Wall clock time and date at job start Tue Mar 31 2020 19:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38129 * 119.94586 * 179.74253 * 6 5 4 8 8 C 1.38288 * 120.05279 * 0.50650 * 7 6 5 9 9 C 1.38250 * 120.10917 * 359.76642 * 8 7 6 10 10 C 1.50704 * 119.96871 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47316 * 270.02249 * 10 9 8 12 12 O 1.21283 * 119.99814 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99984 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.46893 * 324.99622 * 14 13 11 16 16 C 1.52999 * 109.47035 * 84.99629 * 14 13 11 17 17 C 1.52996 * 109.46982 * 204.99866 * 14 13 11 18 18 H 1.09009 * 109.47221 * 300.00007 * 17 14 13 19 19 C 1.52998 * 109.47253 * 59.99659 * 17 14 13 20 20 N 1.46498 * 109.47313 * 179.97438 * 17 14 13 21 21 C 1.36936 * 119.99883 * 154.99924 * 20 17 14 22 22 H 1.07994 * 120.00454 * 0.02562 * 21 20 17 23 23 C 1.38821 * 119.99616 * 180.02562 * 21 20 17 24 24 N 1.31615 * 119.99788 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99864 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47194 * 89.99978 * 25 23 21 27 27 H 1.48502 * 109.47186 * 210.00109 * 25 23 21 28 28 H 1.48504 * 109.47395 * 329.99974 * 25 23 21 29 29 C 1.38162 * 120.05723 * 359.97438 * 9 8 7 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 33 33 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 34 34 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 36 36 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 37 37 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 38 38 H 1.07992 * 119.97408 * 180.25091 * 7 6 5 39 39 H 1.07997 * 119.94352 * 179.74725 * 8 7 6 40 40 H 1.09003 * 109.46632 * 30.02434 * 10 9 8 41 41 H 1.08996 * 109.46429 * 150.02007 * 10 9 8 42 42 H 0.96999 * 119.99728 * 359.97438 * 13 11 10 43 43 H 1.09004 * 109.46930 * 60.00615 * 16 14 13 44 44 H 1.09004 * 109.46862 * 179.97438 * 16 14 13 45 45 H 1.08992 * 109.47604 * 300.00036 * 16 14 13 46 46 H 1.09007 * 109.47227 * 60.00140 * 19 17 14 47 47 H 1.09004 * 109.47761 * 179.97438 * 19 17 14 48 48 H 1.08996 * 109.47482 * 300.00530 * 19 17 14 49 49 H 0.97002 * 119.99612 * 335.00450 * 20 17 14 50 50 H 0.97004 * 119.99300 * 179.97438 * 24 23 21 51 51 H 1.07998 * 120.02891 * 180.02562 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0471 -0.0022 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0030 11 6 8.1019 4.0675 -1.4240 12 8 7.3145 4.0247 -2.3455 13 7 9.4250 4.1383 -1.6709 14 6 9.9119 4.1652 -3.0523 15 1 9.2715 3.5412 -3.6755 16 6 9.8864 5.6033 -3.5741 17 6 11.3449 3.6312 -3.0984 18 1 11.9855 4.2553 -2.4751 19 6 11.3704 2.1932 -2.5766 20 7 11.8317 3.6576 -4.4799 21 6 13.1760 3.7294 -4.7309 22 1 13.8773 3.7662 -3.9105 23 6 13.6372 3.7549 -6.0400 24 7 12.7824 3.7096 -7.0398 25 14 15.4708 3.8536 -6.3824 26 1 16.0319 2.4818 -6.4740 27 1 15.6972 4.5676 -7.6648 28 1 16.1413 4.5901 -5.2809 29 6 5.4712 2.7271 -0.0016 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 2.2529 3.7627 -0.0114 38 1 3.3742 5.9537 -0.0026 39 1 5.8324 6.0804 -0.0027 40 1 7.9161 4.9486 0.5108 41 1 8.0117 3.1712 0.5106 42 1 10.0547 4.1721 -0.9339 43 1 10.5270 6.2273 -2.9509 44 1 10.2492 5.6234 -4.6018 45 1 8.8656 5.9837 -3.5413 46 1 10.7299 1.5691 -3.1998 47 1 12.3913 1.8126 -2.6098 48 1 11.0080 2.1732 -1.5488 49 1 11.2018 3.6242 -5.2168 50 1 13.1048 3.7278 -7.9545 51 1 6.0606 1.8222 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282217444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:48 Heat of formation + Delta-G solvation = -77.333101 kcal Electronic energy + Delta-G solvation = -28062.472689 eV Core-core repulsion = 24153.924545 eV Total energy + Delta-G solvation = -3908.548143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.35407 -40.68997 -38.79929 -38.02847 -35.54377 -34.87293 -33.81591 -33.29461 -31.27782 -30.89982 -30.12841 -28.46042 -27.35139 -25.90337 -24.45453 -23.59293 -22.97036 -22.02556 -21.50315 -21.11637 -19.37178 -18.74640 -18.07235 -17.24277 -17.18281 -17.02213 -16.91248 -16.54529 -15.96983 -15.44836 -15.37977 -15.10232 -15.02015 -14.81133 -14.68720 -14.57152 -14.16847 -14.05484 -13.49061 -13.46646 -13.27369 -13.20514 -13.05910 -12.91423 -12.79288 -12.73924 -12.55746 -12.39626 -12.23516 -12.21289 -12.14331 -12.13412 -11.71954 -11.67289 -11.53817 -11.43481 -10.97835 -10.87189 -10.02672 -9.77776 -9.13105 -9.00067 -7.91002 -5.19922 0.33164 0.51986 1.49497 1.50887 1.59066 1.74811 2.15829 2.27362 2.60498 2.87691 3.43192 3.66814 3.80570 3.84936 3.92101 3.98475 4.01989 4.11263 4.15806 4.21070 4.26088 4.29349 4.38708 4.41448 4.47766 4.52853 4.56244 4.61298 4.67666 4.76867 4.82226 4.85385 4.91270 4.98832 5.06791 5.09853 5.10483 5.15576 5.22613 5.31348 5.33217 5.36017 5.48475 5.53166 5.53656 5.63441 5.64751 5.84879 6.29749 6.47896 6.68518 7.35861 7.38886 8.10096 8.33090 9.32559 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.001883 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.446357 B =14868.270794 C =15515.369818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.053 3.947 4 O -0.337 6.337 5 C 0.111 3.889 6 C -0.216 4.216 7 C -0.085 4.085 8 C -0.154 4.154 9 C -0.035 4.035 10 C -0.094 4.094 11 C 0.512 3.488 12 O -0.583 6.583 13 N -0.705 5.705 14 C 0.151 3.849 15 H 0.053 0.947 16 C -0.142 4.142 17 C 0.167 3.833 18 H 0.064 0.936 19 C -0.154 4.154 20 N -0.731 5.731 21 C -0.232 4.232 22 H 0.082 0.918 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.972 3.028 26 H -0.291 1.291 27 H -0.300 1.300 28 H -0.266 1.266 29 C -0.160 4.160 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.417 0.583 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.028 0.972 47 H 0.042 0.958 48 H 0.077 0.923 49 H 0.370 0.630 50 H 0.249 0.751 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.757 -0.244 23.248 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.022 4.022 4 O -0.252 6.252 5 C 0.066 3.934 6 C -0.234 4.234 7 C -0.102 4.102 8 C -0.172 4.172 9 C -0.036 4.036 10 C -0.133 4.133 11 C 0.300 3.700 12 O -0.462 6.462 13 N -0.358 5.358 14 C 0.045 3.955 15 H 0.071 0.929 16 C -0.200 4.200 17 C 0.058 3.942 18 H 0.082 0.918 19 C -0.214 4.214 20 N -0.372 5.372 21 C -0.364 4.364 22 H 0.100 0.900 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.801 3.199 26 H -0.218 1.218 27 H -0.227 1.227 28 H -0.190 1.190 29 C -0.179 4.179 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.148 0.852 42 H 0.254 0.746 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.061 0.939 48 H 0.095 0.905 49 H 0.202 0.798 50 H 0.057 0.943 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.038 -0.450 22.642 31.600 hybrid contribution 0.884 -0.078 -1.032 1.361 sum -21.154 -0.528 21.610 30.245 Atomic orbital electron populations 1.21676 0.92645 1.03235 1.02742 1.21509 0.97306 0.93951 1.03294 1.23095 0.77090 0.99875 1.02119 1.86025 1.22964 1.27327 1.88833 1.19126 0.92449 0.84724 0.97058 1.21468 1.00863 0.92201 1.08910 1.21236 0.94691 0.97762 0.96548 1.21213 0.94370 0.98368 1.03246 1.19291 0.94914 0.92422 0.96966 1.20761 0.91573 1.08310 0.92699 1.21111 0.81905 0.74917 0.92101 1.90730 1.56325 1.51001 1.48150 1.45837 1.07219 1.74507 1.08213 1.20834 0.94868 0.96523 0.83281 0.92906 1.21914 1.00626 0.96142 1.01353 1.20586 0.91839 0.95057 0.86683 0.91816 1.22304 1.00645 0.98012 1.00465 1.42493 1.04155 1.88423 1.02080 1.19617 0.84616 1.40295 0.91892 0.90034 1.25551 1.01634 1.04107 0.95724 1.69838 1.34425 1.59737 0.98208 0.85159 0.80475 0.77233 0.76999 1.21799 1.22714 1.19048 1.20412 0.91913 0.98514 1.07023 0.92099 0.90988 0.91514 0.91723 0.90915 0.90713 0.91783 0.83837 0.83331 0.84419 0.84272 0.85198 0.74606 0.91496 0.93362 0.93479 0.95279 0.93876 0.90469 0.79794 0.94252 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.12 -1.55 6.30 30.59 0.19 -1.36 16 3 C 0.05 0.81 4.74 71.98 0.34 1.15 16 4 O -0.34 -7.81 10.14 -92.43 -0.94 -8.75 16 5 C 0.11 2.67 6.69 22.50 0.15 2.82 16 6 C -0.22 -4.29 9.04 22.37 0.20 -4.09 16 7 C -0.08 -1.57 10.04 22.26 0.22 -1.35 16 8 C -0.15 -3.09 9.70 22.28 0.22 -2.87 16 9 C -0.04 -0.77 4.37 -19.88 -0.09 -0.86 16 10 C -0.09 -1.56 5.83 29.10 0.17 -1.39 16 11 C 0.51 13.40 7.79 87.66 0.68 14.08 16 12 O -0.58 -21.60 15.70 -3.04 -0.05 -21.65 16 13 N -0.70 -17.13 4.38 -442.55 -1.94 -19.07 16 14 C 0.15 5.10 2.21 44.99 0.10 5.20 16 15 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 16 C -0.14 -4.94 9.33 71.98 0.67 -4.27 16 17 C 0.17 6.17 2.52 44.99 0.11 6.29 16 18 H 0.06 2.21 8.08 -2.38 -0.02 2.19 16 19 C -0.15 -5.20 9.33 71.98 0.67 -4.53 16 20 N -0.73 -35.92 4.43 -322.94 -1.43 -37.35 16 21 C -0.23 -12.50 9.93 84.04 0.83 -11.66 16 22 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 23 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 24 N -0.97 -59.79 13.06 21.65 0.28 -59.50 16 25 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 29 C -0.16 -3.92 9.64 22.36 0.22 -3.70 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.91 7.68 -2.39 -0.02 0.89 16 36 H 0.06 0.93 7.65 -2.39 -0.02 0.91 16 37 H 0.14 2.12 6.30 -2.91 -0.02 2.11 16 38 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.14 1.37 8.09 -2.39 -0.02 1.35 16 41 H 0.13 1.51 8.08 -2.39 -0.02 1.49 16 42 H 0.42 6.96 8.39 -92.71 -0.78 6.18 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.05 1.98 7.45 -2.38 -0.02 1.96 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.03 1.06 8.14 -2.38 -0.02 1.05 16 47 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.08 1.94 7.45 -2.39 -0.02 1.93 16 49 H 0.37 20.25 7.58 -92.71 -0.70 19.55 16 50 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 51 H 0.12 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -74.97 419.34 3.27 -71.71 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: -0.57 Total: 37.80 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 5.88 Total: -10.99 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -3.09 Total: -115.93 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.98 Total: -30.40 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -74.97 3.27 -71.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282217444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.628 kcal (2) G-P(sol) polarization free energy of solvation -74.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds