Wall clock time and date at job start Tue Mar 31 2020 19:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47007 * 85.31053 * 3 2 1 5 5 C 1.42900 * 114.00042 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47381 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47233 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99779 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99993 * 179.97438 * 7 6 5 10 10 C 1.46932 * 120.63814 * 359.72443 * 9 7 6 11 11 C 1.52757 * 109.01439 * 233.60530 * 10 9 7 12 12 C 1.53034 * 109.40523 * 305.60568 * 11 10 9 13 13 C 1.53047 * 109.43802 * 181.11402 * 12 11 10 14 14 C 1.53189 * 109.32610 * 58.68576 * 13 12 11 15 15 N 1.46928 * 108.77008 * 54.64778 * 14 13 12 16 16 C 1.36942 * 120.64156 * 126.33402 * 15 14 13 17 17 H 1.07989 * 119.99742 * 331.85775 * 16 15 14 18 18 C 1.38814 * 119.99931 * 151.85991 * 16 15 14 19 19 N 1.31624 * 120.00193 * 343.07325 * 18 16 15 20 20 Si 1.86791 * 120.00013 * 163.07361 * 18 16 15 21 21 H 1.48496 * 109.47524 * 59.99732 * 20 18 16 22 22 H 1.48496 * 109.47242 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47201 * 299.99789 * 20 18 16 24 24 C 1.46925 * 118.71882 * 306.35257 * 15 14 13 25 25 C 1.53027 * 109.45611 * 301.18150 * 12 11 10 26 26 C 1.53048 * 109.54748 * 61.17817 * 12 11 10 27 27 C 1.46923 * 120.64100 * 179.97438 * 9 7 6 28 28 H 4.38445 * 5.44511 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47467 * 325.31320 * 3 2 1 30 30 H 1.08993 * 109.47117 * 205.31257 * 3 2 1 31 31 H 1.09005 * 109.46956 * 300.00260 * 5 4 3 32 32 H 1.08995 * 109.47186 * 60.00309 * 5 4 3 33 33 H 1.08997 * 109.46718 * 300.00418 * 6 5 4 34 34 H 1.09001 * 109.46927 * 59.99495 * 6 5 4 35 35 H 1.08992 * 109.58988 * 353.44729 * 10 9 7 36 36 H 1.09010 * 109.58529 * 113.86874 * 10 9 7 37 37 H 1.08998 * 109.56585 * 185.55952 * 11 10 9 38 38 H 1.09004 * 109.35651 * 65.51924 * 11 10 9 39 39 H 1.08997 * 109.49555 * 178.64282 * 13 12 11 40 40 H 1.09001 * 109.49469 * 298.73487 * 13 12 11 41 41 H 1.08999 * 109.59111 * 294.85586 * 14 13 12 42 42 H 1.09000 * 109.70043 * 174.49479 * 14 13 12 43 43 H 0.96997 * 120.00510 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.58727 * 293.83938 * 24 15 14 45 45 H 1.09003 * 109.70127 * 173.48456 * 24 15 14 46 46 H 1.08997 * 109.49809 * 61.26470 * 25 12 11 47 47 H 1.09002 * 109.48982 * 181.35112 * 25 12 11 48 48 H 1.09000 * 109.49504 * 178.72463 * 26 12 11 49 49 H 1.08997 * 109.49560 * 58.63317 * 26 12 11 50 50 H 1.08997 * 109.58668 * 246.11755 * 27 9 7 51 51 H 1.09000 * 109.59066 * 6.40948 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1224 -0.1093 -1.3428 5 6 4.5469 -0.1173 -1.4553 6 6 4.9415 -0.2374 -2.9287 7 6 6.4438 -0.2452 -3.0474 8 8 7.1311 -0.1633 -2.0516 9 7 7.0234 -0.3442 -4.2601 10 6 6.2042 -0.4514 -5.4751 11 6 6.6446 -1.6823 -6.2654 12 6 8.1505 -1.6065 -6.5270 13 6 8.5877 -2.8255 -7.3426 14 6 7.8114 -2.8570 -8.6629 15 7 7.9973 -1.5725 -9.3514 16 6 8.4470 -1.5322 -10.6443 17 1 9.0796 -2.3223 -11.0207 18 6 8.0897 -0.4758 -11.4708 19 7 7.0761 0.2992 -11.1475 20 14 9.0473 -0.1539 -13.0420 21 1 8.9638 -1.3446 -13.9253 22 1 8.4710 1.0228 -13.7407 23 1 10.4690 0.1164 -12.7086 24 6 7.6918 -0.3319 -8.6259 25 6 8.4689 -0.3283 -7.3058 26 6 8.9017 -1.5910 -5.1937 27 6 8.4867 -0.3526 -4.3922 28 1 -1.0500 0.0002 -0.0001 29 1 3.0098 -0.8442 0.5848 30 1 3.0089 0.9298 0.4394 31 1 4.9489 0.8097 -1.0463 32 1 4.9504 -0.9643 -0.9006 33 1 4.5394 -1.1641 -3.3381 34 1 4.5379 0.6099 -3.4831 35 1 5.1543 -0.5517 -5.2003 36 1 6.3401 0.4403 -6.0873 37 1 6.1116 -1.7159 -7.2156 38 1 6.4202 -2.5804 -5.6899 39 1 9.6558 -2.7603 -7.5501 40 1 8.3813 -3.7344 -6.7775 41 1 6.7519 -3.0131 -8.4602 42 1 8.1865 -3.6655 -9.2904 43 1 6.8262 1.0372 -11.7252 44 1 6.6225 -0.2826 -8.4206 45 1 7.9885 0.5278 -9.2269 46 1 8.1777 0.5399 -6.7146 47 1 9.5381 -0.2857 -7.5133 48 1 9.9750 -1.5599 -5.3812 49 1 8.6568 -2.4897 -4.6277 50 1 8.8116 0.5470 -4.9149 51 1 8.9428 -0.3853 -3.4028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281789792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:17 Heat of formation + Delta-G solvation = -25.234622 kcal Electronic energy + Delta-G solvation = -29549.400091 eV Core-core repulsion = 25643.111107 eV Total energy + Delta-G solvation = -3906.288984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.72879 -40.16436 -39.00684 -37.33638 -35.15972 -34.46705 -33.34760 -32.53591 -31.79036 -31.47553 -29.51700 -27.99673 -26.74047 -25.20818 -24.54833 -23.92441 -23.47243 -21.88697 -20.43861 -19.44463 -19.12434 -18.65914 -18.01758 -17.44368 -17.23073 -16.86804 -16.62490 -16.34076 -15.90166 -15.71285 -15.46541 -15.24819 -15.20041 -14.93237 -14.60548 -14.51191 -14.29366 -13.87717 -13.68539 -13.31176 -13.21226 -12.94749 -12.86096 -12.77392 -12.67049 -12.51666 -12.41623 -12.28376 -12.12780 -11.96685 -11.73671 -11.65271 -11.52939 -11.45134 -11.16521 -11.03363 -10.90696 -10.81190 -10.56658 -10.44916 -9.58623 -8.58004 -7.83589 -5.27162 1.43854 1.46957 1.49028 1.55293 1.56862 1.82519 1.99779 2.53182 2.89995 3.30068 3.50635 3.65572 3.75302 3.82234 3.84087 3.91118 4.03377 4.10980 4.19595 4.27620 4.31356 4.40109 4.44999 4.47638 4.52292 4.61696 4.67661 4.70672 4.76410 4.79141 4.81398 4.83794 4.88189 4.92361 5.03461 5.06444 5.09487 5.11140 5.19296 5.37680 5.40499 5.46198 5.48290 5.59911 5.62947 5.70941 5.90711 6.07576 6.39637 6.43951 6.60030 7.10099 7.20711 7.93893 8.43883 9.21464 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017905 B = 0.002313 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.420274 B =12100.005197 C =12908.734741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.402 6.402 5 C 0.083 3.917 6 C -0.136 4.136 7 C 0.521 3.479 8 O -0.583 6.583 9 N -0.602 5.602 10 C 0.107 3.893 11 C -0.120 4.120 12 C -0.043 4.043 13 C -0.111 4.111 14 C 0.141 3.859 15 N -0.609 5.609 16 C -0.260 4.260 17 H 0.060 0.940 18 C -0.049 4.049 19 N -0.931 5.931 20 Si 0.961 3.039 21 H -0.277 1.277 22 H -0.295 1.295 23 H -0.282 1.282 24 C 0.181 3.819 25 C -0.119 4.119 26 C -0.111 4.111 27 C 0.112 3.888 28 H 0.253 0.747 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.022 0.978 42 H 0.043 0.957 43 H 0.249 0.751 44 H 0.009 0.991 45 H 0.043 0.957 46 H 0.065 0.935 47 H 0.042 0.958 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.510 -1.822 21.112 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.322 6.322 5 C 0.006 3.994 6 C -0.175 4.175 7 C 0.311 3.689 8 O -0.464 6.464 9 N -0.334 5.334 10 C -0.015 4.015 11 C -0.158 4.158 12 C -0.043 4.043 13 C -0.150 4.150 14 C 0.016 3.984 15 N -0.332 5.332 16 C -0.391 4.391 17 H 0.078 0.922 18 C -0.245 4.245 19 N -0.577 5.577 20 Si 0.789 3.211 21 H -0.203 1.203 22 H -0.221 1.221 23 H -0.208 1.208 24 C 0.056 3.944 25 C -0.158 4.158 26 C -0.149 4.149 27 C -0.010 4.010 28 H 0.269 0.731 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.027 0.973 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.061 0.939 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.319 -1.672 21.359 22.337 hybrid contribution 0.482 0.390 -1.245 1.391 sum -5.836 -1.282 20.114 20.983 Atomic orbital electron populations 1.25863 0.96852 0.99389 0.95879 1.23114 0.94920 1.02124 1.03726 1.19240 0.84500 1.02891 0.84126 1.87840 1.21936 1.95344 1.27099 1.22101 0.79510 1.01876 0.95867 1.21488 0.90876 1.06992 0.98166 1.20684 0.90869 0.75084 0.82293 1.90667 1.66264 1.52413 1.37094 1.48153 1.07402 1.71430 1.06370 1.21821 0.95755 0.98921 0.85000 1.21860 0.95692 0.98093 1.00109 1.20336 0.95101 0.95025 0.93862 1.21914 0.99536 0.97535 0.96019 1.21063 0.96672 0.87764 0.92897 1.44265 1.77446 1.01242 1.10277 1.19421 1.22793 1.08125 0.88722 0.92198 1.25698 0.97653 1.00554 1.00566 1.70150 1.27267 1.20584 1.39683 0.85446 0.78450 0.77102 0.80072 1.20317 1.22072 1.20783 1.20563 0.94754 0.88963 0.90156 1.22122 0.99615 0.97203 0.96844 1.21894 1.00468 0.97800 0.94778 1.21628 0.79629 0.98725 1.01051 0.73118 0.89360 0.89422 0.92244 0.92127 0.86497 0.86696 0.87488 0.91269 0.91345 0.90796 0.93147 0.90619 0.96055 0.93805 0.94230 0.97337 0.93872 0.91620 0.93903 0.90390 0.91237 0.91174 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 19.25 74.32 1.43 -0.90 16 2 C -0.24 -4.31 13.73 31.13 0.43 -3.89 16 3 C 0.17 2.67 6.41 70.18 0.45 3.12 16 4 O -0.40 -8.05 10.30 -148.98 -1.53 -9.58 16 5 C 0.08 1.52 5.23 71.98 0.38 1.90 16 6 C -0.14 -2.42 4.42 29.85 0.13 -2.29 16 7 C 0.52 12.24 7.70 87.66 0.67 12.92 16 8 O -0.58 -17.29 15.40 -3.03 -0.05 -17.34 16 9 N -0.60 -13.82 2.98 -819.65 -2.44 -16.26 16 10 C 0.11 2.38 5.85 86.22 0.50 2.88 16 11 C -0.12 -3.07 4.13 30.52 0.13 -2.94 16 12 C -0.04 -1.20 0.51 -52.13 -0.03 -1.23 16 13 C -0.11 -3.41 4.90 30.67 0.15 -3.26 16 14 C 0.14 5.52 6.05 86.36 0.52 6.05 16 15 N -0.61 -29.30 2.99 -699.10 -2.09 -31.39 16 16 C -0.26 -14.11 9.58 84.03 0.81 -13.30 16 17 H 0.06 3.21 7.88 -2.92 -0.02 3.19 16 18 C -0.05 -2.71 4.92 84.86 0.42 -2.30 16 19 N -0.93 -53.91 11.19 21.65 0.24 -53.67 16 20 Si 0.96 44.65 29.59 68.60 2.03 46.68 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 C 0.18 8.16 4.83 86.36 0.42 8.57 16 25 C -0.12 -4.08 4.14 30.67 0.13 -3.95 16 26 C -0.11 -2.61 4.90 30.69 0.15 -2.46 16 27 C 0.11 2.65 5.97 86.38 0.52 3.16 16 28 H 0.25 1.45 7.80 -4.42 -0.03 1.41 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.10 8.10 -2.38 -0.02 1.08 16 32 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 33 H 0.12 1.80 7.68 -2.39 -0.02 1.78 16 34 H 0.11 1.81 7.95 -2.39 -0.02 1.79 16 35 H 0.11 1.85 5.94 -2.39 -0.01 1.84 16 36 H 0.07 1.71 6.73 -2.38 -0.02 1.70 16 37 H 0.07 2.13 4.98 -2.39 -0.01 2.12 16 38 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.02 0.83 6.66 -2.39 -0.02 0.82 16 42 H 0.04 1.73 7.93 -2.39 -0.02 1.72 16 43 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 44 H 0.01 0.40 6.72 -2.39 -0.02 0.38 16 45 H 0.04 2.29 6.06 -2.39 -0.01 2.27 16 46 H 0.07 2.03 5.00 -2.39 -0.01 2.02 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.07 1.68 6.66 -2.39 -0.02 1.66 16 51 H 0.08 2.09 7.00 -2.39 -0.02 2.07 16 Total: -1.00 -68.26 390.96 4.27 -63.99 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.91 Total: 15.46 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 7.20 Total: 2.09 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -4.29 Total: -101.31 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -1.58 Total: -26.92 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -68.26 4.27 -63.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281789792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.759 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds