Wall clock time and date at job start Tue Mar 31 2020 19:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47259 * 307.38248 * 3 2 1 5 5 C 1.42905 * 114.00309 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47187 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.46685 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00473 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99580 * 179.97438 * 7 6 5 10 10 C 1.46929 * 120.63324 * 357.92133 * 9 7 6 11 11 C 1.53192 * 108.77749 * 233.62891 * 10 9 7 12 12 C 1.53042 * 109.31234 * 305.36596 * 11 10 9 13 13 C 1.53039 * 109.54041 * 61.36538 * 12 11 10 14 14 C 1.46932 * 120.63002 * 177.94295 * 9 7 6 15 15 H 1.09004 * 109.58527 * 246.15699 * 14 9 7 16 16 C 1.52993 * 109.58700 * 6.44301 * 14 9 7 17 17 H 1.09007 * 110.88627 * 305.18147 * 16 14 9 18 18 C 1.55154 * 111.00748 * 181.29719 * 16 14 9 19 19 C 1.54364 * 102.92594 * 206.44913 * 18 16 14 20 20 N 1.47030 * 107.28499 * 22.14081 * 19 18 16 21 21 C 1.36931 * 125.64742 * 181.05264 * 20 19 18 22 22 H 1.08005 * 119.99939 * 180.02562 * 21 20 19 23 23 C 1.38813 * 120.00033 * 0.04242 * 21 20 19 24 24 N 1.31617 * 120.00042 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99853 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47110 * 90.00232 * 25 23 21 27 27 H 1.48501 * 109.46747 * 210.00028 * 25 23 21 28 28 H 1.48494 * 109.47095 * 329.99915 * 25 23 21 29 29 C 1.47426 * 108.70334 * 1.09207 * 20 19 18 30 30 H 4.38447 * 5.44332 * 180.02562 * 4 1 2 31 31 H 1.09005 * 109.46962 * 187.38764 * 3 2 1 32 32 H 1.08994 * 109.47412 * 67.39020 * 3 2 1 33 33 H 1.09005 * 109.46459 * 60.00495 * 5 4 3 34 34 H 1.08997 * 109.47327 * 300.00818 * 5 4 3 35 35 H 1.08996 * 109.46957 * 60.00205 * 6 5 4 36 36 H 1.08996 * 109.46935 * 300.00026 * 6 5 4 37 37 H 1.09011 * 109.58286 * 113.84227 * 10 9 7 38 38 H 1.09001 * 109.70213 * 353.49027 * 10 9 7 39 39 H 1.08990 * 109.49672 * 65.31740 * 11 10 9 40 40 H 1.08999 * 109.49682 * 185.41251 * 11 10 9 41 41 H 1.09000 * 109.45682 * 181.38890 * 12 11 10 42 42 H 1.09004 * 109.45952 * 301.34215 * 12 11 10 43 43 H 1.09000 * 109.49996 * 178.68299 * 13 12 11 44 44 H 1.08995 * 109.49512 * 58.58542 * 13 12 11 45 45 H 1.09001 * 110.72129 * 324.79440 * 18 16 14 46 46 H 1.09006 * 110.71769 * 88.06067 * 18 16 14 47 47 H 1.08997 * 109.84941 * 262.73432 * 19 18 16 48 48 H 1.08997 * 110.03051 * 141.64495 * 19 18 16 49 49 H 0.97005 * 119.99961 * 179.97438 * 24 23 21 50 50 H 1.08997 * 110.36809 * 217.03423 * 29 20 19 51 51 H 1.08996 * 110.46196 * 94.75630 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1227 -0.8171 1.0705 5 6 4.5473 -0.8854 1.1599 6 6 4.9422 -1.7832 2.3341 7 6 6.4445 -1.8547 2.4286 8 8 7.1317 -1.2479 1.6347 9 7 7.0244 -2.5932 3.3955 10 6 6.2061 -3.2973 4.3921 11 6 6.6830 -2.8988 5.7923 12 6 8.1853 -3.1660 5.9104 13 6 8.9385 -2.3170 4.8837 14 6 8.4871 -2.7090 3.4732 15 1 8.7836 -3.7375 3.2673 16 6 9.1309 -1.7743 2.4473 17 1 8.7441 -1.9697 1.4470 18 6 10.6774 -1.8945 2.4788 19 6 11.1415 -0.5136 1.9682 20 7 10.0367 0.4297 2.1945 21 6 10.0400 1.7576 1.8601 22 1 9.1750 2.3694 2.0697 23 6 11.1550 2.3173 1.2516 24 7 12.2093 1.5718 0.9964 25 14 11.1598 4.1290 0.7961 26 1 11.6895 4.9239 1.9331 27 1 12.0197 4.3372 -0.3966 28 1 9.7741 4.5659 0.4896 29 6 8.9252 -0.2905 2.8420 30 1 -1.0499 -0.0002 0.0000 31 1 3.0088 1.0200 0.1321 32 1 3.0095 -0.3942 -0.9486 33 1 4.9499 0.1154 1.3158 34 1 4.9499 -1.2990 0.2353 35 1 4.5395 -2.7840 2.1778 36 1 4.5395 -1.3700 3.2588 37 1 6.3167 -4.3738 4.2611 38 1 5.1590 -3.0200 4.2700 39 1 6.4882 -1.8388 5.9550 40 1 6.1491 -3.4861 6.5394 41 1 8.5225 -2.9063 6.9139 42 1 8.3822 -4.2217 5.7232 43 1 10.0099 -2.4903 4.9841 44 1 8.7224 -1.2625 5.0550 45 1 11.0301 -2.0680 3.4955 46 1 11.0163 -2.6869 1.8114 47 1 11.3687 -0.5699 0.9036 48 1 12.0245 -0.1894 2.5189 49 1 12.9883 1.9629 0.5708 50 1 7.9683 0.0726 2.4670 51 1 8.9759 -0.1755 3.9246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269555425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:11 Heat of formation + Delta-G solvation = 10.154484 kcal Electronic energy + Delta-G solvation = -30298.653873 eV Core-core repulsion = 26393.899476 eV Total energy + Delta-G solvation = -3904.754397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.91523 -39.39311 -38.66206 -38.14347 -35.06079 -34.39949 -33.81984 -32.84096 -31.94603 -30.65984 -28.71162 -27.99436 -26.87035 -25.74755 -24.87290 -23.76380 -22.11910 -21.74416 -20.96273 -19.70271 -19.21626 -18.90967 -18.01217 -17.48808 -17.03443 -16.87548 -16.69694 -16.49623 -16.20522 -15.87599 -15.65666 -15.23215 -14.89380 -14.61965 -14.56344 -14.26354 -14.07139 -13.81423 -13.76418 -13.51016 -13.37458 -13.03237 -12.82003 -12.76613 -12.62261 -12.45738 -12.30025 -12.04601 -11.92899 -11.85092 -11.62886 -11.54019 -11.48750 -11.39745 -11.35374 -11.26128 -11.14853 -10.69344 -10.59681 -9.91910 -9.38512 -8.73948 -7.82964 -5.15940 1.40165 1.43803 1.43964 1.52542 1.72698 1.81316 2.06263 2.49681 2.88981 3.33248 3.50914 3.64948 3.75910 3.89974 3.97699 3.99259 4.04843 4.10559 4.19271 4.25241 4.30158 4.32535 4.38153 4.40796 4.42070 4.51166 4.63017 4.72015 4.76857 4.80210 4.85120 4.87349 4.93216 5.01892 5.02203 5.09034 5.16182 5.21041 5.30145 5.32479 5.35592 5.43110 5.56578 5.64822 5.71560 5.76118 5.89133 6.03166 6.23407 6.56227 6.58640 7.13413 7.36978 7.84084 8.50342 9.27935 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007670 B = 0.004074 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3649.807216 B = 6871.566662 C = 9880.125838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.240 4.240 3 C 0.166 3.834 4 O -0.394 6.394 5 C 0.080 3.920 6 C -0.124 4.124 7 C 0.494 3.506 8 O -0.548 6.548 9 N -0.605 5.605 10 C 0.102 3.898 11 C -0.133 4.133 12 C -0.113 4.113 13 C -0.138 4.138 14 C 0.168 3.832 15 H 0.090 0.910 16 C -0.077 4.077 17 H 0.084 0.916 18 C -0.137 4.137 19 C 0.190 3.810 20 N -0.627 5.627 21 C -0.235 4.235 22 H 0.072 0.928 23 C -0.073 4.073 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.272 1.272 29 C 0.146 3.854 30 H 0.257 0.743 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.073 0.927 47 H -0.001 1.001 48 H 0.002 0.998 49 H 0.245 0.755 50 H 0.049 0.951 51 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.795 -14.764 8.088 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.240 4.240 3 C 0.090 3.910 4 O -0.314 6.314 5 C 0.004 3.996 6 C -0.163 4.163 7 C 0.283 3.717 8 O -0.427 6.427 9 N -0.338 5.338 10 C -0.019 4.019 11 C -0.171 4.171 12 C -0.151 4.151 13 C -0.176 4.176 14 C 0.064 3.936 15 H 0.108 0.892 16 C -0.097 4.097 17 H 0.102 0.898 18 C -0.175 4.175 19 C 0.064 3.936 20 N -0.352 5.352 21 C -0.365 4.365 22 H 0.090 0.910 23 C -0.265 4.265 24 N -0.604 5.604 25 Si 0.807 3.193 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.197 1.197 29 C 0.022 3.978 30 H 0.273 0.727 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.017 0.983 48 H 0.020 0.980 49 H 0.054 0.946 50 H 0.066 0.934 51 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -20.440 -14.409 7.717 26.171 hybrid contribution 0.850 1.627 -0.766 1.990 sum -19.589 -12.781 6.951 24.401 Atomic orbital electron populations 1.25866 0.96703 0.97798 0.96879 1.22981 0.94651 1.02989 1.03413 1.19174 0.84988 0.95730 0.91059 1.87793 1.21662 1.70064 1.51929 1.22095 0.79460 0.99432 0.98658 1.21429 0.91050 1.03444 1.00421 1.20852 0.90791 0.78577 0.81456 1.90855 1.64233 1.44338 1.43322 1.48142 1.06514 1.49512 1.29650 1.22074 0.95536 0.97550 0.86768 1.21927 0.96210 1.01988 0.96951 1.21508 0.95075 1.00148 0.98334 1.22116 1.00746 1.00399 0.94320 1.21080 0.79021 0.98783 0.94667 0.89195 1.22602 0.92954 0.94243 0.99875 0.89786 1.22975 0.96693 0.96657 1.01186 1.20816 0.89438 0.87239 0.96076 1.44816 1.14385 1.05893 1.70156 1.19407 0.99674 0.85300 1.32079 0.91027 1.25663 0.96179 1.02624 1.02012 1.70221 1.05507 1.35535 1.49168 0.85069 0.77471 0.79578 0.77209 1.20994 1.21779 1.19670 1.22237 0.90726 0.91606 0.93234 0.72651 0.90353 0.89784 0.93778 0.92736 0.85765 0.86721 0.89100 0.87678 0.92911 0.87936 0.91234 0.90210 0.91007 0.93059 0.90663 0.90846 0.98296 0.98011 0.94573 0.93357 0.97266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 19.25 74.32 1.43 -1.04 16 2 C -0.24 -5.06 13.73 31.13 0.43 -4.64 16 3 C 0.17 3.54 6.41 70.18 0.45 3.99 16 4 O -0.39 -9.39 10.30 -148.98 -1.53 -10.92 16 5 C 0.08 1.95 5.23 71.98 0.38 2.33 16 6 C -0.12 -2.45 4.43 29.85 0.13 -2.32 16 7 C 0.49 13.51 7.18 87.66 0.63 14.14 16 8 O -0.55 -21.01 9.06 -3.02 -0.03 -21.04 16 9 N -0.60 -13.67 2.96 -794.99 -2.35 -16.02 16 10 C 0.10 1.30 6.33 86.36 0.55 1.85 16 11 C -0.13 -1.70 6.08 30.67 0.19 -1.51 16 12 C -0.11 -1.78 5.88 30.62 0.18 -1.60 16 13 C -0.14 -3.38 4.73 30.67 0.14 -3.24 16 14 C 0.17 4.47 2.79 44.97 0.13 4.60 16 15 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 16 C -0.08 -2.97 2.12 -9.40 -0.02 -2.99 16 17 H 0.08 3.68 5.96 -6.28 -0.04 3.64 16 18 C -0.14 -5.52 6.33 31.80 0.20 -5.32 16 19 C 0.19 10.49 5.38 86.74 0.47 10.96 16 20 N -0.63 -36.38 3.39 -691.89 -2.35 -38.73 16 21 C -0.24 -14.69 10.28 84.03 0.86 -13.83 16 22 H 0.07 4.35 7.83 -2.91 -0.02 4.33 16 23 C -0.07 -4.51 5.49 84.86 0.47 -4.04 16 24 N -0.95 -62.09 10.31 21.65 0.22 -61.87 16 25 Si 0.98 49.44 29.55 68.60 2.03 51.47 16 26 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 28 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 29 C 0.15 6.86 5.66 86.86 0.49 7.35 16 30 H 0.26 1.64 7.80 -4.42 -0.03 1.60 16 31 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.04 1.24 8.10 -2.38 -0.02 1.22 16 34 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 35 H 0.12 1.79 8.02 -2.39 -0.02 1.78 16 36 H 0.11 1.89 7.61 -2.39 -0.02 1.87 16 37 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.11 0.94 5.95 -2.39 -0.01 0.92 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.82 6.51 -2.39 -0.02 1.80 16 44 H 0.05 1.57 5.68 -2.39 -0.01 1.56 16 45 H 0.07 2.71 6.14 -2.39 -0.01 2.70 16 46 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 47 H 0.00 -0.08 7.38 -2.39 -0.02 -0.09 16 48 H 0.00 0.10 7.50 -2.39 -0.02 0.09 16 49 H 0.25 15.38 8.31 -92.70 -0.77 14.61 16 50 H 0.05 2.43 5.41 -7.65 -0.04 2.39 16 51 H 0.01 0.46 5.36 -2.39 -0.01 0.44 16 Total: -1.00 -83.37 389.15 3.94 -79.43 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.86 Total: 13.02 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 7.10 Total: 4.67 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -4.48 Total: -116.62 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.56 Total: -31.96 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.03 Total: 51.47 kcal Total: -83.37 3.94 -79.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269555425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.582 kcal (2) G-P(sol) polarization free energy of solvation -83.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds