221 0.779 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.041 0.959 48 H 0.037 0.963 49 H 0.249 0.751 50 H 0.061 0.939 51 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.020 -12.778 6.337 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.187 4.187 3 C 0.096 3.904 4 O -0.309 6.309 5 C 0.000 4.000 6 C -0.176 4.176 7 C 0.286 3.714 8 O -0.368 6.368 9 N -0.343 5.343 10 C -0.015 4.015 11 C -0.174 4.174 12 C -0.156 4.156 13 C -0.179 4.179 14 C 0.059 3.941 15 H 0.084 0.916 16 C -0.115 4.115 17 H 0.124 0.876 18 C -0.189 4.189 19 C 0.057 3.943 20 N -0.329 5.329 21 C -0.342 4.342 22 H 0.091 0.909 23 C -0.210 4.210 24 N -0.575 5.575 25 Si 0.739 3.261 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.209 1.209 29 C 0.018 3.982 30 H 0.238 0.762 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.079 0.921 51 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -17.615 -12.384 5.914 22.330 hybrid contribution 0.079 1.008 -0.231 1.038 sum -17.537 -11.376 5.682 21.662 Atomic orbital electron populations 1.24937 0.95860 1.00049 0.99138 1.22634 0.93949 1.00845 1.01262 1.19070 0.84427 0.95777 0.91094 1.87825 1.22078 1.69734 1.51221 1.22216 0.79331 1.00257 0.98235 1.21499 0.93630 1.02162 1.00352 1.20259 0.89524 0.79466 0.82117 1.90871 1.62828 1.41948 1.41121 1.48025 1.06972 1.49927 1.29333 1.21710 0.95127 0.96637 0.88062 1.21918 0.96889 1.02315 0.96243 1.21528 0.94702 0.99976 0.99438 1.22184 1.00390 1.01447 0.93854 1.21234 0.77855 0.99214 0.95773 0.91596 1.22865 0.93743 0.95621 0.99257 0.87557 1.23099 0.95746 1.00168 0.99884 1.21045 0.90367 0.83965 0.98909 1.44449 1.12565 1.05968 1.69917 1.19046 0.99542 0.83765 1.31859 0.90868 1.24757 0.96556 0.97868 1.01814 1.69977 1.05125 1.33771 1.48588 0.86167 0.77110 0.85207 0.77644 1.21882 1.21837 1.20870 1.22113 0.92805 0.89605 0.93698 0.76224 0.90426 0.90559 0.91612 0.91880 0.88567 0.88523 0.91563 0.89834 0.91351 0.91057 0.91896 0.92153 0.90513 0.90066 0.92852 0.92822 0.94110 0.94512 0.94088 0.92092 0.97638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 19.25 29.55 0.57 -1.08 16 2 C -0.19 -2.04 13.73 -37.12 -0.51 -2.55 16 3 C 0.17 1.80 6.41 34.37 0.22 2.02 16 4 O -0.39 -4.69 10.30 -35.23 -0.36 -5.06 16 5 C 0.08 0.91 5.23 37.16 0.19 1.11 16 6 C -0.14 -1.46 4.43 -27.88 -0.12 -1.59 16 7 C 0.50 7.00 7.18 -10.99 -0.08 6.92 16 8 O -0.49 -9.10 9.06 5.56 0.05 -9.04 16 9 N -0.61 -7.55 2.96 -165.21 -0.49 -8.04 16 10 C 0.11 0.93 6.33 -3.71 -0.02 0.90 16 11 C -0.14 -1.14 6.08 -26.61 -0.16 -1.30 16 12 C -0.12 -1.15 5.88 -26.69 -0.16 -1.31 16 13 C -0.14 -1.85 4.73 -26.61 -0.13 -1.98 16 14 C 0.16 2.30 2.79 -67.60 -0.19 2.11 16 15 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 16 C -0.10 -1.81 2.12 -88.47 -0.19 -2.00 16 17 H 0.11 2.25 5.96 -52.06 -0.31 1.94 16 18 C -0.15 -3.00 6.33 -24.88 -0.16 -3.15 16 19 C 0.18 4.76 5.38 -3.04 -0.02 4.74 16 20 N -0.60 -16.61 3.39 -170.04 -0.58 -17.18 16 21 C -0.21 -6.36 10.28 -15.06 -0.15 -6.51 16 22 H 0.07 2.13 7.83 -52.48 -0.41 1.72 16 23 C -0.01 -0.44 5.49 -17.43 -0.10 -0.54 16 24 N -0.93 -28.71 10.31 55.49 0.57 -28.14 16 25 Si 0.91 23.29 29.55 -169.99 -5.02 18.26 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 29 C 0.14 3.22 5.66 -2.53 -0.01 3.21 16 30 H 0.22 1.10 7.80 -54.10 -0.42 0.68 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.10 0.86 8.02 -51.93 -0.42 0.44 16 36 H 0.10 0.92 7.61 -51.93 -0.40 0.53 16 37 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.08 0.58 5.95 -51.93 -0.31 0.27 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.04 6.51 -51.93 -0.34 0.70 16 44 H 0.08 1.26 5.68 -51.93 -0.30 0.96 16 45 H 0.05 0.97 6.14 -51.93 -0.32 0.65 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.04 1.19 7.38 -51.93 -0.38 0.80 16 48 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 49 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.06 1.45 5.41 -52.15 -0.28 1.17 16 51 H 0.01 0.14 5.36 -51.93 -0.28 -0.14 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -35.30 389.15 -9.31 -44.61 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.33 Total: -0.28 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.01 Total: -1.00 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.49 Total: -53.36 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.31 Total: -14.10 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.30 -9.31 -44.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269555425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.181 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds