Wall clock time and date at job start Tue Mar 31 2020 19:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38131 * 119.94707 * 179.69741 * 6 5 4 8 8 C 1.38290 * 120.04957 * 0.59675 * 7 6 5 9 9 C 1.38250 * 120.11062 * 359.67603 * 8 7 6 10 10 C 1.50704 * 119.96871 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47316 * 270.02249 * 10 9 8 12 12 O 1.21283 * 119.99814 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99654 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99984 * 180.02562 * 13 11 10 16 16 C 1.53001 * 109.47183 * 89.99718 * 15 13 11 17 17 H 1.09000 * 109.47167 * 295.00042 * 16 15 13 18 18 C 1.52999 * 109.46912 * 174.99728 * 16 15 13 19 19 N 1.46500 * 109.47124 * 55.00083 * 16 15 13 20 20 C 1.36929 * 119.99946 * 204.99993 * 19 16 15 21 21 H 1.08003 * 120.00500 * 359.97438 * 20 19 16 22 22 C 1.38816 * 119.99946 * 179.97438 * 20 19 16 23 23 N 1.31620 * 119.99835 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99946 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47644 * 89.99923 * 24 22 20 26 26 H 1.48501 * 109.46988 * 210.00238 * 24 22 20 27 27 H 1.48504 * 109.46933 * 329.99491 * 24 22 20 28 28 C 1.38162 * 120.05723 * 0.02573 * 9 8 7 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 32 32 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 33 33 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 36 36 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 37 37 H 1.07993 * 119.97567 * 180.29505 * 7 6 5 38 38 H 1.07997 * 119.94208 * 179.70200 * 8 7 6 39 39 H 1.09003 * 109.46632 * 30.02434 * 10 9 8 40 40 H 1.08996 * 109.46429 * 150.02007 * 10 9 8 41 41 H 1.09001 * 109.47208 * 90.00601 * 14 13 11 42 42 H 1.09004 * 109.46875 * 210.00361 * 14 13 11 43 43 H 1.08999 * 109.47342 * 329.99830 * 14 13 11 44 44 H 1.09002 * 109.46617 * 209.99862 * 15 13 11 45 45 H 1.08996 * 109.47031 * 329.99907 * 15 13 11 46 46 H 1.09000 * 109.47461 * 300.00133 * 18 16 15 47 47 H 1.09000 * 109.46987 * 60.00204 * 18 16 15 48 48 H 1.08999 * 109.47086 * 179.97438 * 18 16 15 49 49 H 0.97007 * 120.00164 * 24.99491 * 19 16 15 50 50 H 0.97003 * 119.99662 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.02891 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0472 -0.0013 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0029 11 6 8.1020 4.0676 -1.4238 12 8 7.3147 4.0249 -2.3454 13 7 9.4251 4.1384 -1.6706 14 6 10.3761 4.1894 -0.5574 15 6 9.9122 4.1654 -3.0520 16 6 10.0048 5.6153 -3.5318 17 1 9.0060 6.0500 -3.5697 18 6 10.6302 5.6514 -4.9277 19 7 10.8374 6.3845 -2.6037 20 6 10.6729 7.7399 -2.4989 21 1 9.9297 8.2419 -3.1007 22 6 11.4614 8.4687 -1.6191 23 7 12.3668 7.8569 -0.8854 24 14 11.2365 10.3176 -1.4756 25 1 10.2281 10.6138 -0.4265 26 1 12.5309 10.9467 -1.1096 27 1 10.7719 10.8622 -2.7767 28 6 5.4712 2.7271 -0.0018 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.2529 3.7627 -0.0114 37 1 3.3742 5.9537 -0.0009 38 1 5.8324 6.0804 -0.0027 39 1 7.9160 4.9486 0.5110 40 1 8.0117 3.1711 0.5107 41 1 10.6669 3.1759 -0.2812 42 1 11.2598 4.7513 -0.8599 43 1 9.9092 4.6791 0.2972 44 1 10.8984 3.7035 -3.0985 45 1 9.2224 3.6145 -3.6913 46 1 11.6290 5.2167 -4.8899 47 1 10.0107 5.0791 -5.6182 48 1 10.6958 6.6843 -5.2698 49 1 11.5051 5.9338 -2.0634 50 1 12.9175 8.3662 -0.2703 51 1 6.0606 1.8222 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571412771.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:03 Heat of formation + Delta-G solvation = -44.171334 kcal Electronic energy + Delta-G solvation = -28787.374056 eV Core-core repulsion = 24880.263915 eV Total energy + Delta-G solvation = -3907.110141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33950 -39.48220 -37.70860 -36.20650 -34.26341 -34.15977 -32.64398 -31.90599 -30.17899 -28.91442 -27.90303 -26.82403 -26.59907 -25.06604 -23.55862 -22.69087 -22.16802 -21.08007 -20.11822 -18.84353 -17.70911 -17.27602 -16.64163 -16.48640 -16.27600 -16.00763 -15.66282 -15.17586 -14.63010 -14.41234 -14.27523 -14.00056 -13.80002 -13.46466 -13.29895 -13.11271 -12.70513 -12.57234 -12.46773 -12.45570 -12.25618 -12.07525 -11.84199 -11.69115 -11.54328 -11.50092 -11.46267 -11.27843 -11.22668 -10.85630 -10.83858 -10.79615 -10.67754 -10.33962 -10.05542 -9.64461 -9.44755 -8.92956 -8.75081 -8.15702 -8.09125 -6.94097 -5.78158 -3.04424 1.33000 1.51559 2.99813 3.06206 3.42171 3.44883 3.48784 3.49959 3.87362 4.49751 4.51097 4.59562 4.72340 4.81384 4.84201 4.98800 5.00573 5.04346 5.09537 5.22444 5.27885 5.40553 5.48436 5.52781 5.55239 5.56345 5.60733 5.65226 5.67176 5.70242 5.71963 5.82779 5.90197 5.93539 6.06576 6.16891 6.29632 6.30298 6.34506 6.39302 6.46818 6.66594 6.72927 6.76708 6.85815 6.91180 7.19805 7.38018 7.71623 7.84305 8.42006 8.61479 9.52922 10.09413 10.45432 11.44861 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017012 B = 0.002379 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.521203 B =11765.786214 C =12467.399907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.318 6.318 5 C 0.126 3.874 6 C -0.212 4.212 7 C -0.080 4.080 8 C -0.138 4.138 9 C -0.018 4.018 10 C -0.104 4.104 11 C 0.518 3.482 12 O -0.543 6.543 13 N -0.596 5.596 14 C 0.080 3.920 15 C 0.111 3.889 16 C 0.154 3.846 17 H 0.051 0.949 18 C -0.162 4.162 19 N -0.720 5.720 20 C -0.229 4.229 21 H 0.068 0.932 22 C -0.015 4.015 23 N -0.936 5.936 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 C -0.138 4.138 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.038 0.962 48 H 0.055 0.945 49 H 0.381 0.619 50 H 0.254 0.746 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.313 -14.822 4.620 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.232 6.232 5 C 0.082 3.918 6 C -0.231 4.231 7 C -0.098 4.098 8 C -0.157 4.157 9 C -0.019 4.019 10 C -0.144 4.144 11 C 0.306 3.694 12 O -0.420 6.420 13 N -0.328 5.328 14 C -0.064 4.064 15 C -0.012 4.012 16 C 0.044 3.956 17 H 0.069 0.931 18 C -0.223 4.223 19 N -0.363 5.363 20 C -0.360 4.360 21 H 0.086 0.914 22 C -0.210 4.210 23 N -0.585 5.585 24 Si 0.735 3.265 25 H -0.219 1.219 26 H -0.219 1.219 27 H -0.209 1.209 28 C -0.156 4.156 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.216 0.784 50 H 0.063 0.937 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.680 -14.869 4.123 23.466 hybrid contribution 0.141 1.290 0.289 1.329 sum -17.539 -13.579 4.411 22.616 Atomic orbital electron populations 1.21689 0.94320 1.02482 1.02210 1.21482 0.95961 0.94982 1.03732 1.22833 0.78811 0.98623 1.01345 1.86028 1.20995 1.27252 1.88945 1.18843 0.92079 0.83900 0.97020 1.21152 0.99619 0.92511 1.09824 1.20868 0.94498 0.96877 0.97542 1.20981 0.93768 0.98205 1.02709 1.19109 0.93999 0.92428 0.96347 1.20739 0.92280 1.05370 0.95988 1.20265 0.82075 0.76374 0.90719 1.90681 1.54822 1.50266 1.46261 1.47598 1.05665 1.72062 1.07442 1.21906 0.94754 1.00370 0.89329 1.21815 0.99044 0.98368 0.82006 1.20661 0.95128 0.90217 0.89635 0.93086 1.22368 1.00056 1.01426 0.98426 1.42473 1.42410 1.04710 1.46701 1.19237 1.15051 0.83826 1.17900 0.91440 1.24661 0.98990 0.97738 0.99648 1.69626 1.25315 1.34506 1.29085 0.86231 0.76767 0.85843 0.77624 1.21878 1.21886 1.20918 1.20171 0.91254 0.97946 1.06269 0.91756 0.92393 0.92349 0.90793 0.90859 0.92172 0.92115 0.85920 0.85859 0.85724 0.87358 0.88142 0.93643 0.89018 0.91256 0.91076 0.90265 0.93489 0.94335 0.92619 0.78366 0.93651 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.15 0.37 -0.40 16 2 C -0.12 -0.87 6.30 -26.74 -0.17 -1.03 16 3 C 0.06 0.52 4.74 37.16 0.18 0.70 16 4 O -0.32 -3.94 10.14 -19.43 -0.20 -4.14 16 5 C 0.13 1.70 6.69 -39.22 -0.26 1.44 16 6 C -0.21 -2.60 9.04 -39.43 -0.36 -2.95 16 7 C -0.08 -1.01 10.04 -39.60 -0.40 -1.40 16 8 C -0.14 -1.97 9.70 -39.56 -0.38 -2.36 16 9 C -0.02 -0.26 4.37 -104.64 -0.46 -0.72 16 10 C -0.10 -1.44 4.38 -29.03 -0.13 -1.57 16 11 C 0.52 9.05 7.67 -10.99 -0.08 8.97 16 12 O -0.54 -11.26 15.61 5.55 0.09 -11.17 16 13 N -0.60 -10.11 2.73 -181.57 -0.50 -10.60 16 14 C 0.08 1.21 9.86 59.85 0.59 1.80 16 15 C 0.11 1.93 5.05 -4.04 -0.02 1.91 16 16 C 0.15 3.16 3.20 -67.93 -0.22 2.94 16 17 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 18 C -0.16 -2.99 9.49 37.16 0.35 -2.64 16 19 N -0.72 -17.25 4.56 -53.43 -0.24 -17.50 16 20 C -0.23 -6.22 9.93 -15.06 -0.15 -6.37 16 21 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 22 C -0.02 -0.42 5.50 -17.43 -0.10 -0.51 16 23 N -0.94 -26.83 13.06 55.49 0.72 -26.10 16 24 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 28 C -0.14 -1.95 9.64 -39.43 -0.38 -2.33 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.46 7.68 -51.93 -0.40 0.06 16 35 H 0.06 0.50 7.65 -51.93 -0.40 0.11 16 36 H 0.12 1.19 6.30 -52.48 -0.33 0.86 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.11 1.44 7.35 -51.93 -0.38 1.05 16 40 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 1.64 5.62 -51.93 -0.29 1.35 16 43 H 0.07 1.00 6.44 -51.93 -0.33 0.66 16 44 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 45 H 0.08 1.36 7.42 -51.93 -0.39 0.98 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 49 H 0.38 9.32 5.33 -40.82 -0.22 9.10 16 50 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 51 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 414.05 15.07 6.24 6.24 Total: -1.00 -32.48 414.05 -9.14 -41.61 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -8.61 Total: 9.02 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.61 Total: -4.53 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.01 Total: -54.20 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.11 Total: -15.31 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.48 -9.14 -41.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571412771.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.559 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds