Wall clock time and date at job start Tue Mar 31 2020 19:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 O 1.42893 * 109.47234 * 120.00016 * 2 1 3 5 5 C 1.42904 * 114.00146 * 150.00189 * 4 2 1 6 6 C 1.52997 * 109.47247 * 180.02562 * 5 4 2 7 7 H 1.08994 * 109.47401 * 54.99643 * 6 5 4 8 8 N 1.46908 * 109.46955 * 294.99594 * 6 5 4 9 9 C 1.50707 * 109.47065 * 175.00059 * 6 5 4 10 10 O 1.21284 * 119.99995 * 99.99702 * 9 6 5 11 11 N 1.34775 * 119.99766 * 279.99678 * 9 6 5 12 12 C 1.46497 * 120.00290 * 179.97438 * 11 9 6 13 13 H 1.09002 * 109.47031 * 34.99871 * 12 11 9 14 14 C 1.52992 * 109.47408 * 154.99725 * 12 11 9 15 15 C 1.52997 * 109.47482 * 295.00294 * 14 12 11 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 C 1.50699 * 109.47154 * 275.00360 * 12 11 9 25 25 C 1.38236 * 119.99912 * 319.72339 * 24 12 11 26 26 C 1.38240 * 120.00151 * 179.81152 * 25 24 12 27 27 C 1.38231 * 119.99531 * 0.39579 * 26 25 24 28 28 C 1.38233 * 120.00345 * 359.85881 * 27 26 25 29 29 C 1.38232 * 120.00107 * 359.95306 * 28 27 26 30 30 H 1.09009 * 109.46864 * 299.99622 * 1 2 3 31 31 H 1.08995 * 109.47121 * 59.99571 * 1 2 3 32 32 H 1.09002 * 109.46758 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46904 * 240.00513 * 2 1 3 34 34 H 1.09001 * 109.47158 * 300.00077 * 3 2 1 35 35 H 1.09002 * 109.46877 * 60.00103 * 3 2 1 36 36 H 1.08996 * 109.46987 * 179.97438 * 3 2 1 37 37 H 1.09004 * 109.47140 * 59.99778 * 5 4 2 38 38 H 1.09000 * 109.47059 * 299.99845 * 5 4 2 39 39 H 1.00899 * 111.00106 * 300.00267 * 8 6 5 40 40 H 1.00901 * 110.99727 * 63.95740 * 8 6 5 41 41 H 0.97003 * 119.99861 * 0.02562 * 11 9 6 42 42 H 1.09002 * 109.47103 * 175.00047 * 14 12 11 43 43 H 1.08998 * 109.46862 * 55.00859 * 14 12 11 44 44 H 1.09002 * 109.47153 * 59.99783 * 15 14 12 45 45 H 1.09001 * 109.46832 * 299.99974 * 15 14 12 46 46 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 47 47 H 1.08006 * 119.99710 * 359.97438 * 25 24 12 48 48 H 1.07995 * 120.00176 * 180.22759 * 26 25 24 49 49 H 1.08006 * 119.99475 * 179.83643 * 27 26 25 50 50 H 1.08003 * 120.00170 * 179.97438 * 28 27 26 51 51 H 1.07994 * 120.00242 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2661 -1.3244 0.9886 6 6 3.6756 -2.0091 2.2941 7 1 2.8807 -2.6815 2.6166 8 7 3.9065 -0.9921 3.3288 9 6 4.9411 -2.7968 2.0727 10 8 6.0095 -2.3374 2.4170 11 7 4.8857 -4.0119 1.4923 12 6 6.1159 -4.7775 1.2765 13 1 6.8064 -4.5953 2.1000 14 6 5.7832 -6.2694 1.2105 15 6 5.2503 -6.7337 2.5674 16 6 4.9221 -8.2031 2.5022 17 1 5.0784 -8.7511 1.5848 18 6 4.4232 -8.8480 3.6141 19 7 4.2333 -8.1808 4.7313 20 14 4.0170 -10.6695 3.5333 21 1 4.3191 -11.1843 2.1736 22 1 4.8340 -11.4036 4.5329 23 1 2.5756 -10.8688 3.8296 24 6 6.7546 -4.3474 -0.0189 25 6 5.9676 -4.0930 -1.1265 26 6 6.5531 -3.6947 -2.3138 27 6 7.9263 -3.5587 -2.3956 28 6 8.7137 -3.8182 -1.2895 29 6 8.1279 -4.2127 -0.1012 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 4.0201 -0.5873 0.7124 38 1 3.1810 -2.0706 0.1986 39 1 4.6396 -0.3559 3.0533 40 1 3.0557 -0.4931 3.5416 41 1 4.0312 -4.3792 1.2166 42 1 6.6833 -6.8317 0.9620 43 1 5.0259 -6.4392 0.4452 44 1 4.3502 -6.1714 2.8160 45 1 6.0077 -6.5638 3.3327 46 1 3.8820 -8.6345 5.5134 47 1 4.8950 -4.2029 -1.0636 48 1 5.9380 -3.4924 -3.1780 49 1 8.3839 -3.2500 -3.3239 50 1 9.7866 -3.7123 -1.3536 51 1 8.7430 -4.4151 0.7631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575787783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:54 Heat of formation + Delta-G solvation = -101.192742 kcal Electronic energy + Delta-G solvation = -29298.774510 eV Core-core repulsion = 25389.191734 eV Total energy + Delta-G solvation = -3909.582775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.37683 -40.03951 -39.30483 -37.24640 -35.78037 -35.14773 -33.22750 -33.03104 -31.87213 -31.70627 -29.17432 -28.20498 -27.94796 -25.59256 -24.48849 -23.46697 -22.62091 -22.30848 -21.49128 -21.17839 -18.87263 -18.54384 -17.92158 -17.67685 -17.11390 -16.63815 -16.57829 -16.49736 -16.12180 -15.90088 -15.50303 -15.31741 -14.98962 -14.70218 -14.52769 -14.39984 -14.22473 -14.19813 -13.88057 -13.74396 -13.58594 -13.38536 -13.12922 -12.95032 -12.88328 -12.74541 -12.53712 -12.44566 -12.34468 -12.13470 -11.92044 -11.77436 -11.66461 -11.44153 -11.19016 -10.96382 -10.65924 -10.55427 -10.11746 -9.78042 -9.74912 -9.56876 -8.17922 -6.29374 0.45828 0.53736 1.40430 1.41509 1.50417 1.54067 2.01911 2.41684 2.68783 2.93575 3.15495 3.60877 3.75425 3.78462 3.85070 3.94422 3.97882 4.05943 4.12111 4.16820 4.24366 4.27654 4.30279 4.34149 4.35555 4.56056 4.65445 4.66754 4.73547 4.77007 4.86075 4.88530 4.94287 4.98130 5.09263 5.17638 5.19161 5.26554 5.32452 5.38765 5.52147 5.60094 5.63483 5.68191 5.81511 5.86052 5.99822 6.14829 6.17792 6.24324 6.50366 6.53845 6.88320 7.21334 7.40170 8.93381 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007742 B = 0.003552 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3615.666665 B = 7880.289775 C =10083.589519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 C -0.173 4.173 4 O -0.391 6.391 5 C 0.048 3.952 6 C 0.086 3.914 7 H 0.112 0.888 8 N -0.831 5.831 9 C 0.523 3.477 10 O -0.566 6.566 11 N -0.703 5.703 12 C 0.194 3.806 13 H 0.060 0.940 14 C -0.094 4.094 15 C 0.031 3.969 16 C -0.539 4.539 17 H 0.062 0.938 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.260 1.260 22 H -0.283 1.283 23 H -0.278 1.278 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.127 4.127 28 C -0.124 4.124 29 C -0.130 4.130 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.348 0.652 40 H 0.362 0.638 41 H 0.410 0.590 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.004 0.996 45 H -0.023 1.023 46 H 0.262 0.738 47 H 0.128 0.872 48 H 0.147 0.853 49 H 0.148 0.852 50 H 0.140 0.860 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.308 17.552 -17.279 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 C -0.230 4.230 4 O -0.311 6.311 5 C -0.031 4.031 6 C -0.029 4.029 7 H 0.130 0.870 8 N -0.364 5.364 9 C 0.309 3.691 10 O -0.445 6.445 11 N -0.354 5.354 12 C 0.089 3.911 13 H 0.078 0.922 14 C -0.132 4.132 15 C -0.006 4.006 16 C -0.577 4.577 17 H 0.080 0.920 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.787 3.213 21 H -0.184 1.184 22 H -0.209 1.209 23 H -0.203 1.203 24 C -0.098 4.098 25 C -0.134 4.134 26 C -0.141 4.141 27 C -0.144 4.144 28 C -0.142 4.142 29 C -0.148 4.148 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.162 0.838 40 H 0.178 0.822 41 H 0.247 0.753 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.022 0.978 45 H -0.004 1.004 46 H 0.071 0.929 47 H 0.146 0.854 48 H 0.165 0.835 49 H 0.166 0.834 50 H 0.158 0.842 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.519 17.243 -16.201 23.794 hybrid contribution -0.518 -0.553 -0.153 0.773 sum -3.037 16.690 -16.355 23.564 Atomic orbital electron populations 1.21874 0.92520 1.02820 1.03255 1.22329 0.95801 0.92708 0.87541 1.22286 1.01085 0.96331 1.03315 1.87867 1.35662 1.70286 1.37235 1.23034 0.86526 0.96558 0.96978 1.21237 0.94388 0.95458 0.91854 0.87019 1.58439 1.13699 1.20520 1.43728 1.20615 0.90632 0.81734 0.76097 1.90649 1.32185 1.70464 1.51157 1.45924 1.10572 1.17742 1.61165 1.19741 0.86005 0.91334 0.94057 0.92163 1.21704 1.01193 0.91346 0.98953 1.18946 0.94611 0.95037 0.91973 1.21693 1.42442 0.95959 0.97595 0.91959 1.25953 0.95611 1.03090 0.95101 1.70123 1.46426 1.38090 1.02545 0.85443 0.77815 0.79534 0.78506 1.18395 1.20905 1.20348 1.20214 0.94334 0.99877 0.95369 1.21084 1.00138 0.99665 0.92533 1.21439 0.95592 0.99261 0.97775 1.21484 0.94006 0.99835 0.99122 1.21373 1.00989 0.99237 0.92605 1.21175 0.94370 1.00377 0.98902 0.92187 0.89331 0.92325 0.91389 0.89893 0.92105 0.93232 0.92881 0.91255 0.83815 0.82231 0.75333 0.91791 0.90908 0.97759 1.00411 0.92936 0.85429 0.83542 0.83437 0.84215 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.56 71.98 0.69 -1.16 16 2 C 0.07 1.09 3.34 30.60 0.10 1.19 16 3 C -0.17 -2.23 9.53 71.98 0.69 -1.55 16 4 O -0.39 -7.72 9.65 -148.98 -1.44 -9.16 16 5 C 0.05 0.99 5.32 71.98 0.38 1.38 16 6 C 0.09 2.27 3.45 44.17 0.15 2.42 16 7 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 8 N -0.83 -22.06 8.98 -171.79 -1.54 -23.61 16 9 C 0.52 17.40 7.04 87.66 0.62 18.01 16 10 O -0.57 -23.08 15.91 -3.04 -0.05 -23.13 16 11 N -0.70 -22.33 3.78 -446.11 -1.69 -24.02 16 12 C 0.19 6.88 2.17 44.24 0.10 6.98 16 13 H 0.06 2.54 7.44 -2.39 -0.02 2.52 16 14 C -0.09 -3.71 4.67 30.59 0.14 -3.56 16 15 C 0.03 1.62 4.86 29.85 0.15 1.76 16 16 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 17 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 18 C 0.00 0.02 5.46 84.66 0.46 0.48 16 19 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 20 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 C -0.10 -2.96 4.91 -19.87 -0.10 -3.05 16 25 C -0.12 -2.92 9.32 22.27 0.21 -2.71 16 26 C -0.12 -2.54 10.05 22.27 0.22 -2.31 16 27 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 28 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 29 C -0.13 -3.82 9.67 22.27 0.22 -3.60 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.90 7.79 -2.39 -0.02 0.88 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.70 7.87 -2.39 -0.02 0.69 16 37 H 0.05 1.11 7.87 -2.39 -0.02 1.09 16 38 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 39 H 0.35 9.14 8.58 -89.69 -0.77 8.37 16 40 H 0.36 8.12 8.75 -89.69 -0.78 7.34 16 41 H 0.41 11.35 8.60 -92.71 -0.80 10.56 16 42 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.00 0.22 7.75 -2.39 -0.02 0.20 16 45 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 46 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 47 H 0.13 2.82 7.73 -2.91 -0.02 2.80 16 48 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 49 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 50 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 51 H 0.11 3.38 8.04 -2.91 -0.02 3.36 16 Total: -1.00 -72.34 423.02 0.87 -71.46 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -1.43 Total: 39.53 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 4.70 Total: -20.51 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -2.94 Total: -104.25 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.49 Total: -32.28 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -72.34 0.87 -71.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575787783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.728 kcal (2) G-P(sol) polarization free energy of solvation -72.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds