Wall clock time and date at job start Tue Mar 31 2020 19:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47310 * 129.17669 * 3 2 1 5 5 C 1.42895 * 114.00382 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47518 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47121 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00590 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99705 * 180.27305 * 7 6 5 10 10 C 1.46925 * 120.63308 * 353.48115 * 9 7 6 11 11 C 1.53189 * 108.77772 * 233.58655 * 10 9 7 12 12 C 1.53034 * 109.31160 * 305.36345 * 11 10 9 13 13 C 1.53040 * 109.54110 * 61.36557 * 12 11 10 14 14 C 1.46922 * 120.63158 * 173.19739 * 9 7 6 15 15 H 1.08995 * 109.58989 * 246.20293 * 14 9 7 16 16 C 1.53004 * 109.58387 * 6.63135 * 14 9 7 17 17 H 1.09000 * 110.64575 * 45.52273 * 16 14 9 18 18 C 1.55159 * 110.72078 * 168.85811 * 16 14 9 19 19 C 1.54903 * 101.58286 * 153.86189 * 18 16 14 20 20 N 1.47422 * 104.83388 * 322.99029 * 19 18 16 21 21 C 1.36936 * 125.64855 * 204.09026 * 20 19 18 22 22 H 1.07999 * 119.99847 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00083 * 0.04843 * 21 20 19 24 24 N 1.31614 * 120.00236 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99962 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47430 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47508 * 119.99370 * 25 23 21 28 28 H 1.48503 * 109.47245 * 239.99430 * 25 23 21 29 29 C 1.47018 * 108.70183 * 24.12707 * 20 19 18 30 30 H 4.38449 * 5.44434 * 180.02562 * 4 1 2 31 31 H 1.08995 * 109.47628 * 9.17457 * 3 2 1 32 32 H 1.09009 * 109.46813 * 249.17296 * 3 2 1 33 33 H 1.08995 * 109.47072 * 59.99912 * 5 4 3 34 34 H 1.09004 * 109.47242 * 299.99743 * 5 4 3 35 35 H 1.09004 * 109.46934 * 59.99249 * 6 5 4 36 36 H 1.09004 * 109.46515 * 300.00017 * 6 5 4 37 37 H 1.09006 * 109.58284 * 353.37160 * 10 9 7 38 38 H 1.09000 * 109.59098 * 113.79260 * 10 9 7 39 39 H 1.09001 * 109.49543 * 65.31378 * 11 10 9 40 40 H 1.08997 * 109.49733 * 185.37794 * 11 10 9 41 41 H 1.09004 * 109.46064 * 181.38330 * 12 11 10 42 42 H 1.09003 * 109.46132 * 301.34541 * 12 11 10 43 43 H 1.09000 * 109.49717 * 58.58213 * 13 12 11 44 44 H 1.08999 * 109.49861 * 178.68513 * 13 12 11 45 45 H 1.09003 * 111.00309 * 271.94321 * 18 16 14 46 46 H 1.09006 * 111.00267 * 35.78297 * 18 16 14 47 47 H 1.09002 * 110.36630 * 204.15004 * 19 18 16 48 48 H 1.09001 * 110.45878 * 81.87724 * 19 18 16 49 49 H 0.96993 * 120.00554 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.88383 * 239.52286 * 29 20 19 51 51 H 1.08999 * 110.01320 * 118.43221 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1220 0.8519 -1.0444 5 6 4.5464 0.9243 -1.1315 6 6 4.9406 1.8588 -2.2771 7 6 6.4428 1.9346 -2.3693 8 8 7.1306 1.3038 -1.5948 9 7 7.0221 2.7082 -3.3088 10 6 6.2097 3.3704 -4.3385 11 6 6.7685 3.0058 -5.7174 12 6 8.2571 3.3570 -5.7692 13 6 9.0114 2.5465 -4.7127 14 6 8.4773 2.9104 -3.3189 15 1 8.7028 3.9539 -3.0992 16 6 9.1276 2.0096 -2.2670 17 1 8.7177 1.0009 -2.3184 18 6 10.6695 1.9891 -2.4393 19 6 11.1387 1.6563 -1.0011 20 7 10.2010 2.3778 -0.1216 21 6 10.4566 2.7734 1.1642 22 1 9.6999 3.2986 1.7281 23 6 11.6884 2.4998 1.7427 24 7 12.6106 1.8597 1.0555 25 14 12.0368 3.0388 3.4969 26 1 10.8455 3.7341 4.0471 27 1 12.3434 1.8477 4.3292 28 1 13.1987 3.9635 3.5092 29 6 8.9457 2.6016 -0.8535 30 1 -1.0501 0.0000 0.0003 31 1 3.0099 -1.0136 -0.1638 32 1 3.0092 0.3662 0.9606 33 1 4.9500 -0.0707 -1.3186 34 1 4.9487 1.3093 -0.1944 35 1 4.5369 2.8538 -2.0896 36 1 4.5383 1.4742 -3.2143 37 1 5.1762 3.0322 -4.2619 38 1 6.2539 4.4506 -4.2002 39 1 6.6406 1.9373 -5.8909 40 1 6.2352 3.5655 -6.4857 41 1 8.6517 3.1213 -6.7576 42 1 8.3863 4.4210 -5.5711 43 1 8.8623 1.4823 -4.8956 44 1 10.0748 2.7798 -4.7658 45 1 10.9740 1.2112 -3.1396 46 1 11.0402 2.9641 -2.7556 47 1 12.1570 2.0114 -0.8426 48 1 11.0794 0.5831 -0.8197 49 1 13.4712 1.6682 1.4598 50 1 8.7422 3.6702 -0.9225 51 1 8.1227 2.0999 -0.3446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269555426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:16 Heat of formation + Delta-G solvation = 26.858755 kcal Electronic energy + Delta-G solvation = -30022.869566 eV Core-core repulsion = 26118.839521 eV Total energy + Delta-G solvation = -3904.030046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.71488 -38.39937 -37.34126 -36.84677 -33.78793 -33.22706 -32.82149 -31.48539 -30.80378 -28.74923 -27.56729 -27.00680 -25.32875 -24.17174 -23.81396 -22.43290 -20.91660 -19.83834 -19.50800 -19.13172 -18.52822 -17.33562 -16.72297 -16.54033 -16.07923 -15.76979 -15.33466 -15.12702 -14.83631 -14.54034 -14.18037 -14.03185 -13.73588 -13.59803 -13.44563 -13.14296 -12.85929 -12.68719 -12.21533 -12.10805 -11.94910 -11.61193 -11.53047 -11.40919 -11.31867 -11.04400 -10.92378 -10.81216 -10.75973 -10.69744 -10.65595 -10.54461 -9.97342 -9.94347 -9.80470 -9.75079 -9.53263 -9.34492 -8.66083 -8.45889 -8.32850 -6.58065 -5.49319 -2.88262 2.20613 2.53002 2.75525 2.99060 3.47632 3.52671 3.55457 3.68001 4.25366 4.56519 4.60272 4.63014 4.74396 4.83343 4.91962 4.98369 5.03468 5.07748 5.16526 5.23807 5.25383 5.42966 5.43921 5.59696 5.60626 5.63713 5.64416 5.67560 5.71939 5.76002 5.83974 5.88398 5.95728 6.01215 6.04414 6.22728 6.33334 6.42463 6.57124 6.65614 6.84989 6.89864 7.01195 7.16794 7.28119 7.44472 7.53764 7.72375 7.80673 8.03135 8.41903 8.55700 9.39997 10.02309 10.70091 11.54603 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008014 B = 0.003683 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3493.024744 B = 7600.089475 C =10633.660926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.188 4.188 3 C 0.172 3.828 4 O -0.388 6.388 5 C 0.077 3.923 6 C -0.137 4.137 7 C 0.502 3.498 8 O -0.498 6.498 9 N -0.610 5.610 10 C 0.107 3.893 11 C -0.134 4.134 12 C -0.121 4.121 13 C -0.128 4.128 14 C 0.160 3.840 15 H 0.070 0.930 16 C -0.092 4.092 17 H 0.104 0.896 18 C -0.145 4.145 19 C 0.155 3.845 20 N -0.606 5.606 21 C -0.210 4.210 22 H 0.074 0.926 23 C -0.017 4.017 24 N -0.925 5.925 25 Si 0.910 3.090 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.148 3.852 30 H 0.221 0.779 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.101 0.899 48 H 0.007 0.993 49 H 0.249 0.751 50 H 0.001 0.999 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.928 0.151 -14.279 23.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.188 4.188 3 C 0.097 3.903 4 O -0.308 6.308 5 C 0.000 4.000 6 C -0.177 4.177 7 C 0.290 3.710 8 O -0.374 6.374 9 N -0.345 5.345 10 C -0.016 4.016 11 C -0.172 4.172 12 C -0.158 4.158 13 C -0.166 4.166 14 C 0.057 3.943 15 H 0.088 0.912 16 C -0.111 4.111 17 H 0.122 0.878 18 C -0.185 4.185 19 C 0.031 3.969 20 N -0.332 5.332 21 C -0.339 4.339 22 H 0.092 0.908 23 C -0.212 4.212 24 N -0.575 5.575 25 Si 0.742 3.258 26 H -0.207 1.207 27 H -0.219 1.219 28 H -0.219 1.219 29 C 0.023 3.977 30 H 0.238 0.762 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.119 0.881 48 H 0.025 0.975 49 H 0.059 0.941 50 H 0.019 0.981 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.520 -0.088 -13.806 23.100 hybrid contribution 0.086 0.268 0.951 0.992 sum -18.434 0.180 -12.856 22.474 Atomic orbital electron populations 1.24950 0.95867 0.99864 0.99214 1.22628 0.93947 1.00952 1.01247 1.19068 0.84457 0.95066 0.91749 1.87828 1.22061 1.67627 1.53312 1.22208 0.79368 0.99715 0.98708 1.21517 0.93662 1.02178 1.00379 1.20269 0.89497 0.80570 0.80682 1.90826 1.62880 1.42904 1.40759 1.48019 1.07738 1.49258 1.29436 1.21722 0.94936 0.97600 0.87382 1.21909 0.96770 1.02062 0.96486 1.21540 0.94796 1.00331 0.99168 1.22052 1.00301 1.00447 0.93846 1.21511 0.77697 0.99694 0.95396 0.91249 1.22655 0.94361 1.00455 0.93659 0.87782 1.23154 0.95202 0.99750 1.00357 1.21835 0.97180 0.94106 0.83825 1.44572 1.10767 1.66258 1.11578 1.19129 0.97911 1.29039 0.87843 0.90804 1.24754 0.96643 1.01356 0.98451 1.69824 1.05761 1.46575 1.35307 0.86039 0.77669 0.77681 0.84431 1.20677 1.21913 1.21948 1.21711 0.90269 0.94995 0.90765 0.76208 0.90581 0.90445 0.91912 0.91652 0.88440 0.88584 0.89832 0.91448 0.91530 0.90972 0.91852 0.91845 0.91571 0.90366 0.92878 0.92823 0.88082 0.97453 0.94062 0.98107 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 19.25 29.55 0.57 -1.02 16 2 C -0.19 -1.99 13.73 -37.12 -0.51 -2.50 16 3 C 0.17 1.74 6.41 34.37 0.22 1.96 16 4 O -0.39 -4.57 10.30 -35.23 -0.36 -4.93 16 5 C 0.08 0.89 5.23 37.16 0.19 1.08 16 6 C -0.14 -1.45 4.50 -27.89 -0.13 -1.57 16 7 C 0.50 6.97 7.37 -10.99 -0.08 6.89 16 8 O -0.50 -8.99 8.90 5.56 0.05 -8.94 16 9 N -0.61 -7.63 2.97 -164.96 -0.49 -8.12 16 10 C 0.11 0.92 6.32 -3.71 -0.02 0.90 16 11 C -0.13 -1.04 6.08 -26.62 -0.16 -1.20 16 12 C -0.12 -1.09 5.88 -26.69 -0.16 -1.25 16 13 C -0.13 -1.53 4.87 -26.38 -0.13 -1.66 16 14 C 0.16 2.33 2.52 -67.37 -0.17 2.16 16 15 H 0.07 1.08 7.78 -51.93 -0.40 0.67 16 16 C -0.09 -1.76 1.89 -88.78 -0.17 -1.93 16 17 H 0.10 2.13 5.90 -52.20 -0.31 1.83 16 18 C -0.15 -2.94 5.16 -24.58 -0.13 -3.06 16 19 C 0.16 4.07 5.89 -2.53 -0.01 4.06 16 20 N -0.61 -16.83 3.39 -170.08 -0.58 -17.41 16 21 C -0.21 -6.27 10.27 -15.06 -0.15 -6.42 16 22 H 0.07 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.02 -0.52 5.49 -17.43 -0.10 -0.61 16 24 N -0.92 -28.35 10.09 55.49 0.56 -27.79 16 25 Si 0.91 23.14 29.55 -169.99 -5.02 18.11 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 C 0.15 3.44 5.89 -3.07 -0.02 3.42 16 30 H 0.22 1.05 7.80 -54.08 -0.42 0.63 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.10 0.93 8.13 -51.93 -0.42 0.50 16 36 H 0.10 0.84 7.43 -51.93 -0.39 0.45 16 37 H 0.08 0.57 5.97 -51.93 -0.31 0.26 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.95 7.12 -51.93 -0.37 0.58 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.05 1.05 7.81 -51.93 -0.41 0.64 16 47 H 0.10 2.93 5.87 -51.93 -0.31 2.62 16 48 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 49 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.00 0.03 7.59 -51.93 -0.39 -0.37 16 51 H 0.05 1.27 5.62 -52.02 -0.29 0.98 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -35.00 394.07 -9.49 -44.49 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.63 Total: -0.59 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.95 Total: -0.76 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.51 Total: -53.32 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.31 Total: -13.87 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.00 -9.49 -44.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269555426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.352 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds