Wall clock time and date at job start Tue Mar 31 2020 19:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47197 * 2 1 4 4 O 1.21282 * 119.99737 * 359.73054 * 3 2 1 5 5 N 1.34773 * 120.00189 * 180.02562 * 3 2 1 6 6 C 1.46496 * 119.99887 * 179.72852 * 5 3 2 7 7 C 1.53002 * 109.47237 * 180.02562 * 6 5 3 8 8 H 1.09002 * 109.47259 * 295.00617 * 7 6 5 9 9 N 1.46903 * 109.46852 * 54.99552 * 7 6 5 10 10 C 1.46900 * 111.00346 * 205.00036 * 9 7 6 11 11 C 1.50698 * 109.47349 * 180.02562 * 10 9 7 12 12 C 1.38304 * 119.92435 * 269.72780 * 11 10 9 13 13 C 1.38104 * 120.06335 * 179.72843 * 12 11 10 14 14 C 1.38880 * 119.93142 * 0.56493 * 13 12 11 15 15 O 1.35749 * 120.06770 * 179.68716 * 14 13 12 16 16 C 1.34831 * 116.99785 * 174.49080 * 15 14 13 17 17 H 1.08000 * 120.00344 * 5.05279 * 16 15 14 18 18 C 1.38655 * 120.00148 * 185.05901 * 16 15 14 19 19 N 1.31564 * 119.99598 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00409 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46702 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47425 * 119.99135 * 20 18 16 23 23 H 1.48493 * 109.47222 * 239.99888 * 20 18 16 24 24 C 1.38884 * 119.86215 * 359.70826 * 14 13 12 25 25 C 1.38099 * 119.92912 * 359.97438 * 24 14 13 26 26 C 1.53001 * 109.47575 * 175.00045 * 7 6 5 27 27 C 1.53000 * 109.46710 * 305.00089 * 26 7 6 28 28 C 1.52997 * 109.47104 * 65.00060 * 26 7 6 29 29 H 1.08997 * 109.47684 * 59.99570 * 1 2 3 30 30 H 1.09005 * 109.47260 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46799 * 299.99659 * 1 2 3 32 32 H 1.08999 * 109.46799 * 240.00341 * 2 1 3 33 33 H 1.08995 * 109.47181 * 120.00514 * 2 1 3 34 34 H 0.97002 * 119.99902 * 359.72764 * 5 3 2 35 35 H 1.09007 * 109.47478 * 300.00123 * 6 5 3 36 36 H 1.08998 * 109.47696 * 60.00226 * 6 5 3 37 37 H 1.00906 * 110.99822 * 81.04990 * 9 7 6 38 38 H 1.09007 * 109.46990 * 300.00420 * 10 9 7 39 39 H 1.09007 * 109.46659 * 60.00242 * 10 9 7 40 40 H 1.07996 * 119.97231 * 359.97438 * 12 11 10 41 41 H 1.08003 * 120.03639 * 180.27702 * 13 12 11 42 42 H 0.97000 * 119.99456 * 180.02562 * 19 18 16 43 43 H 1.07999 * 120.03257 * 179.97438 * 24 14 13 44 44 H 1.07997 * 119.96549 * 179.97438 * 25 24 14 45 45 H 1.09001 * 109.47306 * 185.00438 * 26 7 6 46 46 H 1.09001 * 109.47421 * 59.99887 * 27 26 7 47 47 H 1.09002 * 109.46880 * 179.97438 * 27 26 7 48 48 H 1.09004 * 109.47427 * 299.99596 * 27 26 7 49 49 H 1.09000 * 109.47004 * 59.99978 * 28 26 7 50 50 H 1.09002 * 109.47159 * 180.02562 * 28 26 7 51 51 H 1.09001 * 109.46913 * 300.00044 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0049 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0482 -0.0065 7 6 5.3757 3.0483 -0.0065 8 1 5.7391 2.6180 0.9267 9 7 5.8654 2.2489 -1.1375 10 6 7.2127 1.7283 -0.8700 11 6 7.6808 0.9159 -2.0498 12 6 7.4224 -0.4419 -2.0986 13 6 7.8451 -1.1882 -3.1811 14 6 8.5404 -0.5759 -4.2157 15 8 8.9627 -1.3080 -5.2781 16 6 9.5301 -0.6343 -6.2989 17 1 9.7057 0.4279 -6.2136 18 6 9.8881 -1.3051 -7.4584 19 7 9.6745 -2.5991 -7.5622 20 14 10.6734 -0.3717 -8.8730 21 1 10.8035 1.0620 -8.5083 22 1 12.0184 -0.9358 -9.1522 23 1 9.8223 -0.4989 -10.0831 24 6 8.8032 0.7867 -4.1610 25 6 8.3722 1.5287 -3.0790 26 6 5.8857 4.4848 -0.1385 27 6 5.2756 5.1300 -1.3844 28 6 5.4810 5.2855 1.1008 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9878 0.9298 0.0031 35 1 3.4827 3.5581 -0.8990 36 1 3.4820 3.5661 0.8809 37 1 5.8477 2.7838 -1.9929 38 1 7.8980 2.5602 -0.7073 39 1 7.1888 1.0980 0.0190 40 1 6.8861 -0.9185 -1.2914 41 1 7.6392 -2.2476 -3.2209 42 1 9.9252 -3.0685 -8.3732 43 1 9.3441 1.2655 -4.9639 44 1 8.5766 2.5882 -3.0356 45 1 6.9720 4.4779 -0.2278 46 1 4.1893 5.1369 -1.2951 47 1 5.6386 6.1536 -1.4782 48 1 5.5640 4.5596 -2.2673 49 1 5.9156 4.8258 1.9884 50 1 5.8439 6.3090 1.0066 51 1 4.3946 5.2924 1.1901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482509584.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:24 Heat of formation + Delta-G solvation = -59.918403 kcal Electronic energy + Delta-G solvation = -28527.923788 eV Core-core repulsion = 24620.130803 eV Total energy + Delta-G solvation = -3907.792985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.97072 -39.16765 -38.46812 -36.67958 -34.27474 -33.71625 -32.87923 -32.27115 -30.22124 -29.81909 -27.97892 -27.47272 -25.62627 -24.74635 -23.70841 -23.02716 -22.00107 -20.46799 -20.43149 -19.51706 -18.01876 -17.22360 -17.02582 -16.66807 -16.02216 -15.41252 -15.17575 -14.98659 -14.60667 -14.57325 -14.33340 -13.98553 -13.77854 -13.64297 -13.58490 -13.39120 -13.09447 -12.76077 -12.73691 -12.63622 -12.41190 -12.31058 -12.02624 -11.89562 -11.81824 -11.67247 -11.36127 -11.31330 -11.29116 -11.10390 -10.90376 -10.78396 -10.65128 -10.53401 -10.43703 -9.89581 -9.36951 -9.04452 -8.87574 -8.45613 -8.21169 -7.22451 -6.48687 -4.07528 2.18556 2.23454 2.61872 3.09335 3.11225 3.16604 3.17149 3.93378 4.08738 4.46800 4.49868 4.61389 4.70992 4.73376 4.93432 4.94865 4.98153 5.06194 5.08266 5.22059 5.25617 5.29156 5.37636 5.39395 5.43135 5.54160 5.58641 5.61483 5.64370 5.70596 5.74882 5.75760 5.78148 5.80743 5.84628 5.99022 6.03288 6.05052 6.17441 6.38637 6.42870 6.66308 6.84875 6.94048 7.02956 7.22438 7.28010 7.38734 7.41817 7.52342 7.79022 7.96437 8.21659 8.97156 9.67047 10.69365 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011690 B = 0.002421 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.588215 B =11562.896781 C =12918.188165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.146 4.146 3 C 0.508 3.492 4 O -0.553 6.553 5 N -0.715 5.715 6 C 0.128 3.872 7 C 0.076 3.924 8 H 0.083 0.917 9 N -0.679 5.679 10 C 0.118 3.882 11 C -0.186 4.186 12 C -0.052 4.052 13 C -0.195 4.195 14 C 0.156 3.844 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.275 1.275 24 C -0.234 4.234 25 C -0.065 4.065 26 C -0.122 4.122 27 C -0.155 4.155 28 C -0.148 4.148 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.408 0.592 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.346 0.654 38 H 0.029 0.971 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.125 0.875 44 H 0.101 0.899 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.055 0.945 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.569 10.394 16.695 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.186 4.186 3 C 0.295 3.705 4 O -0.432 6.432 5 N -0.366 5.366 6 C 0.004 3.996 7 C -0.035 4.035 8 H 0.101 0.899 9 N -0.312 5.312 10 C -0.010 4.010 11 C -0.187 4.187 12 C -0.071 4.071 13 C -0.214 4.214 14 C 0.102 3.898 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.254 4.254 25 C -0.084 4.084 26 C -0.143 4.143 27 C -0.212 4.212 28 C -0.205 4.205 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.243 0.757 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.167 0.833 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.143 0.857 44 H 0.120 0.880 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.397 10.044 16.657 22.055 hybrid contribution 1.443 0.991 -0.946 1.990 sum -8.954 11.035 15.711 21.184 Atomic orbital electron populations 1.21513 0.93237 1.01444 1.03153 1.21624 0.98466 0.94003 1.04471 1.20780 0.82217 0.91790 0.75724 1.90677 1.55547 1.46680 1.50257 1.45863 1.06910 1.09232 1.74643 1.21447 0.92806 0.83358 1.01994 1.21886 0.94053 0.91845 0.95672 0.89923 1.60735 1.25230 1.40446 1.04756 1.20658 0.87691 0.96326 0.96335 1.19082 1.07461 0.94178 0.97998 1.20433 0.97295 0.92975 0.96392 1.20227 1.05834 1.00097 0.95231 1.19409 0.91342 0.90220 0.88814 1.83980 1.66349 1.34323 1.23428 1.21367 1.39135 0.93838 0.92440 0.89046 1.25295 0.97368 0.95957 0.97906 1.70050 1.44228 1.07538 1.27853 0.85650 0.78692 0.79105 0.80001 1.19129 1.20122 1.20101 1.21121 1.08765 0.94481 1.01009 1.20577 0.96680 0.97932 0.93207 1.21732 1.00804 0.95550 0.96220 1.21962 1.01440 1.00645 0.97200 1.21859 1.01782 0.99868 0.97039 0.92036 0.92185 0.92234 0.88667 0.89147 0.75659 0.91232 0.91543 0.83296 0.95307 0.91186 0.87128 0.86612 0.92036 0.85699 0.88041 0.90745 0.91858 0.92452 0.92304 0.92643 0.92621 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.20 37.16 0.34 -0.83 16 2 C -0.15 -1.21 6.42 -27.88 -0.18 -1.39 16 3 C 0.51 5.77 7.83 -10.99 -0.09 5.69 16 4 O -0.55 -8.35 15.98 5.56 0.09 -8.26 16 5 N -0.71 -6.98 5.39 -60.30 -0.32 -7.31 16 6 C 0.13 1.22 4.67 -4.04 -0.02 1.20 16 7 C 0.08 0.63 1.97 -67.71 -0.13 0.50 16 8 H 0.08 0.66 7.80 -51.93 -0.40 0.26 16 9 N -0.68 -6.92 5.68 -107.98 -0.61 -7.53 16 10 C 0.12 1.34 5.61 -4.98 -0.03 1.31 16 11 C -0.19 -2.85 5.40 -104.58 -0.56 -3.41 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 13 C -0.19 -3.94 9.99 -39.39 -0.39 -4.33 16 14 C 0.16 3.67 6.65 -39.10 -0.26 3.41 16 15 O -0.18 -4.99 9.76 0.05 0.00 -4.99 16 16 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 17 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 18 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -25.04 13.67 55.48 0.76 -24.28 16 20 Si 0.94 20.30 29.55 -169.99 -5.02 15.27 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 24 C -0.23 -4.91 9.17 -39.39 -0.36 -5.27 16 25 C -0.07 -1.11 9.69 -39.61 -0.38 -1.50 16 26 C -0.12 -0.94 2.79 -90.62 -0.25 -1.20 16 27 C -0.16 -1.26 8.52 37.16 0.32 -0.94 16 28 C -0.15 -1.01 8.95 37.16 0.33 -0.68 16 29 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.41 3.53 8.14 -40.82 -0.33 3.19 16 35 H 0.07 0.76 6.06 -51.93 -0.31 0.45 16 36 H 0.07 0.64 6.81 -51.93 -0.35 0.29 16 37 H 0.35 3.85 6.55 -39.29 -0.26 3.60 16 38 H 0.03 0.32 7.30 -51.93 -0.38 -0.06 16 39 H 0.07 0.73 8.00 -51.93 -0.42 0.32 16 40 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 42 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 44 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.07 0.62 7.35 -51.93 -0.38 0.23 16 46 H 0.06 0.53 6.23 -51.93 -0.32 0.21 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 49 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.06 0.42 6.68 -51.93 -0.35 0.07 16 LS Contribution 408.61 15.07 6.16 6.16 Total: -1.00 -31.52 408.61 -9.01 -40.52 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -8.19 Total: 8.62 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -1.86 Total: -18.21 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: -0.18 Total: -39.12 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.52 -9.01 -40.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482509584.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.396 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds