Wall clock time and date at job start Tue Mar 31 2020 19:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38129 * 119.94586 * 179.74253 * 6 5 4 8 8 C 1.38288 * 120.05279 * 0.50650 * 7 6 5 9 9 C 1.38250 * 120.10917 * 359.76642 * 8 7 6 10 10 C 1.50704 * 119.96871 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47316 * 270.02249 * 10 9 8 12 12 O 1.21283 * 119.99814 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99984 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47382 * 34.99879 * 14 13 11 16 16 C 1.53000 * 109.46933 * 274.99888 * 14 13 11 17 17 C 1.52999 * 109.46980 * 155.00035 * 14 13 11 18 18 H 1.08992 * 109.47307 * 59.99697 * 17 14 13 19 19 C 1.53005 * 109.47059 * 299.99379 * 17 14 13 20 20 N 1.46502 * 109.46980 * 179.97438 * 17 14 13 21 21 C 1.36936 * 119.99645 * 204.99859 * 20 17 14 22 22 H 1.07994 * 120.00454 * 359.97438 * 21 20 17 23 23 C 1.38821 * 119.99616 * 179.97438 * 21 20 17 24 24 N 1.31615 * 119.99788 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99864 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46868 * 59.99878 * 25 23 21 27 27 H 1.48498 * 109.47215 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47249 * 299.99974 * 25 23 21 29 29 C 1.38162 * 120.05723 * 359.97438 * 9 8 7 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 33 33 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 34 34 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 36 36 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 37 37 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 38 38 H 1.07992 * 119.97408 * 180.25091 * 7 6 5 39 39 H 1.07997 * 119.94352 * 179.74725 * 8 7 6 40 40 H 1.09003 * 109.46632 * 30.02434 * 10 9 8 41 41 H 1.08996 * 109.46429 * 150.02007 * 10 9 8 42 42 H 0.96999 * 119.99728 * 359.97438 * 13 11 10 43 43 H 1.09001 * 109.47367 * 59.99953 * 16 14 13 44 44 H 1.08996 * 109.46784 * 180.02562 * 16 14 13 45 45 H 1.09002 * 109.47079 * 300.00176 * 16 14 13 46 46 H 1.09002 * 109.46973 * 179.97438 * 19 17 14 47 47 H 1.08994 * 109.47012 * 300.00742 * 19 17 14 48 48 H 1.09008 * 109.46483 * 60.00375 * 19 17 14 49 49 H 0.96995 * 119.99834 * 24.99601 * 20 17 14 50 50 H 0.97002 * 119.99768 * 180.02562 * 24 23 21 51 51 H 1.07998 * 120.02891 * 180.02562 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0471 -0.0022 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0030 11 6 8.1019 4.0675 -1.4240 12 8 7.3145 4.0247 -2.3455 13 7 9.4250 4.1383 -1.6709 14 6 9.9119 4.1652 -3.0523 15 1 9.2086 4.7184 -3.6748 16 6 10.0396 2.7333 -3.5761 17 6 11.2800 4.8487 -3.0976 18 1 11.9833 4.2956 -2.4751 19 6 11.1523 6.2807 -2.5739 20 7 11.7672 4.8751 -4.4789 21 6 13.1116 4.9470 -4.7294 22 1 13.8126 4.9846 -3.9088 23 6 13.5733 4.9714 -6.0384 24 7 12.7189 4.9251 -7.0385 25 14 15.4070 5.0702 -6.3802 26 1 16.0861 3.8927 -5.7822 27 1 15.6372 5.0815 -7.8472 28 1 15.9557 6.3141 -5.7830 29 6 5.4712 2.7271 -0.0016 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 2.2529 3.7627 -0.0114 38 1 3.3742 5.9537 -0.0026 39 1 5.8324 6.0804 -0.0027 40 1 7.9161 4.9486 0.5108 41 1 8.0117 3.1712 0.5106 42 1 10.0547 4.1721 -0.9339 43 1 9.0650 2.2463 -3.5438 44 1 10.4023 2.7534 -4.6037 45 1 10.7429 2.1801 -2.9536 46 1 12.1270 6.7675 -2.6057 47 1 10.4489 6.8337 -3.1963 48 1 10.7899 6.2606 -1.5460 49 1 11.1376 4.8417 -5.2160 50 1 13.0416 4.9418 -7.9531 51 1 6.0606 1.8222 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282217447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:52 Heat of formation + Delta-G solvation = -77.178606 kcal Electronic energy + Delta-G solvation = -28040.995151 eV Core-core repulsion = 24132.453707 eV Total energy + Delta-G solvation = -3908.541444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.35441 -40.68994 -38.79851 -38.02647 -35.54104 -34.87187 -33.81558 -33.29201 -31.28618 -30.89432 -30.12300 -28.46320 -27.34984 -25.89742 -24.45979 -23.58402 -22.97540 -22.02323 -21.50194 -21.11502 -19.36947 -18.74704 -18.07178 -17.24080 -17.20680 -17.00065 -16.88540 -16.51908 -16.07756 -15.43544 -15.30056 -15.08385 -15.05507 -14.78551 -14.72393 -14.56487 -14.16908 -14.04140 -13.58258 -13.40178 -13.27274 -13.18186 -13.04673 -12.92565 -12.81662 -12.69228 -12.54453 -12.39386 -12.22764 -12.22412 -12.19389 -12.13624 -11.71582 -11.67195 -11.53739 -11.43648 -10.96178 -10.87064 -10.02883 -9.77808 -9.13164 -8.99609 -7.90519 -5.19458 0.33093 0.51891 1.49654 1.52344 1.58215 1.74786 2.15769 2.27236 2.60885 2.87610 3.43495 3.66794 3.80567 3.84979 3.92236 3.98532 4.02405 4.12066 4.13896 4.23079 4.25324 4.29008 4.38474 4.41484 4.47758 4.52936 4.56271 4.61539 4.67732 4.76811 4.81685 4.86117 4.90787 4.98904 5.07184 5.09922 5.10630 5.15707 5.22822 5.31374 5.32574 5.35930 5.48494 5.53179 5.54676 5.63445 5.64737 5.84555 6.30060 6.47739 6.68482 7.36237 7.38843 8.10653 8.33591 9.32805 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022697 B = 0.001844 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.370397 B =15184.177304 C =15855.335832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.053 3.947 4 O -0.336 6.336 5 C 0.112 3.888 6 C -0.216 4.216 7 C -0.085 4.085 8 C -0.155 4.155 9 C -0.035 4.035 10 C -0.094 4.094 11 C 0.512 3.488 12 O -0.583 6.583 13 N -0.705 5.705 14 C 0.152 3.848 15 H 0.055 0.945 16 C -0.143 4.143 17 C 0.167 3.833 18 H 0.062 0.938 19 C -0.154 4.154 20 N -0.731 5.731 21 C -0.234 4.234 22 H 0.081 0.919 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.972 3.028 26 H -0.277 1.277 27 H -0.301 1.301 28 H -0.278 1.278 29 C -0.159 4.159 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.417 0.583 43 H 0.044 0.956 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.030 0.970 48 H 0.078 0.922 49 H 0.370 0.630 50 H 0.249 0.751 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.521 -4.632 23.184 31.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.022 4.022 4 O -0.251 6.251 5 C 0.067 3.933 6 C -0.234 4.234 7 C -0.103 4.103 8 C -0.173 4.173 9 C -0.036 4.036 10 C -0.133 4.133 11 C 0.300 3.700 12 O -0.462 6.462 13 N -0.358 5.358 14 C 0.046 3.954 15 H 0.073 0.927 16 C -0.201 4.201 17 C 0.058 3.942 18 H 0.080 0.920 19 C -0.213 4.213 20 N -0.372 5.372 21 C -0.366 4.366 22 H 0.099 0.901 23 C -0.269 4.269 24 N -0.622 5.622 25 Si 0.801 3.199 26 H -0.203 1.203 27 H -0.228 1.228 28 H -0.204 1.204 29 C -0.178 4.178 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.254 0.746 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.096 0.904 49 H 0.202 0.798 50 H 0.058 0.942 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.804 -4.862 22.568 31.755 hybrid contribution 0.877 0.169 -1.011 1.349 sum -20.927 -4.693 21.557 30.408 Atomic orbital electron populations 1.21677 0.92678 1.03237 1.02728 1.21506 0.97278 0.93923 1.03315 1.23096 0.77100 0.99896 1.02106 1.86022 1.22947 1.27285 1.88833 1.19121 0.92454 0.84705 0.97048 1.21467 1.00865 0.92201 1.08909 1.21231 0.94684 0.97782 0.96576 1.21215 0.94394 0.98395 1.03269 1.19290 0.94911 0.92426 0.96966 1.20761 0.91569 1.08313 0.92699 1.21112 0.81879 0.74938 0.92103 1.90730 1.56365 1.50952 1.48151 1.45838 1.07225 1.74504 1.08213 1.20833 0.95249 0.96077 0.83284 0.92719 1.21921 1.00546 0.96277 1.01379 1.20587 0.92304 0.94611 0.86674 0.91960 1.22294 1.00548 0.97978 1.00525 1.42482 1.04131 1.88461 1.02086 1.19580 0.84624 1.40494 0.91892 0.90080 1.25546 1.01631 1.04054 0.95704 1.69829 1.34512 1.59643 0.98198 0.85231 0.80452 0.78184 0.75991 1.20315 1.22754 1.20416 1.20404 0.91883 0.98485 1.06982 0.92113 0.90970 0.91545 0.91676 0.90898 0.90750 0.91799 0.83844 0.83408 0.84526 0.84356 0.85106 0.74607 0.93711 0.93305 0.91625 0.93928 0.95104 0.90363 0.79789 0.94246 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 71.98 0.71 -0.45 16 2 C -0.12 -1.51 6.30 30.59 0.19 -1.31 16 3 C 0.05 0.80 4.74 71.98 0.34 1.14 16 4 O -0.34 -7.67 10.14 -92.43 -0.94 -8.61 16 5 C 0.11 2.65 6.69 22.50 0.15 2.80 16 6 C -0.22 -4.30 9.04 22.37 0.20 -4.09 16 7 C -0.08 -1.60 10.04 22.26 0.22 -1.38 16 8 C -0.15 -3.15 9.70 22.28 0.22 -2.94 16 9 C -0.04 -0.77 4.37 -19.88 -0.09 -0.86 16 10 C -0.09 -1.56 5.83 29.10 0.17 -1.39 16 11 C 0.51 13.40 7.79 87.66 0.68 14.09 16 12 O -0.58 -21.60 15.70 -3.04 -0.05 -21.64 16 13 N -0.70 -17.14 4.38 -442.53 -1.94 -19.08 16 14 C 0.15 5.12 2.21 44.99 0.10 5.22 16 15 H 0.05 2.20 7.58 -2.39 -0.02 2.19 16 16 C -0.14 -5.07 9.33 71.98 0.67 -4.40 16 17 C 0.17 6.14 2.52 44.99 0.11 6.26 16 18 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 19 C -0.15 -5.07 9.34 71.98 0.67 -4.40 16 20 N -0.73 -35.86 4.43 -322.94 -1.43 -37.29 16 21 C -0.23 -12.59 9.93 84.04 0.83 -11.75 16 22 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 23 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 24 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 25 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 27 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 28 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 29 C -0.16 -3.84 9.64 22.36 0.22 -3.63 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.89 7.68 -2.39 -0.02 0.88 16 36 H 0.06 0.91 7.65 -2.39 -0.02 0.90 16 37 H 0.14 2.13 6.30 -2.91 -0.02 2.11 16 38 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.14 1.39 8.09 -2.39 -0.02 1.37 16 41 H 0.13 1.48 8.08 -2.39 -0.02 1.46 16 42 H 0.42 6.97 8.39 -92.71 -0.78 6.19 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 2.03 7.44 -2.39 -0.02 2.01 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.08 1.90 7.44 -2.38 -0.02 1.89 16 49 H 0.37 20.21 7.58 -92.71 -0.70 19.50 16 50 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 51 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -74.71 419.34 3.27 -71.44 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: -0.56 Total: 37.85 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 5.88 Total: -11.00 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -3.09 Total: -115.78 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.98 Total: -30.25 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -74.71 3.27 -71.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282217447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.739 kcal (2) G-P(sol) polarization free energy of solvation -74.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds