Wall clock time and date at job start Tue Mar 31 2020 19:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 O 1.42893 * 109.47234 * 120.00016 * 2 1 3 5 5 C 1.42904 * 114.00146 * 150.00189 * 4 2 1 6 6 C 1.52997 * 109.47247 * 180.02562 * 5 4 2 7 7 H 1.08994 * 109.47401 * 54.99643 * 6 5 4 8 8 N 1.46908 * 109.46955 * 294.99594 * 6 5 4 9 9 C 1.50707 * 109.47065 * 175.00059 * 6 5 4 10 10 O 1.21284 * 119.99995 * 99.99702 * 9 6 5 11 11 N 1.34775 * 119.99766 * 279.99678 * 9 6 5 12 12 C 1.46497 * 120.00290 * 179.97438 * 11 9 6 13 13 H 1.09002 * 109.47031 * 34.99871 * 12 11 9 14 14 C 1.52992 * 109.47408 * 154.99725 * 12 11 9 15 15 C 1.52997 * 109.47482 * 295.00294 * 14 12 11 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 C 1.50699 * 109.47154 * 275.00360 * 12 11 9 25 25 C 1.38236 * 119.99912 * 319.72339 * 24 12 11 26 26 C 1.38240 * 120.00151 * 179.81152 * 25 24 12 27 27 C 1.38231 * 119.99531 * 0.39579 * 26 25 24 28 28 C 1.38233 * 120.00345 * 359.85881 * 27 26 25 29 29 C 1.38232 * 120.00107 * 359.95306 * 28 27 26 30 30 H 1.09009 * 109.46864 * 299.99622 * 1 2 3 31 31 H 1.08995 * 109.47121 * 59.99571 * 1 2 3 32 32 H 1.09002 * 109.46758 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46904 * 240.00513 * 2 1 3 34 34 H 1.09001 * 109.47158 * 300.00077 * 3 2 1 35 35 H 1.09002 * 109.46877 * 60.00103 * 3 2 1 36 36 H 1.08996 * 109.46987 * 179.97438 * 3 2 1 37 37 H 1.09004 * 109.47140 * 59.99778 * 5 4 2 38 38 H 1.09000 * 109.47059 * 299.99845 * 5 4 2 39 39 H 1.00899 * 111.00106 * 300.00267 * 8 6 5 40 40 H 1.00901 * 110.99727 * 63.95740 * 8 6 5 41 41 H 0.97003 * 119.99861 * 0.02562 * 11 9 6 42 42 H 1.09002 * 109.47103 * 175.00047 * 14 12 11 43 43 H 1.08998 * 109.46862 * 55.00859 * 14 12 11 44 44 H 1.09002 * 109.47153 * 59.99783 * 15 14 12 45 45 H 1.09001 * 109.46832 * 299.99974 * 15 14 12 46 46 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 47 47 H 1.08006 * 119.99710 * 359.97438 * 25 24 12 48 48 H 1.07995 * 120.00176 * 180.22759 * 26 25 24 49 49 H 1.08006 * 119.99475 * 179.83643 * 27 26 25 50 50 H 1.08003 * 120.00170 * 179.97438 * 28 27 26 51 51 H 1.07994 * 120.00242 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2661 -1.3244 0.9886 6 6 3.6756 -2.0091 2.2941 7 1 2.8807 -2.6815 2.6166 8 7 3.9065 -0.9921 3.3288 9 6 4.9411 -2.7968 2.0727 10 8 6.0095 -2.3374 2.4170 11 7 4.8857 -4.0119 1.4923 12 6 6.1159 -4.7775 1.2765 13 1 6.8064 -4.5953 2.1000 14 6 5.7832 -6.2694 1.2105 15 6 5.2503 -6.7337 2.5674 16 6 4.9221 -8.2031 2.5022 17 1 5.0784 -8.7511 1.5848 18 6 4.4232 -8.8480 3.6141 19 7 4.2333 -8.1808 4.7313 20 14 4.0170 -10.6695 3.5333 21 1 4.3191 -11.1843 2.1736 22 1 4.8340 -11.4036 4.5329 23 1 2.5756 -10.8688 3.8296 24 6 6.7546 -4.3474 -0.0189 25 6 5.9676 -4.0930 -1.1265 26 6 6.5531 -3.6947 -2.3138 27 6 7.9263 -3.5587 -2.3956 28 6 8.7137 -3.8182 -1.2895 29 6 8.1279 -4.2127 -0.1012 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 4.0201 -0.5873 0.7124 38 1 3.1810 -2.0706 0.1986 39 1 4.6396 -0.3559 3.0533 40 1 3.0557 -0.4931 3.5416 41 1 4.0312 -4.3792 1.2166 42 1 6.6833 -6.8317 0.9620 43 1 5.0259 -6.4392 0.4452 44 1 4.3502 -6.1714 2.8160 45 1 6.0077 -6.5638 3.3327 46 1 3.8820 -8.6345 5.5134 47 1 4.8950 -4.2029 -1.0636 48 1 5.9380 -3.4924 -3.1780 49 1 8.3839 -3.2500 -3.3239 50 1 9.7866 -3.7123 -1.3536 51 1 8.7430 -4.4151 0.7631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575787783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:55 Heat of formation + Delta-G solvation = -80.194625 kcal Electronic energy + Delta-G solvation = -29297.863963 eV Core-core repulsion = 25389.191734 eV Total energy + Delta-G solvation = -3908.672228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.13915 -39.05846 -38.38348 -35.86198 -34.72431 -33.17974 -32.47829 -31.58640 -30.73629 -30.35957 -28.09807 -27.54269 -26.44933 -24.04983 -23.28698 -22.43255 -21.65927 -21.13059 -20.07386 -19.91721 -17.79857 -16.96461 -16.76729 -16.39676 -15.93784 -15.65102 -15.60208 -15.16877 -14.80514 -14.48003 -14.43929 -14.29238 -13.75158 -13.69344 -13.30414 -13.24932 -13.11483 -12.87027 -12.83121 -12.55834 -12.51994 -12.21754 -12.12057 -11.89936 -11.75203 -11.64218 -11.15987 -11.02728 -10.98184 -10.97218 -10.66650 -10.53213 -10.00623 -9.91655 -9.62060 -9.55858 -9.14816 -8.81206 -8.74246 -8.70781 -8.46626 -8.36416 -6.01021 -4.04441 1.48580 1.53126 2.71488 3.17680 3.29855 3.37846 3.41206 3.62740 3.96154 4.44384 4.49142 4.60286 4.69661 4.80688 4.89057 4.90983 4.95291 4.99825 5.03081 5.09918 5.16656 5.24560 5.25181 5.34580 5.41065 5.47306 5.50581 5.58105 5.59829 5.62115 5.75486 5.82601 5.87513 5.88350 6.08603 6.15197 6.33779 6.52524 6.58943 6.62232 6.72568 6.87099 6.94358 6.96245 7.05381 7.13413 7.47114 7.65174 7.75647 7.79683 7.97815 8.38381 8.48930 9.02849 9.60049 11.09680 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007742 B = 0.003552 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3615.666665 B = 7880.289775 C =10083.589519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 C -0.176 4.176 4 O -0.379 6.379 5 C 0.035 3.965 6 C 0.080 3.920 7 H 0.112 0.888 8 N -0.820 5.820 9 C 0.526 3.474 10 O -0.528 6.528 11 N -0.709 5.709 12 C 0.182 3.818 13 H 0.095 0.905 14 C -0.112 4.112 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.077 4.077 25 C -0.109 4.109 26 C -0.125 4.125 27 C -0.131 4.131 28 C -0.120 4.120 29 C -0.106 4.106 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.347 0.653 40 H 0.352 0.648 41 H 0.401 0.599 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.019 0.981 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.116 0.884 50 H 0.118 0.882 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 17.378 -14.124 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.233 4.233 4 O -0.298 6.298 5 C -0.044 4.044 6 C -0.036 4.036 7 H 0.130 0.870 8 N -0.351 5.351 9 C 0.311 3.689 10 O -0.403 6.403 11 N -0.360 5.360 12 C 0.077 3.923 13 H 0.113 0.887 14 C -0.150 4.150 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.530 5.530 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.079 4.079 25 C -0.127 4.127 26 C -0.143 4.143 27 C -0.149 4.149 28 C -0.139 4.139 29 C -0.124 4.124 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.236 0.764 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.035 0.965 46 H 0.070 0.930 47 H 0.134 0.866 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.137 0.863 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.618 17.072 -13.021 21.531 hybrid contribution -0.816 -0.549 -1.122 1.492 sum -2.434 16.523 -14.143 21.885 Atomic orbital electron populations 1.21865 0.93385 1.02952 1.02499 1.22095 0.95106 0.92344 0.88071 1.22308 1.01543 0.96832 1.02647 1.87884 1.36095 1.70010 1.35835 1.23272 0.86185 0.96461 0.98486 1.21357 0.96331 0.95565 0.90333 0.86972 1.58464 1.13022 1.20294 1.43328 1.20070 0.90060 0.81743 0.77067 1.90672 1.30499 1.69604 1.49546 1.45983 1.10617 1.17952 1.61450 1.20131 0.85941 0.92600 0.93581 0.88729 1.21977 1.01243 0.89779 1.02004 1.19101 0.96361 0.95850 0.89983 1.21248 1.42915 0.94664 0.97306 0.92671 1.25018 0.95734 0.98084 0.95516 1.69980 1.45335 1.35965 1.01715 0.86573 0.77984 0.85613 0.78039 1.19779 1.21033 1.21038 1.20418 0.93862 0.97635 0.95940 1.20900 0.99613 0.99707 0.92525 1.21059 0.94982 1.00640 0.97577 1.21054 0.93988 1.01444 0.98382 1.21087 0.99595 0.99996 0.93176 1.21053 0.94394 0.99021 0.97965 0.91710 0.91302 0.91763 0.92201 0.91632 0.91681 0.92568 0.92829 0.92428 0.83884 0.83381 0.76405 0.91494 0.92577 0.96222 0.96512 0.93017 0.86567 0.86598 0.86629 0.86348 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.56 37.16 0.36 -0.72 16 2 C 0.08 0.68 3.34 -26.73 -0.09 0.59 16 3 C -0.18 -1.29 9.53 37.16 0.35 -0.93 16 4 O -0.38 -3.96 9.65 -35.23 -0.34 -4.30 16 5 C 0.04 0.38 5.32 37.16 0.20 0.58 16 6 C 0.08 1.04 3.45 -68.86 -0.24 0.81 16 7 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 8 N -0.82 -10.70 8.98 -5.65 -0.05 -10.75 16 9 C 0.53 8.46 7.04 -10.98 -0.08 8.39 16 10 O -0.53 -10.26 15.91 5.55 0.09 -10.17 16 11 N -0.71 -10.93 3.78 -54.93 -0.21 -11.14 16 12 C 0.18 3.09 2.17 -69.09 -0.15 2.94 16 13 H 0.09 1.83 7.44 -51.93 -0.39 1.44 16 14 C -0.11 -2.15 4.67 -26.74 -0.12 -2.27 16 15 C 0.02 0.59 4.86 -27.88 -0.14 0.46 16 16 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C -0.08 -1.18 4.91 -104.62 -0.51 -1.69 16 25 C -0.11 -1.47 9.32 -39.58 -0.37 -1.84 16 26 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 27 C -0.13 -1.53 10.05 -39.59 -0.40 -1.92 16 28 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 29 C -0.11 -1.54 9.67 -39.58 -0.38 -1.92 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.47 7.79 -51.93 -0.40 0.06 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 37 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 38 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.35 4.45 8.58 -39.29 -0.34 4.12 16 40 H 0.35 3.95 8.75 -39.29 -0.34 3.60 16 41 H 0.40 5.51 8.60 -40.82 -0.35 5.15 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.50 7.75 -51.93 -0.40 0.10 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.12 1.41 7.73 -52.48 -0.41 1.00 16 48 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 49 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 50 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 51 H 0.12 1.71 8.04 -52.49 -0.42 1.29 16 LS Contribution 423.02 15.07 6.37 6.37 Total: -1.00 -32.61 423.02 -10.10 -42.72 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -8.90 Total: 11.15 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -2.78 Total: -14.46 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.48 Total: -47.68 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.25 Total: -14.47 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -32.61 -10.10 -42.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575787783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.478 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds