Wall clock time and date at job start Tue Mar 31 2020 19:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38129 * 119.94586 * 179.74253 * 6 5 4 8 8 C 1.38288 * 120.05279 * 0.50650 * 7 6 5 9 9 C 1.38250 * 120.10917 * 359.76642 * 8 7 6 10 10 C 1.50704 * 119.96871 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47316 * 270.02249 * 10 9 8 12 12 O 1.21283 * 119.99814 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99654 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99984 * 180.02562 * 13 11 10 16 16 H 1.08995 * 109.46971 * 359.97438 * 15 13 11 17 17 C 1.53003 * 109.47108 * 119.99919 * 15 13 11 18 18 C 1.53001 * 109.46843 * 239.99787 * 15 13 11 19 19 N 1.46503 * 109.47179 * 54.99859 * 18 15 13 20 20 C 1.36937 * 119.99963 * 179.97438 * 19 18 15 21 21 H 1.07997 * 120.00067 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00001 * 180.02562 * 20 19 18 23 23 N 1.31613 * 119.99946 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99679 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46883 * 90.00178 * 24 22 20 26 26 H 1.48499 * 109.46650 * 209.99687 * 24 22 20 27 27 H 1.48499 * 109.47164 * 330.00046 * 24 22 20 28 28 C 1.38162 * 120.05723 * 359.97438 * 9 8 7 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 32 32 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 33 33 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 36 36 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 37 37 H 1.07992 * 119.97408 * 180.25091 * 7 6 5 38 38 H 1.07997 * 119.94352 * 179.74725 * 8 7 6 39 39 H 1.09003 * 109.46632 * 30.02434 * 10 9 8 40 40 H 1.08996 * 109.46429 * 150.02007 * 10 9 8 41 41 H 1.09001 * 109.47208 * 90.00601 * 14 13 11 42 42 H 1.09004 * 109.46875 * 210.00361 * 14 13 11 43 43 H 1.08999 * 109.47342 * 329.99830 * 14 13 11 44 44 H 1.09005 * 109.46769 * 299.99747 * 17 15 13 45 45 H 1.09002 * 109.47075 * 60.00119 * 17 15 13 46 46 H 1.09002 * 109.46745 * 179.97438 * 17 15 13 47 47 H 1.08998 * 109.47187 * 175.00066 * 18 15 13 48 48 H 1.08995 * 109.47163 * 294.99848 * 18 15 13 49 49 H 0.97001 * 119.99696 * 359.97438 * 19 18 15 50 50 H 0.96997 * 119.99900 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.02891 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0471 -0.0022 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0030 11 6 8.1019 4.0675 -1.4240 12 8 7.3145 4.0247 -2.3455 13 7 9.4250 4.1383 -1.6709 14 6 10.3760 4.1894 -0.5578 15 6 9.9119 4.1652 -3.0523 16 1 9.0650 4.1201 -3.7370 17 6 10.6940 5.4582 -3.2923 18 6 10.8272 2.9632 -3.2939 19 7 10.1150 1.7301 -2.9495 20 6 10.7383 0.5185 -3.0862 21 1 11.7550 0.4720 -3.4476 22 6 10.0634 -0.6499 -2.7603 23 7 10.6626 -1.8144 -2.8913 24 14 8.3046 -0.5694 -2.1359 25 1 7.3674 -0.6427 -3.2855 26 1 8.0525 -1.7094 -1.2183 27 1 8.0959 0.7078 -1.4077 28 6 5.4712 2.7271 -0.0016 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.2529 3.7627 -0.0114 37 1 3.3742 5.9537 -0.0026 38 1 5.8324 6.0804 -0.0027 39 1 7.9161 4.9486 0.5108 40 1 8.0117 3.1712 0.5106 41 1 10.6669 3.1758 -0.2816 42 1 11.2597 4.7512 -0.8604 43 1 9.9092 4.6791 0.2968 44 1 10.0419 6.3145 -3.1201 45 1 11.5410 5.5029 -2.6075 46 1 11.0567 5.4780 -4.3200 47 1 11.1183 2.9334 -4.3439 48 1 11.7179 3.0541 -2.6724 49 1 9.2020 1.7720 -2.6245 50 1 10.1909 -2.6309 -2.6639 51 1 6.0606 1.8222 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667029619.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:31 Heat of formation + Delta-G solvation = -40.475750 kcal Electronic energy + Delta-G solvation = -29463.110547 eV Core-core repulsion = 25556.160658 eV Total energy + Delta-G solvation = -3906.949889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.40794 -39.70302 -37.79457 -36.38776 -34.19895 -34.12123 -32.83661 -31.71882 -30.50637 -30.14603 -27.64052 -26.75169 -26.63166 -25.84701 -22.92850 -22.40427 -22.06055 -21.41246 -20.52055 -18.90562 -17.75757 -17.51784 -17.07896 -16.44314 -16.29958 -16.06388 -15.75958 -15.26458 -14.59286 -14.37108 -14.32902 -14.12715 -13.95381 -13.53641 -13.22333 -13.06476 -12.84408 -12.75629 -12.56065 -12.48261 -12.43240 -12.42122 -12.16447 -11.98346 -11.85487 -11.74122 -11.51433 -11.47922 -11.41117 -10.90398 -10.83046 -10.78438 -10.76152 -10.51396 -10.04658 -9.59449 -9.54935 -8.86347 -8.80028 -8.35396 -8.18330 -7.17829 -5.73097 -3.07538 1.27809 1.46967 2.88022 3.04753 3.22933 3.43764 3.50272 3.55370 3.78988 4.54329 4.60081 4.64368 4.64990 4.78398 4.80368 4.90925 4.94046 5.07808 5.11550 5.14916 5.15630 5.25817 5.29432 5.32661 5.33535 5.41267 5.49308 5.57710 5.58317 5.64396 5.65557 5.68339 5.77418 5.86104 5.89175 5.91335 6.01459 6.03306 6.07275 6.24948 6.28714 6.38206 6.41114 6.57487 6.65555 6.74245 6.90222 7.40557 7.62502 8.03207 8.43075 8.46891 9.26426 9.99507 10.20047 11.45140 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009562 B = 0.003925 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.554750 B = 7132.687241 C = 9521.848793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.060 3.940 4 O -0.315 6.315 5 C 0.132 3.868 6 C -0.211 4.211 7 C -0.081 4.081 8 C -0.143 4.143 9 C -0.022 4.022 10 C -0.104 4.104 11 C 0.516 3.484 12 O -0.534 6.534 13 N -0.601 5.601 14 C 0.076 3.924 15 C 0.121 3.879 16 H 0.100 0.900 17 C -0.154 4.154 18 C 0.149 3.851 19 N -0.752 5.752 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.934 5.934 24 Si 0.882 3.118 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.136 4.136 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.036 0.964 48 H 0.028 0.972 49 H 0.363 0.637 50 H 0.259 0.741 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 16.020 10.064 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.016 4.016 4 O -0.229 6.229 5 C 0.087 3.913 6 C -0.230 4.230 7 C -0.100 4.100 8 C -0.161 4.161 9 C -0.022 4.022 10 C -0.144 4.144 11 C 0.304 3.696 12 O -0.410 6.410 13 N -0.335 5.335 14 C -0.067 4.067 15 C 0.018 3.982 16 H 0.118 0.882 17 C -0.213 4.213 18 C 0.021 3.979 19 N -0.398 5.398 20 C -0.372 4.372 21 H 0.107 0.893 22 C -0.189 4.189 23 N -0.583 5.583 24 Si 0.713 3.287 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.154 4.154 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.054 0.946 48 H 0.046 0.954 49 H 0.196 0.804 50 H 0.069 0.931 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.995 15.621 9.515 23.031 hybrid contribution -1.290 -0.043 0.448 1.367 sum -15.285 15.579 9.963 23.992 Atomic orbital electron populations 1.21679 0.94278 1.02528 1.02069 1.21504 0.95952 0.94937 1.04029 1.22853 0.78687 0.98803 1.01231 1.86089 1.21109 1.27086 1.88636 1.18880 0.92057 0.84072 0.96315 1.21164 0.99701 0.92448 1.09682 1.20815 0.94408 0.96796 0.97937 1.20827 0.93752 0.97583 1.03941 1.19056 0.93800 0.92486 0.96898 1.20752 0.92712 1.05227 0.95695 1.20359 0.82068 0.76226 0.90954 1.90712 1.54764 1.49372 1.46155 1.47750 1.05589 1.72897 1.07220 1.21794 0.93413 1.02801 0.88714 1.21449 0.98575 0.95340 0.82811 0.88210 1.22046 1.00166 0.96737 1.02328 1.20976 0.93664 0.85054 0.98233 1.42650 1.14438 1.02097 1.80584 1.19043 0.98667 0.82347 1.37162 0.89253 1.24627 0.97625 0.95156 1.01521 1.69700 1.36865 0.96861 1.54834 0.86593 0.86403 0.76661 0.79040 1.21081 1.21742 1.20454 1.20330 0.91563 0.98373 1.05180 0.91699 0.92461 0.92385 0.90607 0.90741 0.92156 0.92089 0.85781 0.85907 0.86130 0.87790 0.87631 0.91553 0.90894 0.91596 0.92612 0.92214 0.91253 0.94637 0.95371 0.80354 0.93122 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.15 0.37 -0.65 16 2 C -0.13 -1.18 6.30 -26.74 -0.17 -1.35 16 3 C 0.06 0.63 4.74 37.16 0.18 0.81 16 4 O -0.32 -4.74 10.14 -19.43 -0.20 -4.94 16 5 C 0.13 2.02 6.69 -39.22 -0.26 1.75 16 6 C -0.21 -2.68 9.04 -39.43 -0.36 -3.03 16 7 C -0.08 -0.96 10.04 -39.60 -0.40 -1.36 16 8 C -0.14 -1.83 9.70 -39.56 -0.38 -2.21 16 9 C -0.02 -0.32 4.37 -104.64 -0.46 -0.78 16 10 C -0.10 -1.40 4.38 -29.03 -0.13 -1.53 16 11 C 0.52 8.82 7.37 -10.99 -0.08 8.74 16 12 O -0.53 -11.21 15.36 5.55 0.09 -11.12 16 13 N -0.60 -9.37 2.24 -173.93 -0.39 -9.76 16 14 C 0.08 0.91 9.40 59.85 0.56 1.48 16 15 C 0.12 1.99 2.80 -67.93 -0.19 1.80 16 16 H 0.10 1.87 6.90 -51.93 -0.36 1.52 16 17 C -0.15 -1.86 9.17 37.16 0.34 -1.52 16 18 C 0.15 2.92 5.56 -4.04 -0.02 2.90 16 19 N -0.75 -18.72 5.24 -59.91 -0.31 -19.03 16 20 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 22 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -30.12 13.97 55.49 0.78 -29.35 16 24 Si 0.88 23.89 27.74 -169.99 -4.71 19.18 16 25 H -0.28 -7.89 7.11 56.52 0.40 -7.49 16 26 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 27 H -0.28 -7.19 6.52 56.52 0.37 -6.82 16 28 C -0.14 -2.25 9.64 -39.43 -0.38 -2.63 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.54 7.68 -51.93 -0.40 0.14 16 35 H 0.06 0.60 7.65 -51.93 -0.40 0.21 16 36 H 0.12 1.25 6.30 -52.48 -0.33 0.92 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.10 1.00 7.35 -51.93 -0.38 0.62 16 40 H 0.11 1.38 8.05 -51.93 -0.42 0.96 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.75 6.42 -51.93 -0.33 0.41 16 43 H 0.07 0.59 6.44 -51.93 -0.33 0.25 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.03 0.54 7.84 -51.93 -0.41 0.13 16 49 H 0.36 9.31 4.92 -40.82 -0.20 9.11 16 50 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 51 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 410.53 15.07 6.19 6.19 Total: -1.00 -36.79 410.53 -8.77 -45.56 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -8.57 Total: 7.98 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.63 Total: -4.71 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.07 Total: -58.14 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.11 Total: -16.06 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -4.71 Total: 19.18 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.79 -8.77 -45.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667029619.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.085 kcal (2) G-P(sol) polarization free energy of solvation -36.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds