Wall clock time and date at job start Tue Mar 31 2020 19:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38129 * 119.94586 * 179.74253 * 6 5 4 8 8 C 1.38288 * 120.05279 * 0.50650 * 7 6 5 9 9 C 1.38250 * 120.10917 * 359.76642 * 8 7 6 10 10 C 1.50704 * 119.96871 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47316 * 270.02249 * 10 9 8 12 12 O 1.21283 * 119.99814 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99984 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.46893 * 324.99622 * 14 13 11 16 16 C 1.52999 * 109.47035 * 84.99629 * 14 13 11 17 17 C 1.52996 * 109.46982 * 204.99866 * 14 13 11 18 18 H 1.09009 * 109.47221 * 300.00007 * 17 14 13 19 19 C 1.52998 * 109.47253 * 59.99659 * 17 14 13 20 20 N 1.46498 * 109.47313 * 179.97438 * 17 14 13 21 21 C 1.36936 * 119.99883 * 154.99924 * 20 17 14 22 22 H 1.07994 * 120.00454 * 0.02562 * 21 20 17 23 23 C 1.38821 * 119.99616 * 180.02562 * 21 20 17 24 24 N 1.31615 * 119.99788 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99864 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47194 * 89.99978 * 25 23 21 27 27 H 1.48502 * 109.47186 * 210.00109 * 25 23 21 28 28 H 1.48504 * 109.47395 * 329.99974 * 25 23 21 29 29 C 1.38162 * 120.05723 * 359.97438 * 9 8 7 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 33 33 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 34 34 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 36 36 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 37 37 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 38 38 H 1.07992 * 119.97408 * 180.25091 * 7 6 5 39 39 H 1.07997 * 119.94352 * 179.74725 * 8 7 6 40 40 H 1.09003 * 109.46632 * 30.02434 * 10 9 8 41 41 H 1.08996 * 109.46429 * 150.02007 * 10 9 8 42 42 H 0.96999 * 119.99728 * 359.97438 * 13 11 10 43 43 H 1.09004 * 109.46930 * 60.00615 * 16 14 13 44 44 H 1.09004 * 109.46862 * 179.97438 * 16 14 13 45 45 H 1.08992 * 109.47604 * 300.00036 * 16 14 13 46 46 H 1.09007 * 109.47227 * 60.00140 * 19 17 14 47 47 H 1.09004 * 109.47761 * 179.97438 * 19 17 14 48 48 H 1.08996 * 109.47482 * 300.00530 * 19 17 14 49 49 H 0.97002 * 119.99612 * 335.00450 * 20 17 14 50 50 H 0.97004 * 119.99300 * 179.97438 * 24 23 21 51 51 H 1.07998 * 120.02891 * 180.02562 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0471 -0.0022 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0030 11 6 8.1019 4.0675 -1.4240 12 8 7.3145 4.0247 -2.3455 13 7 9.4250 4.1383 -1.6709 14 6 9.9119 4.1652 -3.0523 15 1 9.2715 3.5412 -3.6755 16 6 9.8864 5.6033 -3.5741 17 6 11.3449 3.6312 -3.0984 18 1 11.9855 4.2553 -2.4751 19 6 11.3704 2.1932 -2.5766 20 7 11.8317 3.6576 -4.4799 21 6 13.1760 3.7294 -4.7309 22 1 13.8773 3.7662 -3.9105 23 6 13.6372 3.7549 -6.0400 24 7 12.7824 3.7096 -7.0398 25 14 15.4708 3.8536 -6.3824 26 1 16.0319 2.4818 -6.4740 27 1 15.6972 4.5676 -7.6648 28 1 16.1413 4.5901 -5.2809 29 6 5.4712 2.7271 -0.0016 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 2.2529 3.7627 -0.0114 38 1 3.3742 5.9537 -0.0026 39 1 5.8324 6.0804 -0.0027 40 1 7.9161 4.9486 0.5108 41 1 8.0117 3.1712 0.5106 42 1 10.0547 4.1721 -0.9339 43 1 10.5270 6.2273 -2.9509 44 1 10.2492 5.6234 -4.6018 45 1 8.8656 5.9837 -3.5413 46 1 10.7299 1.5691 -3.1998 47 1 12.3913 1.8126 -2.6098 48 1 11.0080 2.1732 -1.5488 49 1 11.2018 3.6242 -5.2168 50 1 13.1048 3.7278 -7.9545 51 1 6.0606 1.8222 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282217444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:49 Heat of formation + Delta-G solvation = -56.981003 kcal Electronic energy + Delta-G solvation = -28061.590155 eV Core-core repulsion = 24153.924545 eV Total energy + Delta-G solvation = -3907.665610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.48034 -39.60692 -37.88325 -36.61361 -34.32735 -33.87908 -32.81300 -31.67759 -30.35665 -29.60032 -28.40277 -27.56020 -26.75375 -23.98374 -23.18356 -22.68074 -22.19875 -21.17690 -20.16985 -19.89116 -17.99469 -17.37471 -16.92451 -16.57881 -16.41268 -16.17198 -15.57926 -15.00163 -14.64315 -14.48781 -14.35306 -14.08935 -13.77876 -13.63744 -13.34038 -13.31181 -13.04819 -12.82789 -12.59525 -12.57140 -12.41418 -12.16104 -11.78836 -11.67503 -11.66511 -11.59501 -11.54269 -11.14716 -10.96027 -10.93284 -10.92474 -10.83865 -10.66132 -10.21221 -9.87580 -9.79780 -9.60641 -9.00035 -8.93598 -8.71150 -8.31414 -6.98458 -5.77314 -3.06828 1.15325 1.34545 2.83110 2.90770 3.31548 3.43010 3.48213 3.49834 3.75409 4.40726 4.45830 4.52160 4.59312 4.67675 4.77516 4.82767 4.93719 4.98932 5.01580 5.07367 5.18649 5.21054 5.28597 5.36181 5.41642 5.50410 5.52244 5.54687 5.62939 5.70619 5.76578 5.78143 5.88405 5.92430 6.12453 6.14633 6.25648 6.27671 6.41408 6.44778 6.44859 6.54911 6.61062 6.65451 6.83114 6.98454 7.05092 7.25096 7.68509 7.74680 8.39878 8.45886 9.51637 10.07467 10.42444 11.45037 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.001883 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.446357 B =14868.270794 C =15515.369818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.059 3.941 4 O -0.317 6.317 5 C 0.130 3.870 6 C -0.211 4.211 7 C -0.080 4.080 8 C -0.142 4.142 9 C -0.022 4.022 10 C -0.105 4.105 11 C 0.512 3.488 12 O -0.532 6.532 13 N -0.719 5.719 14 C 0.136 3.864 15 H 0.084 0.916 16 C -0.152 4.152 17 C 0.169 3.831 18 H 0.050 0.950 19 C -0.164 4.164 20 N -0.718 5.718 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.136 4.136 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.397 0.603 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.054 0.946 48 H 0.035 0.965 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.695 -1.010 20.358 29.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.231 6.231 5 C 0.085 3.915 6 C -0.230 4.230 7 C -0.098 4.098 8 C -0.160 4.160 9 C -0.023 4.023 10 C -0.145 4.145 11 C 0.297 3.703 12 O -0.408 6.408 13 N -0.370 5.370 14 C 0.031 3.969 15 H 0.102 0.898 16 C -0.210 4.210 17 C 0.058 3.942 18 H 0.068 0.932 19 C -0.224 4.224 20 N -0.360 5.360 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.578 5.578 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.155 4.155 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.231 0.769 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.993 -1.212 19.653 29.520 hybrid contribution 0.975 0.172 -0.214 1.012 sum -21.019 -1.040 19.439 28.649 Atomic orbital electron populations 1.21688 0.94263 1.02562 1.02183 1.21488 0.96004 0.94883 1.03838 1.22856 0.78622 0.98787 1.01344 1.86049 1.21155 1.27126 1.88751 1.18873 0.92117 0.84014 0.96523 1.21185 0.99776 0.92505 1.09510 1.20856 0.94485 0.96904 0.97563 1.20886 0.93788 0.97843 1.03482 1.19043 0.93808 0.92519 0.96920 1.20719 0.92737 1.05367 0.95675 1.20360 0.82551 0.76581 0.90772 1.90739 1.55114 1.48828 1.46136 1.46081 1.06684 1.74821 1.09436 1.21317 0.96589 0.97562 0.81401 0.89804 1.22042 1.00492 0.95561 1.02915 1.20393 0.90816 0.93828 0.89167 0.93209 1.22444 1.01586 0.99882 0.98493 1.42294 1.05078 1.88422 1.00220 1.19194 0.83290 1.42819 0.91712 0.91156 1.24745 0.97572 1.02914 0.95608 1.69666 1.32619 1.57329 0.98226 0.86197 0.85186 0.77489 0.77322 1.21771 1.21805 1.20798 1.20212 0.91370 0.98065 1.05845 0.92327 0.91692 0.92419 0.90691 0.90828 0.92148 0.92042 0.85799 0.85850 0.86003 0.87760 0.87816 0.76937 0.93144 0.90202 0.93512 0.93458 0.92704 0.94553 0.78056 0.93466 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.15 0.37 -0.34 16 2 C -0.12 -0.81 6.30 -26.74 -0.17 -0.98 16 3 C 0.06 0.47 4.74 37.16 0.18 0.65 16 4 O -0.32 -3.64 10.14 -19.43 -0.20 -3.84 16 5 C 0.13 1.56 6.69 -39.22 -0.26 1.30 16 6 C -0.21 -2.22 9.04 -39.43 -0.36 -2.57 16 7 C -0.08 -0.81 10.04 -39.60 -0.40 -1.21 16 8 C -0.14 -1.55 9.70 -39.56 -0.38 -1.94 16 9 C -0.02 -0.26 4.37 -104.64 -0.46 -0.72 16 10 C -0.11 -1.03 5.83 -29.03 -0.17 -1.20 16 11 C 0.51 7.15 7.79 -10.99 -0.09 7.07 16 12 O -0.53 -9.89 15.70 5.55 0.09 -9.80 16 13 N -0.72 -9.57 4.38 -53.81 -0.24 -9.81 16 14 C 0.14 2.33 2.21 -67.93 -0.15 2.18 16 15 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 16 C -0.15 -2.66 9.33 37.16 0.35 -2.31 16 17 C 0.17 3.21 2.52 -67.93 -0.17 3.04 16 18 H 0.05 0.93 8.08 -51.92 -0.42 0.51 16 19 C -0.16 -2.89 9.33 37.16 0.35 -2.54 16 20 N -0.72 -17.49 4.43 -53.43 -0.24 -17.72 16 21 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 25 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 C -0.14 -1.69 9.64 -39.43 -0.38 -2.07 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.40 7.68 -51.93 -0.40 0.01 16 36 H 0.06 0.46 7.65 -51.93 -0.40 0.07 16 37 H 0.12 1.02 6.30 -52.48 -0.33 0.68 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.10 0.75 8.09 -51.93 -0.42 0.33 16 41 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 42 H 0.40 4.09 8.39 -40.82 -0.34 3.75 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.60 7.45 -51.93 -0.39 1.21 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.04 0.51 7.45 -51.93 -0.39 0.13 16 49 H 0.39 10.16 7.58 -40.82 -0.31 9.85 16 50 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 51 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 419.34 15.07 6.32 6.32 Total: -1.00 -33.45 419.34 -9.38 -42.83 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -8.82 Total: 10.73 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.99 Total: -8.68 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.25 Total: -54.69 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.11 Total: -13.64 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.45 -9.38 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282217444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.156 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds