Wall clock time and date at job start Tue Mar 31 2020 19:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38129 * 119.94586 * 179.74253 * 6 5 4 8 8 C 1.38288 * 120.05279 * 0.50650 * 7 6 5 9 9 C 1.38250 * 120.10917 * 359.76642 * 8 7 6 10 10 C 1.50704 * 119.96871 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47316 * 270.02249 * 10 9 8 12 12 O 1.21283 * 119.99814 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99654 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99984 * 180.02562 * 13 11 10 16 16 H 1.08995 * 109.46971 * 359.97438 * 15 13 11 17 17 C 1.53003 * 109.47108 * 119.99919 * 15 13 11 18 18 C 1.53001 * 109.46843 * 239.99787 * 15 13 11 19 19 N 1.46503 * 109.47179 * 54.99859 * 18 15 13 20 20 C 1.36937 * 119.99963 * 179.97438 * 19 18 15 21 21 H 1.07997 * 120.00067 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00001 * 180.02562 * 20 19 18 23 23 N 1.31613 * 119.99946 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99679 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46883 * 90.00178 * 24 22 20 26 26 H 1.48499 * 109.46650 * 209.99687 * 24 22 20 27 27 H 1.48499 * 109.47164 * 330.00046 * 24 22 20 28 28 C 1.38162 * 120.05723 * 359.97438 * 9 8 7 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 32 32 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 33 33 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 36 36 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 37 37 H 1.07992 * 119.97408 * 180.25091 * 7 6 5 38 38 H 1.07997 * 119.94352 * 179.74725 * 8 7 6 39 39 H 1.09003 * 109.46632 * 30.02434 * 10 9 8 40 40 H 1.08996 * 109.46429 * 150.02007 * 10 9 8 41 41 H 1.09001 * 109.47208 * 90.00601 * 14 13 11 42 42 H 1.09004 * 109.46875 * 210.00361 * 14 13 11 43 43 H 1.08999 * 109.47342 * 329.99830 * 14 13 11 44 44 H 1.09005 * 109.46769 * 299.99747 * 17 15 13 45 45 H 1.09002 * 109.47075 * 60.00119 * 17 15 13 46 46 H 1.09002 * 109.46745 * 179.97438 * 17 15 13 47 47 H 1.08998 * 109.47187 * 175.00066 * 18 15 13 48 48 H 1.08995 * 109.47163 * 294.99848 * 18 15 13 49 49 H 0.97001 * 119.99696 * 359.97438 * 19 18 15 50 50 H 0.96997 * 119.99900 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.02891 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0471 -0.0022 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0030 11 6 8.1019 4.0675 -1.4240 12 8 7.3145 4.0247 -2.3455 13 7 9.4250 4.1383 -1.6709 14 6 10.3760 4.1894 -0.5578 15 6 9.9119 4.1652 -3.0523 16 1 9.0650 4.1201 -3.7370 17 6 10.6940 5.4582 -3.2923 18 6 10.8272 2.9632 -3.2939 19 7 10.1150 1.7301 -2.9495 20 6 10.7383 0.5185 -3.0862 21 1 11.7550 0.4720 -3.4476 22 6 10.0634 -0.6499 -2.7603 23 7 10.6626 -1.8144 -2.8913 24 14 8.3046 -0.5694 -2.1359 25 1 7.3674 -0.6427 -3.2855 26 1 8.0525 -1.7094 -1.2183 27 1 8.0959 0.7078 -1.4077 28 6 5.4712 2.7271 -0.0016 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.2529 3.7627 -0.0114 37 1 3.3742 5.9537 -0.0026 38 1 5.8324 6.0804 -0.0027 39 1 7.9161 4.9486 0.5108 40 1 8.0117 3.1712 0.5106 41 1 10.6669 3.1758 -0.2816 42 1 11.2597 4.7512 -0.8604 43 1 9.9092 4.6791 0.2968 44 1 10.0419 6.3145 -3.1201 45 1 11.5410 5.5029 -2.6075 46 1 11.0567 5.4780 -4.3200 47 1 11.1183 2.9334 -4.3439 48 1 11.7179 3.0541 -2.6724 49 1 9.2020 1.7720 -2.6245 50 1 10.1909 -2.6309 -2.6639 51 1 6.0606 1.8222 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667029619.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:30 Heat of formation + Delta-G solvation = -63.659584 kcal Electronic energy + Delta-G solvation = -29464.115874 eV Core-core repulsion = 25556.160658 eV Total energy + Delta-G solvation = -3907.955215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.50768 -40.86583 -38.83479 -37.80737 -35.96574 -34.94494 -34.12535 -33.34284 -32.13962 -31.15084 -28.65908 -27.81615 -27.56853 -27.39886 -24.24432 -23.76979 -23.27325 -22.51254 -21.64240 -20.30174 -19.52390 -18.78497 -18.30415 -17.32095 -17.30560 -17.10940 -17.05162 -16.67371 -16.45056 -15.84720 -15.32631 -15.15500 -15.05203 -14.83809 -14.67029 -14.29957 -14.23916 -14.13312 -13.84559 -13.65275 -13.50864 -13.36435 -13.14047 -13.10506 -13.03214 -12.94406 -12.87811 -12.48462 -12.39104 -12.30784 -12.27580 -12.18054 -11.91220 -11.77238 -11.70122 -11.59987 -11.12787 -10.86768 -9.85575 -9.60991 -9.35060 -9.20217 -8.11817 -5.41446 0.25671 0.44674 1.21667 1.28960 1.31404 1.61567 2.03465 2.17988 2.35224 2.76279 3.20918 3.51733 3.57982 3.75157 3.81334 3.85886 3.92079 4.03374 4.04357 4.13542 4.21661 4.27686 4.30530 4.35331 4.38218 4.38986 4.47590 4.47993 4.54387 4.70543 4.72775 4.79025 4.79804 4.84298 4.91138 4.99739 5.04805 5.05088 5.09757 5.14575 5.25574 5.29871 5.32459 5.41253 5.55836 5.61871 5.70713 5.80413 6.13936 6.41542 6.43649 7.00079 7.18536 7.78605 7.95528 9.09868 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009562 B = 0.003925 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.554750 B = 7132.687241 C = 9521.848793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.053 3.947 4 O -0.345 6.345 5 C 0.112 3.888 6 C -0.211 4.211 7 C -0.076 4.076 8 C -0.146 4.146 9 C -0.034 4.034 10 C -0.099 4.099 11 C 0.507 3.493 12 O -0.582 6.582 13 N -0.602 5.602 14 C 0.069 3.931 15 C 0.126 3.874 16 H 0.071 0.929 17 C -0.142 4.142 18 C 0.143 3.857 19 N -0.757 5.757 20 C -0.223 4.223 21 H 0.069 0.931 22 C -0.049 4.049 23 N -0.976 5.976 24 Si 0.938 3.062 25 H -0.296 1.296 26 H -0.289 1.289 27 H -0.268 1.268 28 C -0.175 4.175 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.151 0.849 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.104 0.896 41 H 0.043 0.957 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.036 0.964 48 H 0.044 0.956 49 H 0.359 0.641 50 H 0.258 0.742 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.927 19.652 11.499 27.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.022 4.022 4 O -0.260 6.260 5 C 0.067 3.933 6 C -0.229 4.229 7 C -0.094 4.094 8 C -0.164 4.164 9 C -0.035 4.035 10 C -0.138 4.138 11 C 0.296 3.704 12 O -0.463 6.463 13 N -0.334 5.334 14 C -0.072 4.072 15 C 0.022 3.978 16 H 0.089 0.911 17 C -0.200 4.200 18 C 0.017 3.983 19 N -0.402 5.402 20 C -0.354 4.354 21 H 0.087 0.913 22 C -0.242 4.242 23 N -0.627 5.627 24 Si 0.768 3.232 25 H -0.224 1.224 26 H -0.215 1.215 27 H -0.193 1.193 28 C -0.194 4.194 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.168 0.832 37 H 0.178 0.822 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.123 0.877 41 H 0.061 0.939 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.192 0.808 50 H 0.067 0.933 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.050 19.306 10.973 26.826 hybrid contribution -0.898 -1.128 -0.052 1.443 sum -15.948 18.178 10.921 26.535 Atomic orbital electron populations 1.21656 0.92012 1.03290 1.02985 1.21551 0.97820 0.94154 1.02993 1.23137 0.76749 0.99811 1.02481 1.86054 1.23417 1.27713 1.88837 1.19108 0.92002 0.85090 0.97063 1.21495 1.00965 0.91835 1.08654 1.21312 0.94493 0.97780 0.95816 1.21201 0.94363 0.97892 1.02923 1.19270 0.94643 0.92481 0.97075 1.20822 0.92084 1.07339 0.93593 1.21025 0.82153 0.75264 0.91932 1.90684 1.56061 1.51678 1.47831 1.47914 1.05879 1.71926 1.07696 1.22052 0.93988 1.02285 0.88896 1.21320 0.97295 0.95977 0.83211 0.91124 1.21958 1.00305 0.94187 1.03518 1.21242 0.94523 0.84275 0.98288 1.42749 1.14429 1.02579 1.80474 1.19094 0.97702 0.83948 1.34641 0.91294 1.25187 1.00780 0.95114 1.03091 1.69815 1.38350 0.97473 1.57078 0.85694 0.82266 0.77076 0.78151 1.22356 1.21512 1.19313 1.20383 0.92471 0.98274 1.08273 0.91061 0.91149 0.91817 0.92268 0.91231 0.90144 0.91346 0.83175 0.82182 0.83395 0.83287 0.87745 0.93870 0.88556 0.87876 0.91446 0.90158 0.90335 0.94652 0.93800 0.80816 0.93290 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.13 -2.38 6.30 30.59 0.19 -2.18 16 3 C 0.05 1.09 4.74 71.98 0.34 1.43 16 4 O -0.35 -10.72 10.14 -92.43 -0.94 -11.66 16 5 C 0.11 3.47 6.69 22.50 0.15 3.62 16 6 C -0.21 -4.96 9.04 22.37 0.20 -4.75 16 7 C -0.08 -1.57 10.04 22.26 0.22 -1.34 16 8 C -0.15 -3.34 9.70 22.28 0.22 -3.12 16 9 C -0.03 -0.98 4.37 -19.88 -0.09 -1.07 16 10 C -0.10 -2.49 4.38 29.10 0.13 -2.37 16 11 C 0.51 16.79 7.37 87.66 0.65 17.43 16 12 O -0.58 -24.61 15.36 -3.04 -0.05 -24.66 16 13 N -0.60 -17.67 2.24 -822.60 -1.85 -19.51 16 14 C 0.07 1.46 9.40 127.77 1.20 2.67 16 15 C 0.13 3.95 2.80 44.99 0.13 4.07 16 16 H 0.07 2.66 6.90 -2.39 -0.02 2.64 16 17 C -0.14 -2.96 9.17 71.98 0.66 -2.30 16 18 C 0.14 5.50 5.56 86.38 0.48 5.98 16 19 N -0.76 -37.87 5.24 -343.45 -1.80 -39.67 16 20 C -0.22 -13.20 10.47 84.03 0.88 -12.32 16 21 H 0.07 4.33 8.06 -2.91 -0.02 4.31 16 22 C -0.05 -3.08 5.50 84.86 0.47 -2.61 16 23 N -0.98 -64.54 13.97 21.65 0.30 -64.24 16 24 Si 0.94 51.32 27.74 68.60 1.90 53.23 16 25 H -0.30 -16.65 7.11 99.48 0.71 -15.95 16 26 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 27 H -0.27 -13.96 6.52 99.48 0.65 -13.31 16 28 C -0.18 -6.00 9.64 22.36 0.22 -5.79 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.31 7.68 -2.39 -0.02 1.29 16 35 H 0.07 1.29 7.65 -2.39 -0.02 1.27 16 36 H 0.15 2.60 6.30 -2.91 -0.02 2.58 16 37 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.15 2.26 7.35 -2.39 -0.02 2.24 16 40 H 0.10 2.64 8.05 -2.39 -0.02 2.62 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.10 1.58 6.42 -2.39 -0.02 1.56 16 43 H 0.10 1.40 6.44 -2.39 -0.02 1.38 16 44 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.08 1.37 6.66 -2.39 -0.02 1.35 16 46 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.04 1.58 7.84 -2.39 -0.02 1.56 16 49 H 0.36 18.58 4.92 -92.71 -0.46 18.13 16 50 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 51 H 0.10 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -84.31 410.53 4.73 -79.58 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.39 Total: 30.61 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 6.76 Total: -3.69 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -3.34 Total: -123.42 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.98 Total: -36.32 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 1.90 Total: 53.23 kcal Total: -84.31 4.73 -79.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667029619.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.925 kcal (2) G-P(sol) polarization free energy of solvation -84.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds