Wall clock time and date at job start Tue Mar 31 2020 19:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47310 * 129.17669 * 3 2 1 5 5 C 1.42895 * 114.00382 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47518 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47121 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00590 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99705 * 180.27305 * 7 6 5 10 10 C 1.46925 * 120.63308 * 353.48115 * 9 7 6 11 11 C 1.53189 * 108.77772 * 233.58655 * 10 9 7 12 12 C 1.53034 * 109.31160 * 305.36345 * 11 10 9 13 13 C 1.53040 * 109.54110 * 61.36557 * 12 11 10 14 14 C 1.46922 * 120.63158 * 173.19739 * 9 7 6 15 15 H 1.08995 * 109.58989 * 246.20293 * 14 9 7 16 16 C 1.53004 * 109.58387 * 6.63135 * 14 9 7 17 17 H 1.09000 * 110.64575 * 45.52273 * 16 14 9 18 18 C 1.55159 * 110.72078 * 168.85811 * 16 14 9 19 19 C 1.54903 * 101.58286 * 153.86189 * 18 16 14 20 20 N 1.47422 * 104.83388 * 322.99029 * 19 18 16 21 21 C 1.36936 * 125.64855 * 204.09026 * 20 19 18 22 22 H 1.07999 * 119.99847 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00083 * 0.04843 * 21 20 19 24 24 N 1.31614 * 120.00236 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99962 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47430 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47508 * 119.99370 * 25 23 21 28 28 H 1.48503 * 109.47245 * 239.99430 * 25 23 21 29 29 C 1.47018 * 108.70183 * 24.12707 * 20 19 18 30 30 H 4.38449 * 5.44434 * 180.02562 * 4 1 2 31 31 H 1.08995 * 109.47628 * 9.17457 * 3 2 1 32 32 H 1.09009 * 109.46813 * 249.17296 * 3 2 1 33 33 H 1.08995 * 109.47072 * 59.99912 * 5 4 3 34 34 H 1.09004 * 109.47242 * 299.99743 * 5 4 3 35 35 H 1.09004 * 109.46934 * 59.99249 * 6 5 4 36 36 H 1.09004 * 109.46515 * 300.00017 * 6 5 4 37 37 H 1.09006 * 109.58284 * 353.37160 * 10 9 7 38 38 H 1.09000 * 109.59098 * 113.79260 * 10 9 7 39 39 H 1.09001 * 109.49543 * 65.31378 * 11 10 9 40 40 H 1.08997 * 109.49733 * 185.37794 * 11 10 9 41 41 H 1.09004 * 109.46064 * 181.38330 * 12 11 10 42 42 H 1.09003 * 109.46132 * 301.34541 * 12 11 10 43 43 H 1.09000 * 109.49717 * 58.58213 * 13 12 11 44 44 H 1.08999 * 109.49861 * 178.68513 * 13 12 11 45 45 H 1.09003 * 111.00309 * 271.94321 * 18 16 14 46 46 H 1.09006 * 111.00267 * 35.78297 * 18 16 14 47 47 H 1.09002 * 110.36630 * 204.15004 * 19 18 16 48 48 H 1.09001 * 110.45878 * 81.87724 * 19 18 16 49 49 H 0.96993 * 120.00554 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.88383 * 239.52286 * 29 20 19 51 51 H 1.08999 * 110.01320 * 118.43221 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1220 0.8519 -1.0444 5 6 4.5464 0.9243 -1.1315 6 6 4.9406 1.8588 -2.2771 7 6 6.4428 1.9346 -2.3693 8 8 7.1306 1.3038 -1.5948 9 7 7.0221 2.7082 -3.3088 10 6 6.2097 3.3704 -4.3385 11 6 6.7685 3.0058 -5.7174 12 6 8.2571 3.3570 -5.7692 13 6 9.0114 2.5465 -4.7127 14 6 8.4773 2.9104 -3.3189 15 1 8.7028 3.9539 -3.0992 16 6 9.1276 2.0096 -2.2670 17 1 8.7177 1.0009 -2.3184 18 6 10.6695 1.9891 -2.4393 19 6 11.1387 1.6563 -1.0011 20 7 10.2010 2.3778 -0.1216 21 6 10.4566 2.7734 1.1642 22 1 9.6999 3.2986 1.7281 23 6 11.6884 2.4998 1.7427 24 7 12.6106 1.8597 1.0555 25 14 12.0368 3.0388 3.4969 26 1 10.8455 3.7341 4.0471 27 1 12.3434 1.8477 4.3292 28 1 13.1987 3.9635 3.5092 29 6 8.9457 2.6016 -0.8535 30 1 -1.0501 0.0000 0.0003 31 1 3.0099 -1.0136 -0.1638 32 1 3.0092 0.3662 0.9606 33 1 4.9500 -0.0707 -1.3186 34 1 4.9487 1.3093 -0.1944 35 1 4.5369 2.8538 -2.0896 36 1 4.5383 1.4742 -3.2143 37 1 5.1762 3.0322 -4.2619 38 1 6.2539 4.4506 -4.2002 39 1 6.6406 1.9373 -5.8909 40 1 6.2352 3.5655 -6.4857 41 1 8.6517 3.1213 -6.7576 42 1 8.3863 4.4210 -5.5711 43 1 8.8623 1.4823 -4.8956 44 1 10.0748 2.7798 -4.7658 45 1 10.9740 1.2112 -3.1396 46 1 11.0402 2.9641 -2.7556 47 1 12.1570 2.0114 -0.8426 48 1 11.0794 0.5831 -0.8197 49 1 13.4712 1.6682 1.4598 50 1 8.7422 3.6702 -0.9225 51 1 8.1227 2.0999 -0.3446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269555426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:15 Heat of formation + Delta-G solvation = 5.214484 kcal Electronic energy + Delta-G solvation = -30023.808132 eV Core-core repulsion = 26118.839521 eV Total energy + Delta-G solvation = -3904.968612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.85286 -39.36033 -38.64744 -38.21946 -35.07762 -34.40234 -33.86937 -32.85599 -32.00952 -30.53178 -29.02733 -27.97764 -26.78329 -25.74658 -24.73979 -23.59927 -22.22307 -21.44831 -20.98958 -20.12766 -19.28217 -18.99886 -18.08046 -17.48916 -17.23394 -16.87338 -16.68180 -16.25399 -16.17190 -15.82128 -15.59667 -15.16429 -14.89928 -14.74678 -14.53689 -14.21874 -14.06113 -13.72563 -13.63689 -13.55127 -13.39011 -13.22455 -12.86352 -12.79857 -12.57427 -12.47782 -12.36071 -12.02414 -11.97717 -11.86263 -11.64708 -11.58035 -11.54286 -11.48230 -11.36749 -11.31161 -11.11465 -10.72621 -10.59701 -9.90540 -9.45599 -8.79496 -7.76321 -5.19881 1.42127 1.43382 1.44682 1.55067 1.69140 1.81212 2.04221 2.49214 2.88649 3.30880 3.50734 3.63661 3.78229 3.80749 3.88414 4.00373 4.05535 4.15994 4.21074 4.22280 4.29150 4.30572 4.38050 4.41083 4.45531 4.52296 4.66001 4.67372 4.75443 4.77426 4.82597 4.84795 4.96809 5.01254 5.02211 5.04023 5.14566 5.19079 5.23414 5.30833 5.32248 5.43277 5.52232 5.63823 5.67730 5.78897 5.87361 6.03216 6.31782 6.54006 6.58552 7.12188 7.34458 7.82026 8.48141 9.25813 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008014 B = 0.003683 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3493.024744 B = 7600.089475 C =10633.660926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.240 4.240 3 C 0.166 3.834 4 O -0.395 6.395 5 C 0.081 3.919 6 C -0.125 4.125 7 C 0.497 3.503 8 O -0.550 6.550 9 N -0.607 5.607 10 C 0.099 3.901 11 C -0.129 4.129 12 C -0.117 4.117 13 C -0.123 4.123 14 C 0.165 3.835 15 H 0.063 0.937 16 C -0.073 4.073 17 H 0.091 0.909 18 C -0.128 4.128 19 C 0.157 3.843 20 N -0.629 5.629 21 C -0.236 4.236 22 H 0.072 0.928 23 C -0.072 4.072 24 N -0.951 5.951 25 Si 0.983 3.017 26 H -0.269 1.269 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.150 3.850 30 H 0.257 0.743 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.114 0.886 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.071 0.929 48 H -0.026 1.026 49 H 0.247 0.753 50 H -0.004 1.004 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.377 1.351 -16.351 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.240 4.240 3 C 0.091 3.909 4 O -0.315 6.315 5 C 0.004 3.996 6 C -0.164 4.164 7 C 0.286 3.714 8 O -0.430 6.430 9 N -0.341 5.341 10 C -0.022 4.022 11 C -0.167 4.167 12 C -0.155 4.155 13 C -0.161 4.161 14 C 0.061 3.939 15 H 0.081 0.919 16 C -0.092 4.092 17 H 0.109 0.891 18 C -0.167 4.167 19 C 0.032 3.968 20 N -0.355 5.355 21 C -0.365 4.365 22 H 0.090 0.910 23 C -0.264 4.264 24 N -0.602 5.602 25 Si 0.810 3.190 26 H -0.193 1.193 27 H -0.218 1.218 28 H -0.213 1.213 29 C 0.026 3.974 30 H 0.273 0.727 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.089 0.911 48 H -0.009 1.009 49 H 0.056 0.944 50 H 0.014 0.986 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -21.011 1.139 -15.929 26.391 hybrid contribution 0.756 -0.131 1.615 1.788 sum -20.256 1.009 -14.314 24.823 Atomic orbital electron populations 1.25873 0.96721 0.97708 0.97018 1.22998 0.94681 1.03020 1.03334 1.19182 0.84940 0.95333 0.91473 1.87795 1.21678 1.68118 1.53921 1.22092 0.79491 0.99625 0.98408 1.21442 0.90955 1.02917 1.01123 1.20878 0.90827 0.79653 0.80011 1.90799 1.64246 1.45204 1.42746 1.48133 1.07143 1.48834 1.29950 1.22083 0.95536 0.97989 0.86574 1.21907 0.95934 1.02399 0.96466 1.21536 0.95411 0.99927 0.98607 1.22001 1.00524 1.00772 0.92842 1.21274 0.79193 0.97930 0.95490 0.91910 1.22417 0.93607 1.00648 0.92574 0.89111 1.22989 0.96078 1.00917 0.96726 1.21654 0.95880 0.91837 0.87467 1.44940 1.12710 1.66191 1.11635 1.19472 0.98307 1.29538 0.89225 0.90975 1.25670 0.96337 1.01523 1.02855 1.70085 1.05889 1.47277 1.36902 0.84945 0.77771 0.77180 0.79059 1.19337 1.21789 1.21306 1.21821 0.88144 0.94621 0.92829 0.72695 0.89708 0.90269 0.92588 0.93638 0.86750 0.85807 0.87417 0.90337 0.91767 0.88103 0.90305 0.91406 0.92024 0.90695 0.90374 0.91863 0.91108 1.00851 0.94373 0.98620 0.94492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 19.25 74.32 1.43 -0.99 16 2 C -0.24 -4.93 13.73 31.13 0.43 -4.50 16 3 C 0.17 3.40 6.41 70.18 0.45 3.85 16 4 O -0.39 -9.14 10.30 -148.98 -1.53 -10.67 16 5 C 0.08 1.89 5.23 71.98 0.38 2.27 16 6 C -0.12 -2.43 4.50 29.85 0.13 -2.30 16 7 C 0.50 13.55 7.37 87.65 0.65 14.19 16 8 O -0.55 -20.65 8.90 -3.03 -0.03 -20.68 16 9 N -0.61 -14.17 2.97 -794.22 -2.36 -16.52 16 10 C 0.10 1.35 6.32 86.36 0.55 1.89 16 11 C -0.13 -1.46 6.08 30.67 0.19 -1.27 16 12 C -0.12 -1.71 5.88 30.62 0.18 -1.53 16 13 C -0.12 -2.68 4.87 30.82 0.15 -2.53 16 14 C 0.16 4.65 2.52 45.13 0.11 4.76 16 15 H 0.06 1.89 7.78 -2.39 -0.02 1.87 16 16 C -0.07 -2.86 1.89 -9.60 -0.02 -2.88 16 17 H 0.09 3.85 5.90 -7.88 -0.05 3.80 16 18 C -0.13 -5.26 5.16 31.98 0.16 -5.10 16 19 C 0.16 8.66 5.89 86.85 0.51 9.17 16 20 N -0.63 -36.66 3.39 -692.02 -2.35 -39.00 16 21 C -0.24 -14.63 10.27 84.03 0.86 -13.77 16 22 H 0.07 4.35 7.83 -2.91 -0.02 4.33 16 23 C -0.07 -4.40 5.49 84.86 0.47 -3.93 16 24 N -0.95 -60.60 10.09 21.65 0.22 -60.38 16 25 Si 0.98 48.71 29.55 68.60 2.03 50.74 16 26 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 29 C 0.15 7.30 5.89 86.73 0.51 7.81 16 30 H 0.26 1.56 7.80 -4.41 -0.03 1.53 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 34 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 35 H 0.11 1.89 8.13 -2.38 -0.02 1.87 16 36 H 0.12 1.75 7.43 -2.39 -0.02 1.73 16 37 H 0.11 0.97 5.97 -2.38 -0.01 0.96 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.68 7.12 -2.39 -0.02 1.66 16 45 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 46 H 0.06 2.47 7.81 -2.38 -0.02 2.45 16 47 H 0.07 4.33 5.87 -2.39 -0.01 4.32 16 48 H -0.03 -1.60 8.14 -2.39 -0.02 -1.62 16 49 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 50 H 0.00 -0.20 7.59 -2.39 -0.02 -0.22 16 51 H 0.04 1.95 5.62 -4.92 -0.03 1.92 16 Total: -1.00 -81.18 394.07 3.97 -77.22 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.85 Total: 14.16 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 7.14 Total: 5.14 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -4.49 Total: -115.90 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -1.56 Total: -31.35 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.03 Total: 50.74 kcal Total: -81.18 3.97 -77.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269555426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.430 kcal (2) G-P(sol) polarization free energy of solvation -81.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds