Wall clock time and date at job start Tue Mar 31 2020 20:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47424 * 6.96110 * 3 2 1 5 5 C 1.42897 * 114.00455 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47142 * 330.00503 * 5 4 3 7 7 C 1.53003 * 109.47048 * 89.99881 * 5 4 3 8 8 C 1.50700 * 109.47452 * 210.00199 * 5 4 3 9 9 O 1.21276 * 119.99656 * 347.80264 * 8 5 4 10 10 N 1.34777 * 120.00126 * 167.80121 * 8 5 4 11 11 C 1.47573 * 125.62832 * 353.68461 * 10 8 5 12 12 C 1.54141 * 104.77988 * 156.65265 * 11 10 8 13 13 C 1.54371 * 102.47519 * 36.08177 * 12 11 10 14 14 C 1.47080 * 125.63039 * 173.65649 * 10 8 5 15 15 H 1.08997 * 109.88019 * 300.59621 * 14 10 8 16 16 C 1.53000 * 109.87802 * 61.59264 * 14 10 8 17 17 C 1.52110 * 110.64926 * 153.96040 * 12 11 10 18 18 C 1.53345 * 109.44552 * 64.40996 * 17 12 11 19 19 N 1.46931 * 108.69139 * 53.29325 * 18 17 12 20 20 C 1.36935 * 120.55081 * 125.65169 * 19 18 17 21 21 H 1.08000 * 120.00104 * 334.53268 * 20 19 18 22 22 C 1.38813 * 119.99631 * 154.53763 * 20 19 18 23 23 N 1.31614 * 119.99956 * 332.51159 * 22 20 19 24 24 Si 1.86804 * 119.99899 * 152.51387 * 22 20 19 25 25 H 1.48499 * 109.46894 * 179.97438 * 24 22 20 26 26 H 1.48496 * 109.47166 * 299.99995 * 24 22 20 27 27 H 1.48496 * 109.47071 * 59.99937 * 24 22 20 28 28 C 1.46936 * 118.89093 * 305.92534 * 19 18 17 29 29 C 1.52101 * 110.66030 * 278.20183 * 12 11 10 30 30 H 4.38453 * 5.44375 * 179.97438 * 4 1 2 31 31 H 1.08997 * 109.47340 * 246.95806 * 3 2 1 32 32 H 1.09006 * 109.47319 * 126.96522 * 3 2 1 33 33 H 1.08995 * 109.46668 * 64.97597 * 7 5 4 34 34 H 1.09002 * 109.46699 * 184.97676 * 7 5 4 35 35 H 1.08999 * 109.47393 * 304.97415 * 7 5 4 36 36 H 1.08995 * 110.37678 * 37.82588 * 11 10 8 37 37 H 1.09001 * 110.37535 * 275.47970 * 11 10 8 38 38 H 1.08994 * 110.73894 * 83.70314 * 13 12 11 39 39 H 1.09007 * 110.73465 * 207.01547 * 13 12 11 40 40 H 1.09000 * 109.46998 * 58.54474 * 16 14 10 41 41 H 1.09001 * 109.47464 * 178.54666 * 16 14 10 42 42 H 1.09003 * 109.47411 * 298.54770 * 16 14 10 43 43 H 1.08997 * 109.47610 * 304.41126 * 17 12 11 44 44 H 1.09008 * 109.47753 * 184.40065 * 17 12 11 45 45 H 1.09005 * 109.59567 * 293.53157 * 18 17 12 46 46 H 1.09000 * 109.59634 * 173.05928 * 18 17 12 47 47 H 0.97000 * 120.00344 * 353.92583 * 23 22 20 48 48 H 1.08997 * 109.59497 * 173.83253 * 28 19 18 49 49 H 1.08992 * 109.59919 * 294.30888 * 28 19 18 50 50 H 1.08996 * 109.47671 * 55.58935 * 29 12 11 51 51 H 1.09001 * 109.47381 * 175.60565 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.3364 -0.1633 5 6 4.5475 -1.4478 -0.1775 6 1 4.9794 -0.5331 -0.5838 7 6 5.0566 -1.6621 1.2493 8 6 4.9514 -2.6185 -1.0362 9 8 4.1170 -3.4198 -1.4003 10 7 6.2398 -2.7750 -1.3995 11 6 7.3288 -1.8133 -1.1409 12 6 8.6175 -2.6580 -1.1827 13 6 8.3073 -3.6849 -2.2927 14 6 6.7926 -3.9328 -2.1188 15 1 6.6276 -4.8418 -1.5404 16 6 6.1255 -4.0605 -3.4897 17 6 9.8106 -1.7975 -1.5697 18 6 10.0533 -0.7430 -0.4831 19 7 10.1637 -1.4216 0.8154 20 6 11.2592 -1.2244 1.6129 21 1 12.2014 -0.9317 1.1736 22 6 11.1588 -1.4009 2.9861 23 7 10.0033 -1.2205 3.5900 24 14 12.6635 -1.8943 3.9770 25 1 12.2942 -2.0164 5.4102 26 1 13.1749 -3.1984 3.4842 27 1 13.7177 -0.8596 3.8244 28 6 9.0818 -2.3202 1.2411 29 6 8.8419 -3.3610 0.1474 30 1 -1.0498 -0.0004 0.0001 31 1 3.0091 0.4030 0.9456 32 1 3.0091 0.6188 -0.8211 33 1 4.6958 -2.6201 1.6236 34 1 6.1466 -1.6586 1.2504 35 1 4.6901 -0.8602 1.8902 36 1 7.2063 -1.3563 -0.1590 37 1 7.3514 -1.0479 -1.9165 38 1 8.5191 -3.2659 -3.2763 39 1 8.8694 -4.6054 -2.1350 40 1 6.2877 -3.1454 -4.0594 41 1 6.5581 -4.9045 -4.0271 42 1 5.0555 -4.2226 -3.3595 43 1 9.6083 -1.3014 -2.5189 44 1 10.6953 -2.4265 -1.6697 45 1 9.2181 -0.0429 -0.4600 46 1 10.9779 -0.2059 -0.6949 47 1 9.2438 -0.8796 3.0921 48 1 9.3663 -2.8225 2.1656 49 1 8.1701 -1.7447 1.4005 50 1 7.9634 -3.9560 0.3966 51 1 9.7126 -4.0123 0.0718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656394695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:14 Heat of formation + Delta-G solvation = -1.637467 kcal Electronic energy + Delta-G solvation = -30850.154007 eV Core-core repulsion = 26944.888272 eV Total energy + Delta-G solvation = -3905.265734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.81945 -39.09258 -37.74241 -36.17172 -33.72857 -33.39364 -32.49802 -30.89301 -30.52188 -30.10919 -27.31422 -27.18260 -25.98337 -24.58869 -23.92384 -22.61711 -21.58856 -20.79813 -19.40219 -18.72703 -18.29719 -17.40270 -17.05229 -16.71372 -16.24456 -15.72972 -15.08693 -14.74819 -14.51505 -14.31337 -14.14087 -13.93197 -13.67958 -13.53456 -13.29123 -13.07286 -12.93122 -12.76436 -12.55798 -12.36664 -12.24796 -11.91358 -11.84771 -11.73622 -11.50791 -11.17821 -11.12979 -10.89699 -10.81208 -10.74145 -10.73154 -10.46679 -10.33387 -10.06571 -9.92497 -9.89902 -9.78716 -9.42883 -9.30693 -8.58847 -8.39714 -6.95805 -6.13481 -3.25554 2.15770 2.58782 2.62228 2.90603 3.46495 3.50362 3.67957 3.77626 4.24470 4.44487 4.54595 4.56870 4.72885 4.80443 4.85991 4.93827 4.99642 5.13074 5.15497 5.17168 5.30295 5.34021 5.43833 5.47163 5.53670 5.63433 5.64312 5.66952 5.69514 5.76986 5.81603 5.90328 5.92966 6.05507 6.08811 6.16762 6.21931 6.26346 6.39984 6.42364 6.48544 6.50958 6.65766 6.72172 6.84321 6.99645 7.12365 7.34556 7.53919 7.94452 8.20551 8.51371 9.05177 9.78965 10.22250 11.15292 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011931 B = 0.003619 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.204038 B = 7735.552702 C = 9352.777599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.188 4.188 3 C 0.168 3.832 4 O -0.353 6.353 5 C 0.077 3.923 6 H 0.085 0.915 7 C -0.175 4.175 8 C 0.534 3.466 9 O -0.524 6.524 10 N -0.609 5.609 11 C 0.099 3.901 12 C -0.054 4.054 13 C -0.121 4.121 14 C 0.139 3.861 15 H 0.074 0.926 16 C -0.162 4.162 17 C -0.118 4.118 18 C 0.147 3.853 19 N -0.597 5.597 20 C -0.351 4.351 21 H 0.056 0.944 22 C -0.022 4.022 23 N -0.912 5.912 24 Si 1.058 2.942 25 H -0.286 1.286 26 H -0.294 1.294 27 H -0.293 1.293 28 C 0.151 3.849 29 C -0.122 4.122 30 H 0.222 0.778 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.015 0.985 46 H 0.056 0.944 47 H 0.268 0.732 48 H 0.082 0.918 49 H 0.015 0.985 50 H 0.052 0.948 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 0.570 -11.059 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.188 4.188 3 C 0.092 3.908 4 O -0.271 6.271 5 C 0.016 3.984 6 H 0.103 0.897 7 C -0.232 4.232 8 C 0.321 3.679 9 O -0.399 6.399 10 N -0.344 5.344 11 C -0.023 4.023 12 C -0.055 4.055 13 C -0.159 4.159 14 C 0.036 3.964 15 H 0.092 0.908 16 C -0.220 4.220 17 C -0.158 4.158 18 C 0.020 3.980 19 N -0.321 5.321 20 C -0.479 4.479 21 H 0.074 0.926 22 C -0.224 4.224 23 N -0.551 5.551 24 Si 0.888 3.112 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.220 1.220 28 C 0.025 3.975 29 C -0.161 4.161 30 H 0.239 0.761 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.033 0.967 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.033 0.967 50 H 0.071 0.929 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.814 -0.415 -9.703 13.807 hybrid contribution -0.449 0.732 -1.568 1.788 sum -10.263 0.317 -11.271 15.247 Atomic orbital electron populations 1.24938 0.95847 0.97616 1.00921 1.22450 0.93785 1.02035 1.00549 1.19195 0.84995 0.84986 1.01583 1.88088 1.19199 1.25717 1.94128 1.21888 0.82385 0.97523 0.96650 0.89723 1.22322 1.02870 1.03965 0.94047 1.19880 0.80916 0.86937 0.80134 1.90683 1.49515 1.44952 1.54747 1.48534 1.07168 1.21750 1.56985 1.22630 0.85931 0.91832 1.01895 1.20960 0.93824 0.94885 0.95854 1.22815 0.93465 1.00318 0.99329 1.21568 0.93059 0.88887 0.92855 0.90817 1.22154 1.02342 1.01579 0.95892 1.21869 0.96784 0.98578 0.98568 1.20928 0.98672 0.92273 0.86077 1.44101 1.21775 1.48546 1.17638 1.19953 0.88531 1.49319 0.90147 0.92587 1.25737 1.03053 0.99710 0.93940 1.70803 1.03313 1.43048 1.37977 0.83616 0.74844 0.76424 0.76285 1.21125 1.22114 1.22033 1.20917 0.90122 0.90265 0.96224 1.21831 1.00516 0.98999 0.94756 0.76138 0.90325 0.90687 0.91017 0.89736 0.90862 0.89476 0.91530 0.90634 0.90058 0.92727 0.91928 0.91161 0.92712 0.91585 0.96683 0.92555 0.92173 0.90017 0.96719 0.92932 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 19.25 29.55 0.57 -1.22 16 2 C -0.19 -2.26 13.73 -37.13 -0.51 -2.77 16 3 C 0.17 1.87 6.22 34.37 0.21 2.09 16 4 O -0.35 -5.15 9.51 -54.84 -0.52 -5.67 16 5 C 0.08 1.02 2.41 -27.88 -0.07 0.95 16 6 H 0.08 0.93 7.50 -51.93 -0.39 0.54 16 7 C -0.17 -2.27 9.37 37.16 0.35 -1.93 16 8 C 0.53 8.35 6.98 -10.99 -0.08 8.27 16 9 O -0.52 -9.95 15.38 -14.05 -0.22 -10.17 16 10 N -0.61 -8.50 3.06 -163.25 -0.50 -9.00 16 11 C 0.10 1.33 4.48 -2.86 -0.01 1.32 16 12 C -0.05 -0.77 0.54 -154.10 -0.08 -0.85 16 13 C -0.12 -1.45 5.42 -25.25 -0.14 -1.58 16 14 C 0.14 1.81 3.14 -66.85 -0.21 1.60 16 15 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.16 -1.94 9.09 37.16 0.34 -1.60 16 17 C -0.12 -1.75 4.83 -27.01 -0.13 -1.88 16 18 C 0.15 2.71 6.25 -3.63 -0.02 2.69 16 19 N -0.60 -13.51 2.86 -172.41 -0.49 -14.00 16 20 C -0.35 -9.18 9.48 -15.06 -0.14 -9.32 16 21 H 0.06 1.49 7.95 -52.49 -0.42 1.07 16 22 C -0.02 -0.60 4.63 -17.43 -0.08 -0.68 16 23 N -0.91 -25.82 12.34 55.49 0.68 -25.13 16 24 Si 1.06 24.28 30.00 -169.99 -5.10 19.18 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 28 C 0.15 3.16 4.40 -3.87 -0.02 3.14 16 29 C -0.12 -2.06 4.81 -27.25 -0.13 -2.19 16 30 H 0.22 1.34 7.80 -54.10 -0.42 0.91 16 31 H 0.08 0.73 7.78 -51.93 -0.40 0.32 16 32 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.17 4.86 -51.93 -0.25 0.92 16 35 H 0.07 0.83 7.78 -51.93 -0.40 0.43 16 36 H 0.09 1.25 3.79 -51.93 -0.20 1.06 16 37 H 0.07 0.81 7.97 -51.93 -0.41 0.40 16 38 H 0.08 0.81 7.70 -51.93 -0.40 0.41 16 39 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.00 6.69 -51.93 -0.35 0.65 16 43 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 44 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 45 H 0.02 0.27 7.64 -51.93 -0.40 -0.12 16 46 H 0.06 1.06 7.92 -51.93 -0.41 0.65 16 47 H 0.27 7.55 6.90 -40.82 -0.28 7.27 16 48 H 0.08 2.01 6.18 -51.93 -0.32 1.69 16 49 H 0.02 0.31 5.24 -51.93 -0.27 0.04 16 50 H 0.05 0.86 7.84 -51.93 -0.41 0.45 16 51 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -32.02 394.09 -8.68 -40.71 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.33 Total: 2.12 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -0.15 Total: -3.97 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.31 Total: -48.14 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.74 Total: -15.84 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.10 Total: 19.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.02 -8.68 -40.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656394695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.070 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds