Wall clock time and date at job start Tue Mar 31 2020 19:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47007 * 85.31053 * 3 2 1 5 5 C 1.42900 * 114.00042 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47381 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47233 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99779 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99993 * 179.97438 * 7 6 5 10 10 C 1.46932 * 120.63814 * 359.72443 * 9 7 6 11 11 C 1.52757 * 109.01439 * 233.60530 * 10 9 7 12 12 C 1.53034 * 109.40523 * 305.60568 * 11 10 9 13 13 C 1.53047 * 109.43802 * 181.11402 * 12 11 10 14 14 C 1.53189 * 109.32610 * 58.68576 * 13 12 11 15 15 N 1.46928 * 108.77008 * 54.64778 * 14 13 12 16 16 C 1.36942 * 120.64156 * 126.33402 * 15 14 13 17 17 H 1.07989 * 119.99742 * 331.85775 * 16 15 14 18 18 C 1.38814 * 119.99931 * 151.85991 * 16 15 14 19 19 N 1.31624 * 120.00193 * 343.07325 * 18 16 15 20 20 Si 1.86791 * 120.00013 * 163.07361 * 18 16 15 21 21 H 1.48496 * 109.47524 * 59.99732 * 20 18 16 22 22 H 1.48496 * 109.47242 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47201 * 299.99789 * 20 18 16 24 24 C 1.46925 * 118.71882 * 306.35257 * 15 14 13 25 25 C 1.53027 * 109.45611 * 301.18150 * 12 11 10 26 26 C 1.53048 * 109.54748 * 61.17817 * 12 11 10 27 27 C 1.46923 * 120.64100 * 179.97438 * 9 7 6 28 28 H 4.38445 * 5.44511 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47467 * 325.31320 * 3 2 1 30 30 H 1.08993 * 109.47117 * 205.31257 * 3 2 1 31 31 H 1.09005 * 109.46956 * 300.00260 * 5 4 3 32 32 H 1.08995 * 109.47186 * 60.00309 * 5 4 3 33 33 H 1.08997 * 109.46718 * 300.00418 * 6 5 4 34 34 H 1.09001 * 109.46927 * 59.99495 * 6 5 4 35 35 H 1.08992 * 109.58988 * 353.44729 * 10 9 7 36 36 H 1.09010 * 109.58529 * 113.86874 * 10 9 7 37 37 H 1.08998 * 109.56585 * 185.55952 * 11 10 9 38 38 H 1.09004 * 109.35651 * 65.51924 * 11 10 9 39 39 H 1.08997 * 109.49555 * 178.64282 * 13 12 11 40 40 H 1.09001 * 109.49469 * 298.73487 * 13 12 11 41 41 H 1.08999 * 109.59111 * 294.85586 * 14 13 12 42 42 H 1.09000 * 109.70043 * 174.49479 * 14 13 12 43 43 H 0.96997 * 120.00510 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.58727 * 293.83938 * 24 15 14 45 45 H 1.09003 * 109.70127 * 173.48456 * 24 15 14 46 46 H 1.08997 * 109.49809 * 61.26470 * 25 12 11 47 47 H 1.09002 * 109.48982 * 181.35112 * 25 12 11 48 48 H 1.09000 * 109.49504 * 178.72463 * 26 12 11 49 49 H 1.08997 * 109.49560 * 58.63317 * 26 12 11 50 50 H 1.08997 * 109.58668 * 246.11755 * 27 9 7 51 51 H 1.09000 * 109.59066 * 6.40948 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1224 -0.1093 -1.3428 5 6 4.5469 -0.1173 -1.4553 6 6 4.9415 -0.2374 -2.9287 7 6 6.4438 -0.2452 -3.0474 8 8 7.1311 -0.1633 -2.0516 9 7 7.0234 -0.3442 -4.2601 10 6 6.2042 -0.4514 -5.4751 11 6 6.6446 -1.6823 -6.2654 12 6 8.1505 -1.6065 -6.5270 13 6 8.5877 -2.8255 -7.3426 14 6 7.8114 -2.8570 -8.6629 15 7 7.9973 -1.5725 -9.3514 16 6 8.4470 -1.5322 -10.6443 17 1 9.0796 -2.3223 -11.0207 18 6 8.0897 -0.4758 -11.4708 19 7 7.0761 0.2992 -11.1475 20 14 9.0473 -0.1539 -13.0420 21 1 8.9638 -1.3446 -13.9253 22 1 8.4710 1.0228 -13.7407 23 1 10.4690 0.1164 -12.7086 24 6 7.6918 -0.3319 -8.6259 25 6 8.4689 -0.3283 -7.3058 26 6 8.9017 -1.5910 -5.1937 27 6 8.4867 -0.3526 -4.3922 28 1 -1.0500 0.0002 -0.0001 29 1 3.0098 -0.8442 0.5848 30 1 3.0089 0.9298 0.4394 31 1 4.9489 0.8097 -1.0463 32 1 4.9504 -0.9643 -0.9006 33 1 4.5394 -1.1641 -3.3381 34 1 4.5379 0.6099 -3.4831 35 1 5.1543 -0.5517 -5.2003 36 1 6.3401 0.4403 -6.0873 37 1 6.1116 -1.7159 -7.2156 38 1 6.4202 -2.5804 -5.6899 39 1 9.6558 -2.7603 -7.5501 40 1 8.3813 -3.7344 -6.7775 41 1 6.7519 -3.0131 -8.4602 42 1 8.1865 -3.6655 -9.2904 43 1 6.8262 1.0372 -11.7252 44 1 6.6225 -0.2826 -8.4206 45 1 7.9885 0.5278 -9.2269 46 1 8.1777 0.5399 -6.7146 47 1 9.5381 -0.2857 -7.5133 48 1 9.9750 -1.5599 -5.3812 49 1 8.6568 -2.4897 -4.6277 50 1 8.8116 0.5470 -4.9149 51 1 8.9428 -0.3853 -3.4028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281789792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:18 Heat of formation + Delta-G solvation = -7.783435 kcal Electronic energy + Delta-G solvation = -29548.643350 eV Core-core repulsion = 25643.111107 eV Total energy + Delta-G solvation = -3905.532244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.61897 -39.01579 -38.19515 -35.92141 -33.84699 -33.60811 -32.18676 -31.09485 -30.73538 -29.91667 -28.11946 -27.26932 -25.26110 -23.96094 -23.41706 -22.72584 -21.95019 -20.54149 -19.31290 -18.71021 -17.89084 -17.47822 -16.75732 -16.56063 -16.21094 -15.76692 -15.42914 -15.12751 -14.89932 -14.22545 -14.18221 -14.09105 -13.97703 -13.42822 -13.41334 -13.24772 -13.02457 -12.79460 -12.62500 -12.22863 -11.94308 -11.71140 -11.54365 -11.49482 -11.44744 -11.10169 -11.02798 -10.88145 -10.78270 -10.71282 -10.57084 -10.37974 -10.13405 -10.09303 -9.89400 -9.82847 -9.71040 -9.54930 -9.35968 -8.54559 -8.41986 -6.64644 -5.79657 -3.21325 2.10941 2.44945 2.54923 2.92111 3.37353 3.43309 3.44592 3.60162 4.16002 4.48249 4.49332 4.76087 4.78954 4.87127 4.92650 5.01880 5.04742 5.09369 5.20543 5.26600 5.36328 5.40993 5.44185 5.50595 5.53959 5.56275 5.57728 5.71062 5.81588 5.90246 5.93054 5.98194 6.11537 6.12933 6.21492 6.30597 6.36857 6.53105 6.57310 6.62977 6.75400 6.76618 6.81311 6.90080 6.98959 7.20586 7.35787 7.39908 7.65863 7.79099 8.09028 8.45166 9.21657 9.85166 10.41915 11.28640 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.002313 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.420274 B =12100.005197 C =12908.734741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.193 4.193 3 C 0.174 3.826 4 O -0.386 6.386 5 C 0.079 3.921 6 C -0.140 4.140 7 C 0.520 3.480 8 O -0.554 6.554 9 N -0.602 5.602 10 C 0.103 3.897 11 C -0.125 4.125 12 C -0.047 4.047 13 C -0.121 4.121 14 C 0.145 3.855 15 N -0.591 5.591 16 C -0.251 4.251 17 H 0.063 0.937 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.172 3.828 25 C -0.134 4.134 26 C -0.123 4.123 27 C 0.111 3.889 28 H 0.222 0.778 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.019 0.981 42 H 0.050 0.950 43 H 0.254 0.746 44 H 0.019 0.981 45 H 0.084 0.916 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.071 0.929 49 H 0.059 0.941 50 H 0.071 0.929 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.090 -1.076 19.612 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.193 4.193 3 C 0.099 3.901 4 O -0.305 6.305 5 C 0.003 3.997 6 C -0.180 4.180 7 C 0.308 3.692 8 O -0.433 6.433 9 N -0.335 5.335 10 C -0.020 4.020 11 C -0.163 4.163 12 C -0.047 4.047 13 C -0.161 4.161 14 C 0.018 3.982 15 N -0.313 5.313 16 C -0.381 4.381 17 H 0.081 0.919 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.046 3.954 25 C -0.173 4.173 26 C -0.161 4.161 27 C -0.011 4.011 28 H 0.239 0.761 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.102 0.898 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.904 -0.902 19.846 20.725 hybrid contribution 0.413 0.196 -0.796 0.918 sum -5.491 -0.706 19.050 19.838 Atomic orbital electron populations 1.24989 0.95911 1.00823 0.97520 1.22568 0.93925 1.00660 1.02167 1.19043 0.84627 1.01625 0.84850 1.87883 1.21789 1.95208 1.25664 1.22166 0.79646 1.01959 0.95964 1.21496 0.92947 1.05838 0.97715 1.20285 0.89922 0.76055 0.82896 1.90676 1.65350 1.51083 1.36202 1.48126 1.07494 1.71647 1.06236 1.21852 0.94418 1.00232 0.85458 1.21956 0.97063 0.96512 1.00772 1.20385 0.93799 0.97195 0.93337 1.22040 1.00740 0.95646 0.97631 1.20922 0.95934 0.89760 0.91546 1.44009 1.77291 0.99395 1.10646 1.19131 1.23240 1.08338 0.87358 0.91907 1.25019 0.96660 1.00318 0.97639 1.70008 1.25871 1.20175 1.38715 0.86392 0.79767 0.77473 0.83257 1.20941 1.21677 1.21118 1.20770 0.94862 0.90880 0.88846 1.22341 1.01320 0.94839 0.98839 1.22017 1.00449 0.97316 0.96314 1.21664 0.79265 0.98869 1.01253 0.76135 0.90673 0.90663 0.92054 0.92072 0.87848 0.87836 0.90017 0.90229 0.88991 0.92434 0.92355 0.93399 0.96367 0.93133 0.93645 0.96271 0.89821 0.93190 0.92720 0.91001 0.92193 0.91052 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 19.25 29.55 0.57 -0.84 16 2 C -0.19 -1.85 13.73 -37.12 -0.51 -2.36 16 3 C 0.17 1.48 6.41 34.37 0.22 1.70 16 4 O -0.39 -4.12 10.30 -35.23 -0.36 -4.48 16 5 C 0.08 0.79 5.23 37.16 0.19 0.98 16 6 C -0.14 -1.41 4.42 -27.88 -0.12 -1.53 16 7 C 0.52 6.65 7.70 -10.99 -0.08 6.57 16 8 O -0.55 -8.64 15.40 5.56 0.09 -8.55 16 9 N -0.60 -7.60 2.98 -173.00 -0.52 -8.11 16 10 C 0.10 1.25 5.85 -3.93 -0.02 1.23 16 11 C -0.13 -1.73 4.13 -26.84 -0.11 -1.85 16 12 C -0.05 -0.70 0.51 -154.43 -0.08 -0.78 16 13 C -0.12 -1.97 4.90 -26.61 -0.13 -2.11 16 14 C 0.14 2.86 6.05 -3.71 -0.02 2.84 16 15 N -0.59 -14.02 2.99 -172.32 -0.52 -14.54 16 16 C -0.25 -6.70 9.58 -15.06 -0.14 -6.84 16 17 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -25.45 11.19 55.49 0.62 -24.83 16 20 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.17 3.79 4.83 -3.71 -0.02 3.78 16 25 C -0.13 -2.33 4.14 -26.62 -0.11 -2.44 16 26 C -0.12 -1.60 4.90 -26.58 -0.13 -1.73 16 27 C 0.11 1.43 5.97 -3.69 -0.02 1.41 16 28 H 0.22 0.93 7.80 -54.09 -0.42 0.51 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.10 0.95 7.68 -51.93 -0.40 0.55 16 34 H 0.10 0.95 7.95 -51.93 -0.41 0.53 16 35 H 0.08 0.83 5.94 -51.93 -0.31 0.52 16 36 H 0.08 1.04 6.73 -51.92 -0.35 0.69 16 37 H 0.09 1.48 4.98 -51.93 -0.26 1.22 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.02 0.36 6.66 -51.93 -0.35 0.02 16 42 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.02 0.44 6.72 -51.93 -0.35 0.09 16 45 H 0.08 2.14 6.06 -51.93 -0.31 1.82 16 46 H 0.05 0.79 5.00 -51.93 -0.26 0.53 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.07 0.92 6.66 -51.93 -0.35 0.57 16 51 H 0.09 1.15 7.00 -51.93 -0.36 0.79 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -31.20 390.96 -8.75 -39.95 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -8.31 Total: 0.32 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.61 Total: -2.00 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.41 Total: -47.48 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.28 Total: -13.03 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.20 -8.75 -39.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281789792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.162 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds