Wall clock time and date at job start Tue Mar 31 2020 19:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47506 * 2 1 4 4 O 1.42901 * 109.46688 * 120.00340 * 2 1 3 5 5 C 1.35656 * 116.99790 * 155.31000 * 4 2 1 6 6 C 1.38702 * 120.15065 * 5.63239 * 5 4 2 7 7 C 1.38064 * 120.08595 * 179.97438 * 6 5 4 8 8 C 1.38548 * 120.38554 * 0.02562 * 7 6 5 9 9 C 1.37785 * 120.30326 * 359.97326 * 8 7 6 10 10 C 1.39705 * 119.90746 * 0.02862 * 9 8 7 11 11 C 1.47534 * 120.19300 * 179.97438 * 10 9 8 12 12 O 1.21587 * 120.00569 * 136.13491 * 11 10 9 13 13 N 1.34777 * 119.99646 * 316.13591 * 11 10 9 14 14 C 1.46497 * 120.00033 * 355.00057 * 13 11 10 15 15 C 1.46501 * 120.00058 * 175.00083 * 13 11 10 16 16 C 1.53005 * 109.47116 * 89.99780 * 15 13 11 17 17 C 1.52999 * 109.47184 * 180.02562 * 16 15 13 18 18 N 1.46505 * 109.47004 * 180.02562 * 17 16 15 19 19 C 1.46500 * 119.99579 * 90.00057 * 18 17 16 20 20 C 1.36928 * 119.99741 * 269.99996 * 18 17 16 21 21 H 1.07995 * 120.00465 * 20.96451 * 20 18 17 22 22 C 1.38820 * 119.99695 * 200.96021 * 20 18 17 23 23 N 1.31616 * 119.99737 * 11.95131 * 22 20 18 24 24 Si 1.86799 * 120.00008 * 191.94435 * 22 20 18 25 25 H 1.48507 * 109.47290 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46955 * 120.00408 * 24 22 20 27 27 H 1.48500 * 109.47385 * 240.00276 * 24 22 20 28 28 H 1.08996 * 109.47062 * 300.00433 * 1 2 3 29 29 H 1.09006 * 109.46794 * 59.99882 * 1 2 3 30 30 H 1.08998 * 109.47437 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46614 * 239.99598 * 2 1 3 32 32 H 1.09002 * 109.46651 * 59.99838 * 3 2 1 33 33 H 1.08999 * 109.46993 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46820 * 300.00294 * 3 2 1 35 35 H 1.08002 * 119.95834 * 359.96089 * 6 5 4 36 36 H 1.07993 * 119.80321 * 180.02562 * 7 6 5 37 37 H 1.08007 * 119.84554 * 180.02562 * 8 7 6 38 38 H 1.07998 * 120.04391 * 179.74597 * 9 8 7 39 39 H 1.08999 * 109.47481 * 87.85469 * 14 13 11 40 40 H 1.09002 * 109.47438 * 207.85055 * 14 13 11 41 41 H 1.08999 * 109.47416 * 327.85072 * 14 13 11 42 42 H 1.08997 * 109.47217 * 209.99432 * 15 13 11 43 43 H 1.09004 * 109.47268 * 330.00155 * 15 13 11 44 44 H 1.09001 * 109.47185 * 300.00226 * 16 15 13 45 45 H 1.09004 * 109.46746 * 60.00055 * 16 15 13 46 46 H 1.09001 * 109.47236 * 300.00184 * 17 16 15 47 47 H 1.09000 * 109.46810 * 60.00130 * 17 16 15 48 48 H 1.08995 * 109.46978 * 93.92999 * 19 18 17 49 49 H 1.09002 * 109.46790 * 213.92453 * 19 18 17 50 50 H 1.08995 * 109.47665 * 333.92341 * 19 18 17 51 51 H 0.97005 * 119.99762 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2469 -1.2183 1.1002 6 6 4.0402 -1.0097 -0.0184 7 6 5.3029 -1.5641 -0.0845 8 6 5.7869 -2.3318 0.9624 9 6 5.0125 -2.5492 2.0811 10 6 3.7330 -1.9942 2.1611 11 6 2.8982 -2.2234 3.3558 12 8 2.2787 -1.3017 3.8507 13 7 2.8222 -3.4548 3.8985 14 6 3.4791 -4.5870 3.2408 15 6 2.0828 -3.6609 5.1463 16 6 0.6236 -3.9913 4.8258 17 6 -0.1488 -4.2060 6.1289 18 7 -1.5459 -4.5230 5.8219 19 6 -1.9567 -5.9167 5.6353 20 6 -2.4674 -3.5165 5.7094 21 1 -2.1422 -2.5066 5.5078 22 6 -3.8198 -3.7943 5.8544 23 7 -4.2049 -4.9603 6.3280 24 14 -5.0928 -2.5132 5.3774 25 1 -4.4061 -1.2959 4.8752 26 1 -5.9710 -3.0606 4.3123 27 1 -5.9134 -2.1647 6.5650 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 3.6696 -0.4130 -0.8387 36 1 5.9168 -1.3984 -0.9574 37 1 6.7762 -2.7610 0.9016 38 1 5.3924 -3.1517 2.8929 39 1 4.5100 -4.6603 3.5871 40 1 2.9478 -5.5070 3.4844 41 1 3.4684 -4.4363 2.1613 42 1 2.5288 -4.4865 5.7008 43 1 2.1259 -2.7534 5.7485 44 1 0.1775 -3.1658 4.2712 45 1 0.5804 -4.8989 4.2236 46 1 0.2971 -5.0314 6.6839 47 1 -0.1056 -3.2982 6.7306 48 1 -2.3281 -6.3155 6.5793 49 1 -2.7457 -5.9655 4.8848 50 1 -1.1022 -6.5061 5.3030 51 1 -5.1499 -5.1543 6.4296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273583968.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:34 Heat of formation + Delta-G solvation = -20.121873 kcal Electronic energy + Delta-G solvation = -29548.794141 eV Core-core repulsion = 25642.726862 eV Total energy + Delta-G solvation = -3906.067278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.85844 -39.31703 -37.69999 -36.13640 -35.18827 -33.43010 -32.53340 -31.29530 -30.11460 -29.75657 -27.47137 -26.92102 -25.90435 -25.45683 -23.76325 -23.26847 -21.86156 -21.03151 -20.12167 -19.67651 -18.21803 -17.23622 -16.62106 -16.40692 -15.93299 -15.53103 -15.37847 -15.02831 -14.85987 -14.64163 -14.10394 -14.04411 -13.61268 -13.50615 -13.20055 -13.12487 -12.82832 -12.74757 -12.58117 -12.47699 -12.45098 -12.22295 -12.04620 -12.01792 -11.60517 -11.46991 -11.17066 -11.03095 -10.89121 -10.84268 -10.73356 -10.62998 -10.32901 -10.04015 -9.75926 -9.66421 -9.61138 -9.21788 -8.56197 -8.42505 -8.34719 -6.62938 -5.60980 -3.04605 0.77635 1.15842 2.84580 2.97359 3.12456 3.45499 3.52286 3.56621 3.59953 4.38773 4.52253 4.52696 4.61071 4.65116 4.70673 4.83686 4.92637 5.02761 5.12462 5.19117 5.30686 5.33247 5.40197 5.46820 5.51736 5.56196 5.59525 5.60533 5.62326 5.66041 5.88038 5.89810 5.94619 6.00563 6.06889 6.14927 6.16485 6.21376 6.29236 6.45824 6.57014 6.77795 6.84968 6.96812 7.17602 7.24637 7.51584 7.53758 7.82256 7.94272 8.37833 8.51793 9.36911 10.00624 10.48460 11.44642 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.003232 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.950201 B = 8660.590493 C =10547.054778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 C -0.180 4.180 4 O -0.285 6.285 5 C 0.183 3.817 6 C -0.221 4.221 7 C -0.061 4.061 8 C -0.169 4.169 9 C -0.051 4.051 10 C -0.164 4.164 11 C 0.561 3.439 12 O -0.515 6.515 13 N -0.613 5.613 14 C 0.079 3.921 15 C 0.119 3.881 16 C -0.150 4.150 17 C 0.156 3.844 18 N -0.605 5.605 19 C 0.166 3.834 20 C -0.246 4.246 21 H 0.069 0.931 22 C -0.004 4.004 23 N -0.913 5.913 24 Si 0.902 3.098 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.034 0.966 47 H 0.047 0.953 48 H 0.026 0.974 49 H 0.045 0.955 50 H -0.007 1.007 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.271 4.692 -15.592 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.019 3.981 3 C -0.237 4.237 4 O -0.197 6.197 5 C 0.135 3.865 6 C -0.240 4.240 7 C -0.079 4.079 8 C -0.188 4.188 9 C -0.069 4.069 10 C -0.167 4.167 11 C 0.349 3.651 12 O -0.390 6.390 13 N -0.346 5.346 14 C -0.064 4.064 15 C -0.003 4.003 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.327 5.327 19 C 0.021 3.979 20 C -0.375 4.375 21 H 0.087 0.913 22 C -0.201 4.201 23 N -0.559 5.559 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.044 0.956 49 H 0.063 0.937 50 H 0.012 0.988 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 21.578 5.128 -15.113 26.838 hybrid contribution -0.643 0.568 -0.619 1.059 sum 20.934 5.697 -15.732 26.799 Atomic orbital electron populations 1.21863 0.91936 1.03713 1.03281 1.22540 0.96038 0.92630 0.86914 1.22393 1.01858 0.96019 1.03464 1.86341 1.28053 1.66922 1.38353 1.18979 0.84813 0.89968 0.92708 1.21276 0.96475 1.07183 0.99037 1.21076 0.94422 0.94281 0.98103 1.20957 1.00753 1.02592 0.94469 1.21261 0.91784 0.96010 0.97846 1.19326 0.96885 1.04612 0.95918 1.18025 0.81067 0.82741 0.83306 1.90829 1.43996 1.42340 1.61796 1.47813 1.53435 1.07502 1.25881 1.21885 0.96958 0.89607 0.97997 1.21578 0.92489 1.01879 0.84355 1.22597 0.93272 1.01489 1.01812 1.20625 0.85486 0.98275 0.92821 1.43912 1.03178 1.03485 1.82168 1.20765 0.94317 0.83127 0.99661 1.19306 0.86887 0.89993 1.41344 0.91285 1.24972 0.97538 0.97173 1.00377 1.70097 1.14437 1.22298 1.49115 0.86193 0.81715 0.81064 0.77747 1.20272 1.21751 1.21787 0.90926 0.90515 0.91363 0.91020 0.90995 0.91978 0.90964 0.84794 0.85550 0.85418 0.84666 0.92821 0.90761 0.91268 0.90955 0.90151 0.91620 0.93034 0.94797 0.93483 0.95559 0.93672 0.98812 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.56 37.16 0.36 -1.26 16 2 C 0.07 0.80 2.85 -26.73 -0.08 0.73 16 3 C -0.18 -1.62 9.16 37.16 0.34 -1.28 16 4 O -0.28 -4.26 8.69 -32.28 -0.28 -4.54 16 5 C 0.18 2.43 6.58 -38.70 -0.25 2.18 16 6 C -0.22 -2.16 8.22 -39.47 -0.32 -2.49 16 7 C -0.06 -0.48 10.03 -39.53 -0.40 -0.88 16 8 C -0.17 -1.35 10.02 -39.63 -0.40 -1.75 16 9 C -0.05 -0.50 7.91 -39.20 -0.31 -0.81 16 10 C -0.16 -2.21 4.89 -104.85 -0.51 -2.72 16 11 C 0.56 9.35 7.03 -12.47 -0.09 9.26 16 12 O -0.51 -10.82 15.94 -8.32 -0.13 -10.96 16 13 N -0.61 -8.83 2.87 -182.81 -0.53 -9.35 16 14 C 0.08 0.80 8.99 59.85 0.54 1.33 16 15 C 0.12 1.86 5.36 -4.04 -0.02 1.84 16 16 C -0.15 -2.91 5.86 -26.73 -0.16 -3.06 16 17 C 0.16 3.40 5.65 -4.04 -0.02 3.38 16 18 N -0.60 -16.22 2.93 -181.12 -0.53 -16.75 16 19 C 0.17 4.31 8.96 59.85 0.54 4.84 16 20 C -0.25 -7.22 9.68 -15.06 -0.15 -7.36 16 21 H 0.07 2.03 7.86 -52.49 -0.41 1.62 16 22 C 0.00 -0.10 5.12 -17.43 -0.09 -0.19 16 23 N -0.91 -27.79 10.54 55.49 0.58 -27.21 16 24 Si 0.90 23.07 29.57 -169.99 -5.03 18.04 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.63 6.34 -51.93 -0.33 0.30 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.54 6.87 -51.93 -0.36 0.18 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.13 1.05 5.41 -52.49 -0.28 0.76 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.14 1.08 6.18 -52.49 -0.32 0.75 16 39 H 0.05 0.40 6.86 -51.93 -0.36 0.05 16 40 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 41 H 0.07 0.67 6.54 -51.93 -0.34 0.34 16 42 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 43 H 0.08 1.36 7.50 -51.93 -0.39 0.97 16 44 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 47 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 48 H 0.03 0.73 7.47 -51.93 -0.39 0.34 16 49 H 0.04 1.26 7.09 -51.93 -0.37 0.89 16 50 H -0.01 -0.15 8.04 -51.93 -0.42 -0.57 16 51 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 407.55 15.07 6.14 6.14 Total: -1.00 -36.26 407.55 -9.37 -45.63 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -8.58 Total: -2.78 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.02 Total: 1.76 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.47 Total: -53.31 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.41 Total: -15.49 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.03 Total: 18.04 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.26 -9.37 -45.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273583968.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.512 kcal (2) G-P(sol) polarization free energy of solvation -36.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds