Wall clock time and date at job start Tue Mar 31 2020 19:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38129 * 119.94586 * 179.74253 * 6 5 4 8 8 C 1.38288 * 120.05279 * 0.50650 * 7 6 5 9 9 C 1.38250 * 120.10917 * 359.76642 * 8 7 6 10 10 C 1.50704 * 119.96871 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47316 * 270.02249 * 10 9 8 12 12 O 1.21283 * 119.99814 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99984 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47382 * 34.99879 * 14 13 11 16 16 C 1.53000 * 109.46933 * 274.99888 * 14 13 11 17 17 C 1.52999 * 109.46980 * 155.00035 * 14 13 11 18 18 H 1.08992 * 109.47307 * 59.99697 * 17 14 13 19 19 C 1.53005 * 109.47059 * 299.99379 * 17 14 13 20 20 N 1.46502 * 109.46980 * 179.97438 * 17 14 13 21 21 C 1.36936 * 119.99645 * 204.99859 * 20 17 14 22 22 H 1.07994 * 120.00454 * 359.97438 * 21 20 17 23 23 C 1.38821 * 119.99616 * 179.97438 * 21 20 17 24 24 N 1.31615 * 119.99788 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99864 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46868 * 59.99878 * 25 23 21 27 27 H 1.48498 * 109.47215 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47249 * 299.99974 * 25 23 21 29 29 C 1.38162 * 120.05723 * 359.97438 * 9 8 7 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 33 33 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 34 34 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 36 36 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 37 37 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 38 38 H 1.07992 * 119.97408 * 180.25091 * 7 6 5 39 39 H 1.07997 * 119.94352 * 179.74725 * 8 7 6 40 40 H 1.09003 * 109.46632 * 30.02434 * 10 9 8 41 41 H 1.08996 * 109.46429 * 150.02007 * 10 9 8 42 42 H 0.96999 * 119.99728 * 359.97438 * 13 11 10 43 43 H 1.09001 * 109.47367 * 59.99953 * 16 14 13 44 44 H 1.08996 * 109.46784 * 180.02562 * 16 14 13 45 45 H 1.09002 * 109.47079 * 300.00176 * 16 14 13 46 46 H 1.09002 * 109.46973 * 179.97438 * 19 17 14 47 47 H 1.08994 * 109.47012 * 300.00742 * 19 17 14 48 48 H 1.09008 * 109.46483 * 60.00375 * 19 17 14 49 49 H 0.96995 * 119.99834 * 24.99601 * 20 17 14 50 50 H 0.97002 * 119.99768 * 180.02562 * 24 23 21 51 51 H 1.07998 * 120.02891 * 180.02562 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0471 -0.0022 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0030 11 6 8.1019 4.0675 -1.4240 12 8 7.3145 4.0247 -2.3455 13 7 9.4250 4.1383 -1.6709 14 6 9.9119 4.1652 -3.0523 15 1 9.2086 4.7184 -3.6748 16 6 10.0396 2.7333 -3.5761 17 6 11.2800 4.8487 -3.0976 18 1 11.9833 4.2956 -2.4751 19 6 11.1523 6.2807 -2.5739 20 7 11.7672 4.8751 -4.4789 21 6 13.1116 4.9470 -4.7294 22 1 13.8126 4.9846 -3.9088 23 6 13.5733 4.9714 -6.0384 24 7 12.7189 4.9251 -7.0385 25 14 15.4070 5.0702 -6.3802 26 1 16.0861 3.8927 -5.7822 27 1 15.6372 5.0815 -7.8472 28 1 15.9557 6.3141 -5.7830 29 6 5.4712 2.7271 -0.0016 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 2.2529 3.7627 -0.0114 38 1 3.3742 5.9537 -0.0026 39 1 5.8324 6.0804 -0.0027 40 1 7.9161 4.9486 0.5108 41 1 8.0117 3.1712 0.5106 42 1 10.0547 4.1721 -0.9339 43 1 9.0650 2.2463 -3.5438 44 1 10.4023 2.7534 -4.6037 45 1 10.7429 2.1801 -2.9536 46 1 12.1270 6.7675 -2.6057 47 1 10.4489 6.8337 -3.1963 48 1 10.7899 6.2606 -1.5460 49 1 11.1376 4.8417 -5.2160 50 1 13.0416 4.9418 -7.9531 51 1 6.0606 1.8222 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282217447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:53 Heat of formation + Delta-G solvation = -56.909288 kcal Electronic energy + Delta-G solvation = -28040.116208 eV Core-core repulsion = 24132.453707 eV Total energy + Delta-G solvation = -3907.662500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.48252 -39.60762 -37.88518 -36.61316 -34.33550 -33.87751 -32.81270 -31.67726 -30.36130 -29.59278 -28.40619 -27.56124 -26.75846 -23.98287 -23.19227 -22.66381 -22.21227 -21.17906 -20.16983 -19.89083 -18.00120 -17.37210 -16.92398 -16.58593 -16.41885 -16.17338 -15.51107 -15.09745 -14.69121 -14.49381 -14.21473 -14.13213 -13.77799 -13.64553 -13.36567 -13.29321 -13.04244 -12.85189 -12.59654 -12.57927 -12.42023 -12.12770 -11.81914 -11.71814 -11.62737 -11.59275 -11.53085 -11.15134 -10.96334 -10.93641 -10.92768 -10.82105 -10.66151 -10.23920 -9.88163 -9.79470 -9.60359 -8.99461 -8.93932 -8.70906 -8.31543 -6.98529 -5.77085 -3.06695 1.15294 1.34561 2.83109 2.90201 3.31568 3.43459 3.48189 3.49169 3.75449 4.40189 4.44939 4.52071 4.59433 4.67501 4.76761 4.82797 4.93321 4.98209 5.01472 5.07225 5.18619 5.20902 5.28742 5.36410 5.41219 5.50190 5.51289 5.54564 5.61950 5.70533 5.75593 5.78591 5.88159 5.92610 6.12495 6.14411 6.26159 6.27995 6.41433 6.44178 6.45485 6.54711 6.60918 6.65685 6.83514 6.98614 7.04675 7.24604 7.68068 7.74761 8.40082 8.45955 9.51754 10.07550 10.42555 11.45184 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022697 B = 0.001844 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.370397 B =15184.177304 C =15855.335832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.317 6.317 5 C 0.129 3.871 6 C -0.211 4.211 7 C -0.080 4.080 8 C -0.141 4.141 9 C -0.022 4.022 10 C -0.105 4.105 11 C 0.512 3.488 12 O -0.532 6.532 13 N -0.719 5.719 14 C 0.136 3.864 15 H 0.084 0.916 16 C -0.152 4.152 17 C 0.169 3.831 18 H 0.050 0.950 19 C -0.164 4.164 20 N -0.718 5.718 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.136 4.136 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.397 0.603 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.035 0.965 49 H 0.385 0.615 50 H 0.256 0.744 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.475 -5.084 20.315 29.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.231 6.231 5 C 0.084 3.916 6 C -0.230 4.230 7 C -0.098 4.098 8 C -0.160 4.160 9 C -0.023 4.023 10 C -0.145 4.145 11 C 0.297 3.703 12 O -0.408 6.408 13 N -0.370 5.370 14 C 0.032 3.968 15 H 0.102 0.898 16 C -0.210 4.210 17 C 0.058 3.942 18 H 0.068 0.932 19 C -0.224 4.224 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.155 4.155 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.231 0.769 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.054 0.946 49 H 0.219 0.781 50 H 0.066 0.934 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.773 -5.315 19.599 29.773 hybrid contribution 0.972 0.333 -0.201 1.047 sum -20.802 -4.981 19.399 28.876 Atomic orbital electron populations 1.21689 0.94259 1.02558 1.02197 1.21487 0.96010 0.94887 1.03813 1.22856 0.78625 0.98776 1.01360 1.86044 1.21153 1.27141 1.88774 1.18870 0.92114 0.84005 0.96577 1.21185 0.99775 0.92506 1.09501 1.20862 0.94492 0.96915 0.97512 1.20898 0.93795 0.97884 1.03381 1.19044 0.93811 0.92520 0.96919 1.20719 0.92732 1.05370 0.95677 1.20360 0.82529 0.76606 0.90772 1.90739 1.55158 1.48785 1.46136 1.46082 1.06689 1.74813 1.09438 1.21318 0.96907 0.97236 0.81385 0.89817 1.22044 1.00514 0.95578 1.02901 1.20393 0.91407 0.93236 0.89175 0.93214 1.22443 1.01484 0.99992 0.98464 1.42284 1.05063 1.88435 1.00214 1.19150 0.83280 1.42991 0.91697 0.91212 1.24742 0.97567 1.02873 0.95599 1.69653 1.32732 1.57223 0.98249 0.86271 0.85198 0.77807 0.76894 1.21298 1.21723 1.21314 1.20200 0.91354 0.98029 1.05932 0.92321 0.91697 0.92410 0.90710 0.90837 0.92142 0.92038 0.85800 0.85828 0.85953 0.87725 0.87851 0.76938 0.93495 0.90203 0.93140 0.92709 0.93462 0.94568 0.78056 0.93410 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.15 0.37 -0.32 16 2 C -0.12 -0.79 6.30 -26.74 -0.17 -0.96 16 3 C 0.06 0.46 4.74 37.16 0.18 0.64 16 4 O -0.32 -3.60 10.14 -19.43 -0.20 -3.80 16 5 C 0.13 1.55 6.69 -39.22 -0.26 1.29 16 6 C -0.21 -2.22 9.04 -39.43 -0.36 -2.57 16 7 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 8 C -0.14 -1.57 9.70 -39.56 -0.38 -1.95 16 9 C -0.02 -0.26 4.37 -104.64 -0.46 -0.72 16 10 C -0.11 -1.03 5.83 -29.03 -0.17 -1.20 16 11 C 0.51 7.16 7.79 -10.99 -0.09 7.07 16 12 O -0.53 -9.89 15.70 5.55 0.09 -9.80 16 13 N -0.72 -9.58 4.38 -53.81 -0.24 -9.81 16 14 C 0.14 2.34 2.21 -67.93 -0.15 2.19 16 15 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 16 C -0.15 -2.69 9.33 37.16 0.35 -2.34 16 17 C 0.17 3.20 2.52 -67.93 -0.17 3.03 16 18 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 19 C -0.16 -2.86 9.34 37.16 0.35 -2.51 16 20 N -0.72 -17.47 4.43 -53.42 -0.24 -17.71 16 21 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 25 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 C -0.14 -1.67 9.64 -39.43 -0.38 -2.05 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.40 7.68 -51.93 -0.40 0.00 16 36 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 37 H 0.12 1.02 6.30 -52.48 -0.33 0.68 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 41 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.40 4.10 8.39 -40.82 -0.34 3.75 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.61 7.44 -51.93 -0.39 1.22 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.04 0.50 7.44 -51.92 -0.39 0.12 16 49 H 0.39 10.15 7.58 -40.82 -0.31 9.84 16 50 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 51 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 419.34 15.07 6.32 6.32 Total: -1.00 -33.39 419.34 -9.37 -42.76 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -8.82 Total: 10.74 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.99 Total: -8.68 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.25 Total: -54.66 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.11 Total: -13.60 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.39 -9.37 -42.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282217447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.148 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds