Wall clock time and date at job start Tue Mar 31 2020 19:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47231 * 42.44055 * 3 2 1 5 5 C 1.42902 * 113.99933 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47008 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47114 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99839 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00205 * 180.02562 * 7 6 5 10 10 C 1.46926 * 120.62819 * 359.97438 * 9 7 6 11 11 C 1.53198 * 108.77416 * 233.62895 * 10 9 7 12 12 C 1.53040 * 109.30924 * 305.36672 * 11 10 9 13 13 C 1.53037 * 109.54181 * 61.36466 * 12 11 10 14 14 H 1.09004 * 109.49998 * 58.58381 * 13 12 11 15 15 C 1.52995 * 109.49812 * 178.68183 * 13 12 11 16 16 H 1.08996 * 110.64173 * 60.54004 * 15 13 12 17 17 C 1.55153 * 110.71981 * 297.39517 * 15 13 12 18 18 C 1.54911 * 101.58300 * 206.13302 * 17 15 13 19 19 N 1.47433 * 104.83101 * 37.01269 * 18 17 15 20 20 C 1.36929 * 125.64991 * 155.90797 * 19 18 17 21 21 H 1.08001 * 120.00468 * 179.97438 * 20 19 18 22 22 C 1.38817 * 120.00250 * 359.97438 * 20 19 18 23 23 N 1.31623 * 119.99832 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00201 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46905 * 60.00232 * 24 22 20 26 26 H 1.48497 * 109.47077 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47043 * 300.00363 * 24 22 20 28 28 C 1.47315 * 108.73237 * 335.71685 * 19 18 17 29 29 C 1.46920 * 120.63229 * 179.97438 * 9 7 6 30 30 H 4.38448 * 5.44436 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.47280 * 282.43390 * 3 2 1 32 32 H 1.09001 * 109.47051 * 162.43988 * 3 2 1 33 33 H 1.09004 * 109.47221 * 59.99672 * 5 4 3 34 34 H 1.08994 * 109.47270 * 299.99685 * 5 4 3 35 35 H 1.09004 * 109.46932 * 60.00066 * 6 5 4 36 36 H 1.09002 * 109.47530 * 299.99969 * 6 5 4 37 37 H 1.08998 * 109.58617 * 353.41260 * 10 9 7 38 38 H 1.08996 * 109.58899 * 113.69860 * 10 9 7 39 39 H 1.09003 * 109.49190 * 65.31478 * 11 10 9 40 40 H 1.08991 * 109.49689 * 185.40871 * 11 10 9 41 41 H 1.09000 * 109.45820 * 301.33998 * 12 11 10 42 42 H 1.09003 * 109.45295 * 181.38218 * 12 11 10 43 43 H 1.08998 * 111.00873 * 324.20577 * 17 15 13 44 44 H 1.08998 * 111.00536 * 88.02271 * 17 15 13 45 45 H 1.09002 * 110.36910 * 155.84328 * 18 17 15 46 46 H 1.09000 * 110.37330 * 278.17254 * 18 17 15 47 47 H 0.96998 * 120.00445 * 180.02562 * 23 22 20 48 48 H 1.09003 * 110.05996 * 241.87448 * 28 19 18 49 49 H 1.08998 * 109.85584 * 120.61312 * 28 19 18 50 50 H 1.08998 * 109.58534 * 6.58582 * 29 9 7 51 51 H 1.08995 * 109.70522 * 246.22724 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -0.9934 -0.9092 5 6 4.5474 -1.0756 -0.9857 6 6 4.9424 -2.1668 -1.9827 7 6 6.4447 -2.2539 -2.0630 8 8 7.1318 -1.5163 -1.3888 9 7 7.0248 -3.1516 -2.8841 10 6 6.2058 -4.0524 -3.7066 11 6 6.6459 -5.4962 -3.4444 12 6 8.1519 -5.6183 -3.6875 13 6 8.9027 -4.7011 -2.7194 14 1 8.6567 -4.9755 -1.6935 15 6 10.4093 -4.8484 -2.9409 16 1 10.6772 -4.5676 -3.9594 17 6 10.8705 -6.2971 -2.6315 18 6 12.3546 -6.0755 -2.2465 19 7 12.3660 -4.8009 -1.5057 20 6 13.3095 -4.4184 -0.5901 21 1 13.2286 -3.4596 -0.0996 22 6 14.3703 -5.2629 -0.2923 23 7 14.4693 -6.4311 -0.8905 24 14 15.6578 -4.7407 0.9563 25 1 15.0066 -4.5057 2.2700 26 1 16.6768 -5.8121 1.0941 27 1 16.3132 -3.4896 0.4978 28 6 11.1969 -4.0044 -1.9167 29 6 8.4881 -3.2481 -2.9736 30 1 -1.0499 -0.0001 -0.0003 31 1 3.0094 -0.2204 1.0035 32 1 3.0088 0.9806 -0.3101 33 1 4.9506 -1.3188 -0.0027 34 1 4.9493 -0.1180 -1.3165 35 1 4.5391 -1.9239 -2.9659 36 1 4.5405 -3.1244 -1.6516 37 1 5.1553 -3.9365 -3.4401 38 1 6.3441 -3.8117 -4.7606 39 1 6.4212 -5.7631 -2.4117 40 1 6.1130 -6.1670 -4.1182 41 1 8.3789 -5.3274 -4.7131 42 1 8.4633 -6.6502 -3.5254 43 1 10.3088 -6.7162 -1.7967 44 1 10.7858 -6.9311 -3.5141 45 1 12.7067 -6.8873 -1.6099 46 1 12.9716 -5.9995 -3.1418 47 1 15.2102 -7.0215 -0.6822 48 1 11.5230 -3.0719 -2.3775 49 1 10.5700 -3.7928 -1.0505 50 1 8.9435 -2.6015 -2.2235 51 1 8.8164 -2.9428 -3.9671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570550733.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:43 Heat of formation + Delta-G solvation = -8.231653 kcal Electronic energy + Delta-G solvation = -28752.567891 eV Core-core repulsion = 24847.016211 eV Total energy + Delta-G solvation = -3905.551680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.47810 -38.70369 -38.09601 -36.67016 -33.93532 -33.66628 -32.27735 -31.94486 -30.90360 -29.02830 -27.49465 -27.03690 -25.69189 -24.59195 -23.52736 -22.67516 -20.87475 -19.96622 -19.36845 -19.17583 -18.62460 -17.73921 -16.81629 -16.78647 -16.41188 -15.91140 -15.57931 -15.20178 -14.99367 -14.53651 -14.50353 -14.03015 -13.85189 -13.75214 -13.40232 -13.06439 -12.99093 -12.92207 -12.51710 -12.23007 -12.03031 -11.86460 -11.66550 -11.54340 -11.21268 -11.06329 -10.98231 -10.93402 -10.84167 -10.81844 -10.72628 -10.64603 -10.10213 -10.08025 -9.94759 -9.89194 -9.73002 -9.68834 -9.41271 -8.69523 -8.58582 -6.75878 -5.59140 -2.99998 2.04838 2.39350 2.47638 2.79788 3.44673 3.48354 3.49978 3.51499 4.09106 4.36358 4.51527 4.57689 4.67347 4.75173 4.78680 4.84814 4.87957 4.97850 4.98807 5.10932 5.15301 5.30535 5.41367 5.44039 5.47969 5.50231 5.51392 5.55866 5.64383 5.68651 5.71753 5.82495 5.92543 5.97598 6.05329 6.09447 6.29543 6.32793 6.45390 6.50722 6.66242 6.69323 6.69876 6.84203 7.05089 7.14672 7.26103 7.58175 7.69358 7.91739 8.02312 8.42952 9.29052 9.89952 10.55704 11.44732 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015168 B = 0.002162 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.532825 B =12949.720919 C =14380.056764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.192 4.192 3 C 0.173 3.827 4 O -0.387 6.387 5 C 0.077 3.923 6 C -0.138 4.138 7 C 0.518 3.482 8 O -0.539 6.539 9 N -0.609 5.609 10 C 0.105 3.895 11 C -0.135 4.135 12 C -0.115 4.115 13 C -0.086 4.086 14 H 0.074 0.926 15 C -0.092 4.092 16 H 0.070 0.930 17 C -0.135 4.135 18 C 0.151 3.849 19 N -0.605 5.605 20 C -0.219 4.219 21 H 0.076 0.924 22 C -0.014 4.014 23 N -0.924 5.924 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.140 3.860 29 C 0.115 3.885 30 H 0.222 0.778 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.105 0.895 46 H 0.009 0.991 47 H 0.251 0.749 48 H 0.019 0.981 49 H 0.024 0.976 50 H 0.097 0.903 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.047 6.119 -6.163 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.192 4.192 3 C 0.098 3.902 4 O -0.307 6.307 5 C 0.000 4.000 6 C -0.178 4.178 7 C 0.305 3.695 8 O -0.416 6.416 9 N -0.342 5.342 10 C -0.018 4.018 11 C -0.173 4.173 12 C -0.152 4.152 13 C -0.106 4.106 14 H 0.093 0.907 15 C -0.112 4.112 16 H 0.088 0.912 17 C -0.174 4.174 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.348 4.348 21 H 0.094 0.906 22 C -0.209 4.209 23 N -0.573 5.573 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 C 0.014 3.986 29 C -0.007 4.007 30 H 0.239 0.761 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.027 0.973 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.041 0.959 50 H 0.115 0.885 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.579 6.331 -5.811 26.984 hybrid contribution 0.650 0.354 0.613 0.961 sum -24.930 6.684 -5.198 26.328 Atomic orbital electron populations 1.24977 0.95900 0.99100 0.99412 1.22575 0.93916 1.01416 1.01273 1.19059 0.84579 0.92485 0.94098 1.87851 1.21792 1.57404 1.63658 1.22186 0.79631 0.98717 0.99440 1.21485 0.92906 1.01384 1.01999 1.20320 0.89901 0.80070 0.79172 1.90739 1.65215 1.42377 1.43309 1.48123 1.07637 1.36021 1.42441 1.21807 0.94985 0.89797 0.95236 1.21932 0.97342 0.95544 1.02532 1.21584 0.93591 1.00610 0.99436 1.21512 0.95244 0.93800 1.00046 0.90730 1.22140 0.91976 0.97796 0.99281 0.91189 1.23018 1.00542 0.94285 0.99568 1.21917 0.89122 0.91065 0.95225 1.44575 1.25384 1.16184 1.46941 1.19059 1.00794 1.01068 1.13880 0.90625 1.24776 0.98873 0.96807 1.00402 1.69797 1.32269 1.09751 1.45488 0.86158 0.81105 0.77259 0.81035 1.21211 1.21611 1.21273 1.21394 0.89269 0.93534 0.94424 1.21789 0.78257 0.97912 1.02748 0.76149 0.90518 0.90577 0.91822 0.91914 0.88060 0.87962 0.89815 0.91132 0.91429 0.90721 0.91864 0.91040 0.92328 0.92599 0.87758 0.97261 0.93812 0.96326 0.95852 0.88505 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 19.25 29.55 0.57 -0.72 16 2 C -0.19 -1.71 13.73 -37.12 -0.51 -2.22 16 3 C 0.17 1.39 6.41 34.37 0.22 1.61 16 4 O -0.39 -3.80 10.30 -35.23 -0.36 -4.16 16 5 C 0.08 0.72 5.23 37.16 0.19 0.91 16 6 C -0.14 -1.19 4.42 -27.88 -0.12 -1.32 16 7 C 0.52 6.29 7.70 -10.98 -0.08 6.21 16 8 O -0.54 -8.74 15.39 5.56 0.09 -8.65 16 9 N -0.61 -6.80 2.97 -172.76 -0.51 -7.31 16 10 C 0.10 0.81 6.34 -3.71 -0.02 0.79 16 11 C -0.14 -1.11 6.08 -26.61 -0.16 -1.28 16 12 C -0.11 -1.21 4.99 -26.69 -0.13 -1.35 16 13 C -0.09 -1.18 1.72 -90.49 -0.16 -1.33 16 14 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 15 C -0.09 -1.57 2.48 -88.79 -0.22 -1.79 16 16 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 17 C -0.14 -2.52 5.50 -24.58 -0.14 -2.66 16 18 C 0.15 3.74 5.89 -2.52 -0.01 3.72 16 19 N -0.60 -15.97 3.40 -169.83 -0.58 -16.54 16 20 C -0.22 -6.33 10.28 -15.06 -0.15 -6.48 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 22 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 23 N -0.92 -27.44 10.09 55.49 0.56 -26.88 16 24 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.14 3.00 6.04 -2.90 -0.02 2.98 16 29 C 0.11 1.51 5.44 -3.70 -0.02 1.49 16 30 H 0.22 0.76 7.80 -54.10 -0.42 0.34 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.10 0.71 7.94 -51.93 -0.41 0.29 16 36 H 0.10 0.76 7.69 -51.93 -0.40 0.36 16 37 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.79 7.28 -51.93 -0.38 0.41 16 43 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 44 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 45 H 0.10 2.89 5.88 -51.93 -0.31 2.59 16 46 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.02 0.52 7.68 -51.93 -0.40 0.12 16 50 H 0.10 1.54 6.38 -51.93 -0.33 1.21 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 404.59 15.07 6.10 6.10 Total: -1.00 -34.31 404.59 -9.43 -43.75 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.83 Total: -2.01 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -0.87 Total: -1.90 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.53 Total: -50.73 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.28 Total: -12.82 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.31 -9.43 -43.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570550733.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.513 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds