Wall clock time and date at job start Tue Mar 31 2020 19:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38129 * 119.94586 * 179.74253 * 6 5 4 8 8 C 1.38288 * 120.05279 * 0.50650 * 7 6 5 9 9 C 1.38250 * 120.10917 * 359.76642 * 8 7 6 10 10 C 1.50704 * 119.96871 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47316 * 270.02249 * 10 9 8 12 12 O 1.21283 * 119.99814 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99654 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99984 * 180.02562 * 13 11 10 16 16 H 1.08995 * 109.46971 * 359.97438 * 15 13 11 17 17 C 1.53001 * 109.46843 * 239.99787 * 15 13 11 18 18 C 1.53003 * 109.47108 * 119.99919 * 15 13 11 19 19 N 1.46498 * 109.46828 * 304.99821 * 18 15 13 20 20 C 1.36938 * 119.99611 * 180.02562 * 19 18 15 21 21 H 1.08007 * 120.00078 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00125 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99850 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00273 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47220 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47459 * 119.99519 * 24 22 20 27 27 H 1.48507 * 109.46898 * 239.99702 * 24 22 20 28 28 C 1.38162 * 120.05723 * 359.97438 * 9 8 7 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 32 32 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 33 33 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 36 36 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 37 37 H 1.07992 * 119.97408 * 180.25091 * 7 6 5 38 38 H 1.07997 * 119.94352 * 179.74725 * 8 7 6 39 39 H 1.09003 * 109.46632 * 30.02434 * 10 9 8 40 40 H 1.08996 * 109.46429 * 150.02007 * 10 9 8 41 41 H 1.09001 * 109.47208 * 90.00601 * 14 13 11 42 42 H 1.09004 * 109.46875 * 210.00361 * 14 13 11 43 43 H 1.08999 * 109.47342 * 329.99830 * 14 13 11 44 44 H 1.08997 * 109.46781 * 299.99972 * 17 15 13 45 45 H 1.08998 * 109.46915 * 59.99988 * 17 15 13 46 46 H 1.09002 * 109.47211 * 179.97438 * 17 15 13 47 47 H 1.08999 * 109.47146 * 64.99919 * 18 15 13 48 48 H 1.09002 * 109.46686 * 184.99771 * 18 15 13 49 49 H 0.96998 * 120.00411 * 0.02562 * 19 18 15 50 50 H 0.96997 * 120.00109 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.02891 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0471 -0.0022 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0030 11 6 8.1019 4.0675 -1.4240 12 8 7.3145 4.0247 -2.3455 13 7 9.4250 4.1383 -1.6709 14 6 10.3760 4.1894 -0.5578 15 6 9.9119 4.1652 -3.0523 16 1 9.0650 4.1201 -3.7370 17 6 10.8272 2.9632 -3.2939 18 6 10.6940 5.4582 -3.2923 19 7 9.8547 6.6079 -2.9462 20 6 10.3455 7.8792 -3.0813 21 1 11.3515 8.0341 -3.4425 22 6 9.5504 8.9687 -2.7529 23 7 8.3246 8.7798 -2.3122 24 14 10.2201 10.7028 -2.9365 25 1 11.6136 10.6439 -3.4464 26 1 9.3743 11.4614 -3.8927 27 1 10.2050 11.3816 -1.6157 28 6 5.4712 2.7271 -0.0016 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.2529 3.7627 -0.0114 37 1 3.3742 5.9537 -0.0026 38 1 5.8324 6.0804 -0.0027 39 1 7.9161 4.9486 0.5108 40 1 8.0117 3.1712 0.5106 41 1 10.6669 3.1758 -0.2816 42 1 11.2597 4.7512 -0.8604 43 1 9.9092 4.6791 0.2968 44 1 11.6740 3.0080 -2.6092 45 1 10.2700 2.0421 -3.1230 46 1 11.1892 2.9829 -4.3219 47 1 11.5895 5.4618 -2.6707 48 1 10.9803 5.5201 -4.3422 49 1 8.9513 6.4687 -2.6214 50 1 7.7689 9.5411 -2.0831 51 1 6.0606 1.8222 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667029620.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:34 Heat of formation + Delta-G solvation = -44.366161 kcal Electronic energy + Delta-G solvation = -28997.121437 eV Core-core repulsion = 25090.002848 eV Total energy + Delta-G solvation = -3907.118590 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.25913 -39.53513 -37.66017 -36.19135 -34.19611 -33.95692 -32.68732 -31.58346 -30.13406 -29.92397 -27.47115 -26.64669 -26.50340 -25.56508 -22.88671 -22.51753 -22.12332 -21.38697 -20.35620 -18.67737 -17.62728 -17.03803 -16.88030 -16.43051 -16.16720 -15.88202 -15.61993 -15.11931 -14.64195 -14.33156 -14.21917 -13.99107 -13.60371 -13.37704 -13.26771 -13.06003 -12.89055 -12.68281 -12.44460 -12.39569 -12.27252 -12.21736 -12.07185 -11.77791 -11.71974 -11.46958 -11.41133 -11.36996 -11.25444 -10.84710 -10.75611 -10.73845 -10.69012 -10.40466 -9.99804 -9.67814 -9.37772 -8.85246 -8.64325 -8.17656 -8.02576 -6.86774 -5.71312 -3.00208 1.44587 1.65172 3.07865 3.12894 3.40562 3.44508 3.49941 3.52235 3.97007 4.56755 4.57433 4.61453 4.81201 4.89687 4.94112 5.00430 5.08304 5.11039 5.19242 5.27692 5.33694 5.36734 5.42628 5.48109 5.57276 5.59242 5.59622 5.62108 5.65802 5.71054 5.73016 5.74212 5.81787 5.90936 5.97327 6.10635 6.15040 6.19379 6.24036 6.41582 6.42143 6.55439 6.63281 6.77200 6.80995 6.89446 7.06806 7.48708 7.72695 7.83113 8.46446 8.66480 9.58023 10.17321 10.53037 11.50827 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.002670 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.078716 B =10483.906505 C =11881.137605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.319 6.319 5 C 0.123 3.877 6 C -0.211 4.211 7 C -0.079 4.079 8 C -0.131 4.131 9 C -0.021 4.021 10 C -0.101 4.101 11 C 0.521 3.479 12 O -0.531 6.531 13 N -0.599 5.599 14 C 0.081 3.919 15 C 0.125 3.875 16 H 0.099 0.901 17 C -0.154 4.154 18 C 0.143 3.857 19 N -0.727 5.727 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.139 4.139 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.020 0.980 48 H 0.027 0.973 49 H 0.387 0.613 50 H 0.253 0.747 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 -17.513 8.790 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.233 6.233 5 C 0.078 3.922 6 C -0.230 4.230 7 C -0.097 4.097 8 C -0.150 4.150 9 C -0.022 4.022 10 C -0.141 4.141 11 C 0.309 3.691 12 O -0.407 6.407 13 N -0.333 5.333 14 C -0.062 4.062 15 C 0.022 3.978 16 H 0.117 0.883 17 C -0.212 4.212 18 C 0.015 3.985 19 N -0.372 5.372 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.577 5.577 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 C -0.157 4.157 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.038 0.962 48 H 0.045 0.955 49 H 0.221 0.779 50 H 0.063 0.937 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.356 -17.596 8.253 21.155 hybrid contribution -0.033 1.313 0.000 1.313 sum -8.389 -16.283 8.253 20.091 Atomic orbital electron populations 1.21689 0.94355 1.02427 1.02232 1.21478 0.95939 0.95044 1.03662 1.22820 0.78909 0.98525 1.01360 1.86014 1.20915 1.27326 1.89073 1.18817 0.92064 0.83842 0.97428 1.21153 0.99564 0.92535 1.09751 1.20894 0.94602 0.96860 0.97362 1.21073 0.93789 0.98483 1.01619 1.19073 0.93876 0.92437 0.96810 1.20715 0.92562 1.05071 0.95757 1.20290 0.81936 0.76058 0.90860 1.90714 1.54599 1.49205 1.46163 1.47661 1.05636 1.73048 1.06912 1.21703 0.94458 1.00543 0.89501 1.21361 0.98196 0.95171 0.83051 0.88293 1.22044 0.99521 0.97635 1.02026 1.21002 0.93454 0.86550 0.97519 1.42309 1.15162 1.00514 1.79211 1.19258 0.97755 0.83372 1.36627 0.91283 1.24742 0.96226 0.97736 1.02287 1.69699 1.07826 1.29391 1.50742 0.86150 0.77853 0.85208 0.77162 1.20650 1.21939 1.21967 1.20134 0.91236 0.97819 1.06534 0.91802 0.92399 0.92331 0.90827 0.90915 0.92206 0.92114 0.85991 0.85794 0.85223 0.87365 0.88349 0.93388 0.90428 0.91264 0.92454 0.92726 0.91550 0.96207 0.95535 0.77905 0.93675 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.15 0.37 -0.49 16 2 C -0.12 -0.94 6.30 -26.74 -0.17 -1.11 16 3 C 0.06 0.57 4.74 37.16 0.18 0.75 16 4 O -0.32 -4.22 10.14 -19.43 -0.20 -4.42 16 5 C 0.12 1.79 6.69 -39.22 -0.26 1.53 16 6 C -0.21 -2.87 9.04 -39.43 -0.36 -3.23 16 7 C -0.08 -1.14 10.04 -39.60 -0.40 -1.54 16 8 C -0.13 -2.13 9.70 -39.56 -0.38 -2.51 16 9 C -0.02 -0.34 4.37 -104.64 -0.46 -0.79 16 10 C -0.10 -1.46 4.38 -29.03 -0.13 -1.59 16 11 C 0.52 9.49 7.37 -10.99 -0.08 9.41 16 12 O -0.53 -11.88 15.36 5.55 0.09 -11.79 16 13 N -0.60 -9.98 2.24 -173.93 -0.39 -10.37 16 14 C 0.08 1.07 9.30 59.85 0.56 1.62 16 15 C 0.13 2.20 2.80 -67.93 -0.19 2.01 16 16 H 0.10 2.01 6.90 -51.93 -0.36 1.65 16 17 C -0.15 -2.03 9.20 37.16 0.34 -1.69 16 18 C 0.14 2.92 5.50 -4.04 -0.02 2.90 16 19 N -0.73 -18.88 5.43 -59.90 -0.33 -19.21 16 20 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 21 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 24 Si 0.90 22.66 29.55 -169.99 -5.02 17.63 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 C -0.14 -2.09 9.64 -39.43 -0.38 -2.47 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 35 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 36 H 0.12 1.34 6.30 -52.48 -0.33 1.01 16 37 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 39 H 0.11 1.49 7.35 -51.93 -0.38 1.11 16 40 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 1.08 6.53 -51.93 -0.34 0.75 16 43 H 0.07 0.84 6.44 -51.93 -0.33 0.51 16 44 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.02 0.39 6.88 -51.93 -0.36 0.04 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.39 10.89 7.06 -40.82 -0.29 10.60 16 50 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 51 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 413.67 15.07 6.23 6.23 Total: -1.00 -34.98 413.67 -9.14 -44.12 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -8.62 Total: 10.18 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.63 Total: -4.63 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.01 Total: -57.33 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.11 Total: -16.21 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.98 -9.14 -44.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667029620.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.246 kcal (2) G-P(sol) polarization free energy of solvation -34.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds