Wall clock time and date at job start Tue Mar 31 2020 19:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38131 * 119.94707 * 179.69741 * 6 5 4 8 8 C 1.38290 * 120.04957 * 0.59675 * 7 6 5 9 9 C 1.38250 * 120.11062 * 359.67603 * 8 7 6 10 10 C 1.50704 * 119.96871 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47316 * 270.02249 * 10 9 8 12 12 O 1.21283 * 119.99814 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99654 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99984 * 180.02562 * 13 11 10 16 16 C 1.53001 * 109.47183 * 89.99718 * 15 13 11 17 17 H 1.09000 * 109.47167 * 295.00042 * 16 15 13 18 18 C 1.52999 * 109.46912 * 174.99728 * 16 15 13 19 19 N 1.46500 * 109.47124 * 55.00083 * 16 15 13 20 20 C 1.36929 * 119.99946 * 204.99993 * 19 16 15 21 21 H 1.08003 * 120.00500 * 359.97438 * 20 19 16 22 22 C 1.38816 * 119.99946 * 179.97438 * 20 19 16 23 23 N 1.31620 * 119.99835 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99946 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47644 * 89.99923 * 24 22 20 26 26 H 1.48501 * 109.46988 * 210.00238 * 24 22 20 27 27 H 1.48504 * 109.46933 * 329.99491 * 24 22 20 28 28 C 1.38162 * 120.05723 * 0.02573 * 9 8 7 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 32 32 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 33 33 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 36 36 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 37 37 H 1.07993 * 119.97567 * 180.29505 * 7 6 5 38 38 H 1.07997 * 119.94208 * 179.70200 * 8 7 6 39 39 H 1.09003 * 109.46632 * 30.02434 * 10 9 8 40 40 H 1.08996 * 109.46429 * 150.02007 * 10 9 8 41 41 H 1.09001 * 109.47208 * 90.00601 * 14 13 11 42 42 H 1.09004 * 109.46875 * 210.00361 * 14 13 11 43 43 H 1.08999 * 109.47342 * 329.99830 * 14 13 11 44 44 H 1.09002 * 109.46617 * 209.99862 * 15 13 11 45 45 H 1.08996 * 109.47031 * 329.99907 * 15 13 11 46 46 H 1.09000 * 109.47461 * 300.00133 * 18 16 15 47 47 H 1.09000 * 109.46987 * 60.00204 * 18 16 15 48 48 H 1.08999 * 109.47086 * 179.97438 * 18 16 15 49 49 H 0.97007 * 120.00164 * 24.99491 * 19 16 15 50 50 H 0.97003 * 119.99662 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.02891 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0472 -0.0013 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0029 11 6 8.1020 4.0676 -1.4238 12 8 7.3147 4.0249 -2.3454 13 7 9.4251 4.1384 -1.6706 14 6 10.3761 4.1894 -0.5574 15 6 9.9122 4.1654 -3.0520 16 6 10.0048 5.6153 -3.5318 17 1 9.0060 6.0500 -3.5697 18 6 10.6302 5.6514 -4.9277 19 7 10.8374 6.3845 -2.6037 20 6 10.6729 7.7399 -2.4989 21 1 9.9297 8.2419 -3.1007 22 6 11.4614 8.4687 -1.6191 23 7 12.3668 7.8569 -0.8854 24 14 11.2365 10.3176 -1.4756 25 1 10.2281 10.6138 -0.4265 26 1 12.5309 10.9467 -1.1096 27 1 10.7719 10.8622 -2.7767 28 6 5.4712 2.7271 -0.0018 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.2529 3.7627 -0.0114 37 1 3.3742 5.9537 -0.0009 38 1 5.8324 6.0804 -0.0027 39 1 7.9160 4.9486 0.5110 40 1 8.0117 3.1711 0.5107 41 1 10.6669 3.1759 -0.2812 42 1 11.2598 4.7513 -0.8599 43 1 9.9092 4.6791 0.2972 44 1 10.8984 3.7035 -3.0985 45 1 9.2224 3.6145 -3.6913 46 1 11.6290 5.2167 -4.8899 47 1 10.0107 5.0791 -5.6182 48 1 10.6958 6.6843 -5.2698 49 1 11.5051 5.9338 -2.0634 50 1 12.9175 8.3662 -0.2703 51 1 6.0606 1.8222 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571412771.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:02 Heat of formation + Delta-G solvation = -61.809597 kcal Electronic energy + Delta-G solvation = -28788.138908 eV Core-core repulsion = 24880.263915 eV Total energy + Delta-G solvation = -3907.874994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.39488 -40.70794 -38.72473 -37.77325 -35.76041 -34.86470 -34.10418 -33.41432 -31.15381 -30.71567 -29.10840 -27.98531 -27.41692 -26.48839 -25.44611 -23.63597 -23.00110 -22.06890 -21.57892 -20.17298 -19.25920 -18.70042 -17.98737 -17.23678 -17.22932 -17.08081 -16.96092 -16.69142 -16.29770 -15.58573 -15.38686 -15.14121 -15.07027 -14.76695 -14.59011 -14.18979 -13.95459 -13.76510 -13.63909 -13.46677 -13.32646 -13.17167 -13.06656 -13.04718 -12.89264 -12.78442 -12.69923 -12.47698 -12.41583 -12.21958 -12.17456 -12.12423 -11.84621 -11.68032 -11.60118 -11.52422 -10.99700 -10.80405 -9.79564 -9.51446 -9.15405 -8.92566 -7.90929 -5.16021 0.31211 0.48851 1.46785 1.47727 1.55277 1.70097 2.13842 2.24069 2.57552 2.81165 3.42500 3.64926 3.77380 3.83650 3.92983 3.94359 3.99624 4.08512 4.13856 4.20056 4.29071 4.33748 4.38195 4.42488 4.48208 4.54100 4.54637 4.63460 4.64929 4.70908 4.75047 4.76784 4.83521 4.91173 4.99977 5.06856 5.11320 5.17421 5.21994 5.26274 5.29663 5.35363 5.40061 5.45446 5.54040 5.63343 5.71270 5.79821 6.31945 6.46542 6.51770 7.26035 7.39827 8.12530 8.41923 9.31376 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017012 B = 0.002379 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.521203 B =11765.786214 C =12467.399907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.051 3.949 4 O -0.332 6.332 5 C 0.118 3.882 6 C -0.212 4.212 7 C -0.082 4.082 8 C -0.161 4.161 9 C -0.031 4.031 10 C -0.097 4.097 11 C 0.512 3.488 12 O -0.581 6.581 13 N -0.599 5.599 14 C 0.082 3.918 15 C 0.117 3.883 16 C 0.153 3.847 17 H 0.020 0.980 18 C -0.153 4.153 19 N -0.723 5.723 20 C -0.233 4.233 21 H 0.058 0.942 22 C -0.064 4.064 23 N -0.958 5.958 24 Si 0.960 3.040 25 H -0.289 1.289 26 H -0.294 1.294 27 H -0.280 1.280 28 C -0.154 4.154 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.065 0.935 48 H 0.035 0.965 49 H 0.379 0.621 50 H 0.251 0.749 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.457 -15.645 5.070 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.024 4.024 4 O -0.247 6.247 5 C 0.073 3.927 6 C -0.230 4.230 7 C -0.100 4.100 8 C -0.180 4.180 9 C -0.032 4.032 10 C -0.136 4.136 11 C 0.301 3.699 12 O -0.462 6.462 13 N -0.330 5.330 14 C -0.061 4.061 15 C -0.007 4.007 16 C 0.043 3.957 17 H 0.038 0.962 18 C -0.213 4.213 19 N -0.366 5.366 20 C -0.365 4.365 21 H 0.076 0.924 22 C -0.257 4.257 23 N -0.608 5.608 24 Si 0.790 3.210 25 H -0.217 1.217 26 H -0.221 1.221 27 H -0.206 1.206 28 C -0.173 4.173 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.148 0.852 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.054 0.946 49 H 0.214 0.786 50 H 0.059 0.941 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.831 -15.710 4.566 24.945 hybrid contribution 0.416 1.489 0.107 1.549 sum -18.415 -14.221 4.673 23.732 Atomic orbital electron populations 1.21679 0.92708 1.03247 1.02704 1.21502 0.97231 0.93792 1.03400 1.23128 0.77031 1.00039 1.02183 1.86020 1.22983 1.26894 1.88763 1.19023 0.92187 0.84756 0.96732 1.21451 1.00967 0.91862 1.08762 1.21177 0.94094 0.98128 0.96572 1.21142 0.94836 0.98044 1.03942 1.19212 0.94284 0.92729 0.96950 1.20742 0.92235 1.06840 0.93771 1.20876 0.81821 0.75369 0.91807 1.90652 1.55723 1.52097 1.47730 1.47736 1.06015 1.71542 1.07694 1.21963 0.93178 1.02246 0.88702 1.21719 1.00315 0.96092 0.82573 1.20762 0.93011 0.91557 0.90328 0.96216 1.22218 1.00911 1.00751 0.97422 1.42522 1.42740 1.03913 1.47422 1.19410 1.14401 0.85399 1.17318 0.92380 1.25275 0.99297 1.01177 0.99948 1.69740 1.25992 1.35454 1.29645 0.85349 0.76383 0.81768 0.77493 1.21673 1.22057 1.20573 1.20325 0.92018 0.98004 1.06939 0.90895 0.91695 0.92055 0.91437 0.90932 0.90867 0.91611 0.83314 0.83537 0.86255 0.86950 0.85232 0.89962 0.91728 0.90698 0.88939 0.89933 0.92565 0.91641 0.94588 0.78584 0.94051 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.50 16 2 C -0.12 -1.53 6.30 30.59 0.19 -1.34 16 3 C 0.05 0.81 4.74 71.98 0.34 1.15 16 4 O -0.33 -7.94 10.14 -92.43 -0.94 -8.87 16 5 C 0.12 3.10 6.69 22.50 0.15 3.25 16 6 C -0.21 -4.88 9.04 22.37 0.20 -4.68 16 7 C -0.08 -1.98 10.04 22.26 0.22 -1.76 16 8 C -0.16 -4.60 9.70 22.29 0.22 -4.38 16 9 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 10 C -0.10 -2.62 4.38 29.10 0.13 -2.49 16 11 C 0.51 17.78 7.67 87.66 0.67 18.45 16 12 O -0.58 -24.42 15.61 -3.04 -0.05 -24.47 16 13 N -0.60 -19.89 2.73 -846.76 -2.31 -22.20 16 14 C 0.08 2.37 9.86 127.77 1.26 3.63 16 15 C 0.12 3.96 5.05 86.38 0.44 4.40 16 16 C 0.15 6.28 3.20 44.99 0.14 6.42 16 17 H 0.02 0.93 8.08 -2.39 -0.02 0.91 16 18 C -0.15 -5.53 9.49 71.98 0.68 -4.84 16 19 N -0.72 -34.91 4.56 -322.94 -1.47 -36.38 16 20 C -0.23 -12.80 9.93 84.04 0.83 -11.97 16 21 H 0.06 3.24 7.83 -2.91 -0.02 3.22 16 22 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 23 N -0.96 -55.07 13.06 21.65 0.28 -54.79 16 24 Si 0.96 45.82 29.55 68.60 2.03 47.85 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 28 C -0.15 -4.32 9.64 22.36 0.22 -4.10 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 0.97 7.68 -2.39 -0.02 0.96 16 35 H 0.07 0.98 7.65 -2.39 -0.02 0.96 16 36 H 0.15 2.52 6.30 -2.91 -0.02 2.50 16 37 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 38 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.11 2.93 7.35 -2.39 -0.02 2.91 16 40 H 0.13 2.67 8.05 -2.39 -0.02 2.65 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 2.27 5.62 -2.39 -0.01 2.26 16 43 H 0.07 2.07 6.44 -2.39 -0.02 2.05 16 44 H 0.09 2.74 8.07 -2.39 -0.02 2.72 16 45 H 0.08 2.77 7.42 -2.39 -0.02 2.75 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 49 H 0.38 18.63 5.33 -92.70 -0.49 18.14 16 50 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 51 H 0.13 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -70.07 414.05 4.74 -65.32 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 0.41 Total: 36.38 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 6.79 Total: -2.85 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -3.50 Total: -113.37 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.98 Total: -33.34 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -70.07 4.74 -65.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571412771.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.515 kcal (2) G-P(sol) polarization free energy of solvation -70.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds