Wall clock time and date at job start Tue Mar 31 2020 19:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47506 * 2 1 4 4 O 1.42901 * 109.46688 * 120.00340 * 2 1 3 5 5 C 1.35656 * 116.99790 * 155.31000 * 4 2 1 6 6 C 1.38702 * 120.15065 * 5.63239 * 5 4 2 7 7 C 1.38064 * 120.08595 * 179.97438 * 6 5 4 8 8 C 1.38548 * 120.38554 * 0.02562 * 7 6 5 9 9 C 1.37785 * 120.30326 * 359.97326 * 8 7 6 10 10 C 1.39705 * 119.90746 * 0.02862 * 9 8 7 11 11 C 1.47534 * 120.19300 * 179.97438 * 10 9 8 12 12 O 1.21587 * 120.00569 * 136.13491 * 11 10 9 13 13 N 1.34777 * 119.99646 * 316.13591 * 11 10 9 14 14 C 1.46497 * 120.00033 * 355.00057 * 13 11 10 15 15 C 1.46501 * 120.00058 * 175.00083 * 13 11 10 16 16 C 1.53005 * 109.47116 * 89.99780 * 15 13 11 17 17 C 1.52999 * 109.47184 * 180.02562 * 16 15 13 18 18 N 1.46505 * 109.47004 * 180.02562 * 17 16 15 19 19 C 1.46500 * 119.99579 * 90.00057 * 18 17 16 20 20 C 1.36928 * 119.99741 * 269.99996 * 18 17 16 21 21 H 1.07995 * 120.00465 * 20.96451 * 20 18 17 22 22 C 1.38820 * 119.99695 * 200.96021 * 20 18 17 23 23 N 1.31616 * 119.99737 * 11.95131 * 22 20 18 24 24 Si 1.86799 * 120.00008 * 191.94435 * 22 20 18 25 25 H 1.48507 * 109.47290 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46955 * 120.00408 * 24 22 20 27 27 H 1.48500 * 109.47385 * 240.00276 * 24 22 20 28 28 H 1.08996 * 109.47062 * 300.00433 * 1 2 3 29 29 H 1.09006 * 109.46794 * 59.99882 * 1 2 3 30 30 H 1.08998 * 109.47437 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46614 * 239.99598 * 2 1 3 32 32 H 1.09002 * 109.46651 * 59.99838 * 3 2 1 33 33 H 1.08999 * 109.46993 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46820 * 300.00294 * 3 2 1 35 35 H 1.08002 * 119.95834 * 359.96089 * 6 5 4 36 36 H 1.07993 * 119.80321 * 180.02562 * 7 6 5 37 37 H 1.08007 * 119.84554 * 180.02562 * 8 7 6 38 38 H 1.07998 * 120.04391 * 179.74597 * 9 8 7 39 39 H 1.08999 * 109.47481 * 87.85469 * 14 13 11 40 40 H 1.09002 * 109.47438 * 207.85055 * 14 13 11 41 41 H 1.08999 * 109.47416 * 327.85072 * 14 13 11 42 42 H 1.08997 * 109.47217 * 209.99432 * 15 13 11 43 43 H 1.09004 * 109.47268 * 330.00155 * 15 13 11 44 44 H 1.09001 * 109.47185 * 300.00226 * 16 15 13 45 45 H 1.09004 * 109.46746 * 60.00055 * 16 15 13 46 46 H 1.09001 * 109.47236 * 300.00184 * 17 16 15 47 47 H 1.09000 * 109.46810 * 60.00130 * 17 16 15 48 48 H 1.08995 * 109.46978 * 93.92999 * 19 18 17 49 49 H 1.09002 * 109.46790 * 213.92453 * 19 18 17 50 50 H 1.08995 * 109.47665 * 333.92341 * 19 18 17 51 51 H 0.97005 * 119.99762 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2469 -1.2183 1.1002 6 6 4.0402 -1.0097 -0.0184 7 6 5.3029 -1.5641 -0.0845 8 6 5.7869 -2.3318 0.9624 9 6 5.0125 -2.5492 2.0811 10 6 3.7330 -1.9942 2.1611 11 6 2.8982 -2.2234 3.3558 12 8 2.2787 -1.3017 3.8507 13 7 2.8222 -3.4548 3.8985 14 6 3.4791 -4.5870 3.2408 15 6 2.0828 -3.6609 5.1463 16 6 0.6236 -3.9913 4.8258 17 6 -0.1488 -4.2060 6.1289 18 7 -1.5459 -4.5230 5.8219 19 6 -1.9567 -5.9167 5.6353 20 6 -2.4674 -3.5165 5.7094 21 1 -2.1422 -2.5066 5.5078 22 6 -3.8198 -3.7943 5.8544 23 7 -4.2049 -4.9603 6.3280 24 14 -5.0928 -2.5132 5.3774 25 1 -4.4061 -1.2959 4.8752 26 1 -5.9710 -3.0606 4.3123 27 1 -5.9134 -2.1647 6.5650 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 3.6696 -0.4130 -0.8387 36 1 5.9168 -1.3984 -0.9574 37 1 6.7762 -2.7610 0.9016 38 1 5.3924 -3.1517 2.8929 39 1 4.5100 -4.6603 3.5871 40 1 2.9478 -5.5070 3.4844 41 1 3.4684 -4.4363 2.1613 42 1 2.5288 -4.4865 5.7008 43 1 2.1259 -2.7534 5.7485 44 1 0.1775 -3.1658 4.2712 45 1 0.5804 -4.8989 4.2236 46 1 0.2971 -5.0314 6.6839 47 1 -0.1056 -3.2982 6.7306 48 1 -2.3281 -6.3155 6.5793 49 1 -2.7457 -5.9655 4.8848 50 1 -1.1022 -6.5061 5.3030 51 1 -5.1499 -5.1543 6.4296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273583968.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:33 Heat of formation + Delta-G solvation = -41.806704 kcal Electronic energy + Delta-G solvation = -29549.734465 eV Core-core repulsion = 25642.726862 eV Total energy + Delta-G solvation = -3907.007603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77293 -40.41401 -38.53145 -37.92296 -36.68381 -34.28082 -34.19202 -32.64370 -31.42195 -30.77087 -28.27187 -28.11720 -27.88573 -27.00390 -24.78320 -24.34844 -23.26104 -21.99510 -21.80312 -20.73225 -19.11536 -18.78903 -18.19056 -17.52989 -17.07822 -16.76094 -16.40239 -16.20990 -16.02559 -15.81292 -15.61640 -15.29118 -14.95990 -14.68254 -14.50462 -14.40462 -14.22927 -14.02803 -13.66587 -13.41968 -13.37095 -13.26131 -13.04479 -12.96782 -12.83432 -12.78526 -12.72985 -12.57843 -12.52064 -12.26784 -12.19013 -12.09813 -11.90651 -11.83969 -11.68483 -11.45804 -10.87458 -10.68190 -9.99055 -9.68795 -9.20985 -8.79712 -7.86959 -5.33434 -0.00688 0.42739 1.39720 1.40069 1.52491 1.72479 2.07670 2.19318 2.47154 2.78817 3.25297 3.52753 3.68201 3.71910 3.81809 3.87997 4.01379 4.04350 4.11731 4.23718 4.28337 4.32921 4.42243 4.49164 4.51861 4.59384 4.59976 4.68158 4.72932 4.73329 4.74238 4.82535 4.83923 4.87433 4.91116 4.94249 5.10314 5.17775 5.22360 5.25825 5.28778 5.35634 5.48702 5.49084 5.57355 5.61861 5.69518 5.81925 6.29658 6.35207 6.49813 7.12915 7.19152 7.86065 8.26592 9.16325 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.003232 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.950201 B = 8660.590493 C =10547.054778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.067 3.933 3 C -0.173 4.173 4 O -0.328 6.328 5 C 0.153 3.847 6 C -0.222 4.222 7 C -0.050 4.050 8 C -0.160 4.160 9 C -0.047 4.047 10 C -0.196 4.196 11 C 0.552 3.448 12 O -0.579 6.579 13 N -0.612 5.612 14 C 0.073 3.927 15 C 0.127 3.873 16 C -0.129 4.129 17 C 0.154 3.846 18 N -0.624 5.624 19 C 0.180 3.820 20 C -0.262 4.262 21 H 0.055 0.945 22 C -0.053 4.053 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.277 1.277 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.046 0.954 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.152 0.848 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.114 0.886 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.033 0.967 48 H 0.005 0.995 49 H 0.016 0.984 50 H 0.033 0.967 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.564 3.880 -17.817 31.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.012 3.988 3 C -0.230 4.230 4 O -0.242 6.242 5 C 0.106 3.894 6 C -0.241 4.241 7 C -0.068 4.068 8 C -0.177 4.177 9 C -0.065 4.065 10 C -0.200 4.200 11 C 0.342 3.658 12 O -0.459 6.459 13 N -0.344 5.344 14 C -0.069 4.069 15 C 0.004 3.996 16 C -0.170 4.170 17 C 0.028 3.972 18 N -0.347 5.347 19 C 0.035 3.965 20 C -0.392 4.392 21 H 0.073 0.927 22 C -0.247 4.247 23 N -0.584 5.584 24 Si 0.794 3.206 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.169 0.831 36 H 0.182 0.818 37 H 0.183 0.817 38 H 0.171 0.829 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.132 0.868 43 H 0.078 0.922 44 H 0.035 0.965 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.052 0.948 48 H 0.023 0.977 49 H 0.035 0.965 50 H 0.051 0.949 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 24.927 4.277 -17.355 30.673 hybrid contribution -1.558 0.785 0.027 1.745 sum 23.369 5.063 -17.328 29.529 Atomic orbital electron populations 1.21908 0.92686 1.02620 1.03587 1.22779 0.95603 0.93605 0.86795 1.22349 1.02110 0.94908 1.03654 1.86297 1.29541 1.67874 1.40488 1.19372 0.84942 0.90892 0.94209 1.21518 0.96947 1.07366 0.98237 1.21583 0.93625 0.92460 0.99162 1.21410 1.01717 1.01414 0.93206 1.21492 0.90256 0.95600 0.99194 1.19342 0.98288 1.07239 0.95108 1.18720 0.80645 0.82571 0.83841 1.90778 1.46893 1.44416 1.63790 1.47916 1.52790 1.08240 1.25408 1.22186 0.98597 0.87987 0.98081 1.21412 0.90517 1.02380 0.85295 1.22279 0.95316 0.99675 0.99712 1.20791 0.83597 0.98772 0.94073 1.44177 1.04713 1.03292 1.82561 1.20535 0.94952 0.83244 0.97765 1.19455 0.88048 0.90259 1.41487 0.92669 1.25702 0.99170 0.99266 1.00585 1.70235 1.14659 1.23718 1.49817 0.85226 0.79152 0.78731 0.77521 1.20185 1.21102 1.21125 0.93509 0.87223 0.93113 0.88719 0.93345 0.91448 0.88112 0.83075 0.81811 0.81747 0.82865 0.89253 0.89852 0.90933 0.86798 0.92187 0.96503 0.92437 0.91668 0.94825 0.97662 0.96500 0.94895 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.56 71.98 0.69 -2.76 16 2 C 0.07 1.48 2.85 30.60 0.09 1.57 16 3 C -0.17 -3.09 9.16 71.98 0.66 -2.43 16 4 O -0.33 -10.53 8.69 -76.70 -0.67 -11.20 16 5 C 0.15 4.11 6.58 22.84 0.15 4.26 16 6 C -0.22 -3.89 8.22 22.34 0.18 -3.70 16 7 C -0.05 -0.59 10.03 22.30 0.22 -0.37 16 8 C -0.16 -1.84 10.02 22.24 0.22 -1.61 16 9 C -0.05 -0.81 7.91 22.52 0.18 -0.63 16 10 C -0.20 -5.31 4.89 -20.01 -0.10 -5.40 16 11 C 0.55 19.27 7.03 86.69 0.61 19.88 16 12 O -0.58 -26.55 15.94 9.03 0.14 -26.40 16 13 N -0.61 -17.49 2.87 -850.55 -2.44 -19.94 16 14 C 0.07 1.29 8.99 127.77 1.15 2.44 16 15 C 0.13 3.94 5.36 86.38 0.46 4.41 16 16 C -0.13 -5.10 5.86 30.60 0.18 -4.92 16 17 C 0.15 6.81 5.65 86.38 0.49 7.30 16 18 N -0.62 -34.23 2.93 -726.94 -2.13 -36.36 16 19 C 0.18 9.42 8.96 127.77 1.15 10.56 16 20 C -0.26 -15.97 9.68 84.04 0.81 -15.16 16 21 H 0.06 3.44 7.86 -2.91 -0.02 3.41 16 22 C -0.05 -3.17 5.12 84.86 0.43 -2.74 16 23 N -0.94 -58.23 10.54 21.65 0.23 -58.00 16 24 Si 0.97 48.74 29.57 68.60 2.03 50.77 16 25 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 28 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.57 6.34 -2.39 -0.02 1.55 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.11 6.87 -2.39 -0.02 1.10 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.15 1.98 5.41 -2.91 -0.02 1.96 16 36 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 37 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.15 1.91 6.18 -2.91 -0.02 1.89 16 39 H 0.09 0.97 6.86 -2.39 -0.02 0.96 16 40 H 0.08 1.34 8.06 -2.39 -0.02 1.33 16 41 H 0.07 1.27 6.54 -2.39 -0.02 1.25 16 42 H 0.11 2.61 8.07 -2.39 -0.02 2.59 16 43 H 0.06 2.12 7.50 -2.38 -0.02 2.10 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 46 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 47 H 0.03 1.55 8.04 -2.39 -0.02 1.53 16 48 H 0.01 0.29 7.47 -2.39 -0.02 0.27 16 49 H 0.02 0.94 7.09 -2.39 -0.02 0.92 16 50 H 0.03 1.43 8.04 -2.39 -0.02 1.41 16 51 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 Total: -1.00 -86.20 407.55 5.64 -80.57 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.90 Total: 9.87 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 7.58 Total: 10.70 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -4.34 Total: -114.30 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.52 Total: -37.60 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.77 kcal Total: -86.20 5.64 -80.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273583968.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.758 kcal (2) G-P(sol) polarization free energy of solvation -86.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds