Wall clock time and date at job start Tue Mar 31 2020 19:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00172 * 179.97438 * 4 3 2 6 6 C 1.38746 * 120.05467 * 359.72752 * 5 4 3 7 7 C 1.38129 * 119.94586 * 179.74253 * 6 5 4 8 8 C 1.38288 * 120.05279 * 0.50650 * 7 6 5 9 9 C 1.38250 * 120.10917 * 359.76642 * 8 7 6 10 10 C 1.50704 * 119.96871 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47316 * 270.02249 * 10 9 8 12 12 O 1.21283 * 119.99814 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99654 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99984 * 180.02562 * 13 11 10 16 16 H 1.08995 * 109.46971 * 359.97438 * 15 13 11 17 17 C 1.53001 * 109.46843 * 239.99787 * 15 13 11 18 18 C 1.53003 * 109.47108 * 119.99919 * 15 13 11 19 19 N 1.46498 * 109.46828 * 304.99821 * 18 15 13 20 20 C 1.36938 * 119.99611 * 180.02562 * 19 18 15 21 21 H 1.08007 * 120.00078 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00125 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99850 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00273 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47220 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47459 * 119.99519 * 24 22 20 27 27 H 1.48507 * 109.46898 * 239.99702 * 24 22 20 28 28 C 1.38162 * 120.05723 * 359.97438 * 9 8 7 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 32 32 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 33 33 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 36 36 H 1.08010 * 120.02919 * 359.97292 * 6 5 4 37 37 H 1.07992 * 119.97408 * 180.25091 * 7 6 5 38 38 H 1.07997 * 119.94352 * 179.74725 * 8 7 6 39 39 H 1.09003 * 109.46632 * 30.02434 * 10 9 8 40 40 H 1.08996 * 109.46429 * 150.02007 * 10 9 8 41 41 H 1.09001 * 109.47208 * 90.00601 * 14 13 11 42 42 H 1.09004 * 109.46875 * 210.00361 * 14 13 11 43 43 H 1.08999 * 109.47342 * 329.99830 * 14 13 11 44 44 H 1.08997 * 109.46781 * 299.99972 * 17 15 13 45 45 H 1.08998 * 109.46915 * 59.99988 * 17 15 13 46 46 H 1.09002 * 109.47211 * 179.97438 * 17 15 13 47 47 H 1.08999 * 109.47146 * 64.99919 * 18 15 13 48 48 H 1.09002 * 109.46686 * 184.99771 * 18 15 13 49 49 H 0.96998 * 120.00411 * 0.02562 * 19 18 15 50 50 H 0.96997 * 120.00109 * 180.02562 * 23 22 20 51 51 H 1.07998 * 120.02891 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0012 6 6 3.3316 3.8176 -0.0070 7 6 3.9610 5.0471 -0.0022 8 6 5.3421 5.1181 -0.0023 9 6 6.0961 3.9593 -0.0023 10 6 7.6009 4.0404 -0.0030 11 6 8.1019 4.0675 -1.4240 12 8 7.3145 4.0247 -2.3455 13 7 9.4250 4.1383 -1.6709 14 6 10.3760 4.1894 -0.5578 15 6 9.9119 4.1652 -3.0523 16 1 9.0650 4.1201 -3.7370 17 6 10.8272 2.9632 -3.2939 18 6 10.6940 5.4582 -3.2923 19 7 9.8547 6.6079 -2.9462 20 6 10.3455 7.8792 -3.0813 21 1 11.3515 8.0341 -3.4425 22 6 9.5504 8.9687 -2.7529 23 7 8.3246 8.7798 -2.3122 24 14 10.2201 10.7028 -2.9365 25 1 11.6136 10.6439 -3.4464 26 1 9.3743 11.4614 -3.8927 27 1 10.2050 11.3816 -1.6157 28 6 5.4712 2.7271 -0.0016 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.2529 3.7627 -0.0114 37 1 3.3742 5.9537 -0.0026 38 1 5.8324 6.0804 -0.0027 39 1 7.9161 4.9486 0.5108 40 1 8.0117 3.1712 0.5106 41 1 10.6669 3.1758 -0.2816 42 1 11.2597 4.7512 -0.8604 43 1 9.9092 4.6791 0.2968 44 1 11.6740 3.0080 -2.6092 45 1 10.2700 2.0421 -3.1230 46 1 11.1892 2.9829 -4.3219 47 1 11.5895 5.4618 -2.6707 48 1 10.9803 5.5201 -4.3422 49 1 8.9513 6.4687 -2.6214 50 1 7.7689 9.5411 -2.0831 51 1 6.0606 1.8222 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667029620.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:33 Heat of formation + Delta-G solvation = -65.148859 kcal Electronic energy + Delta-G solvation = -28998.022643 eV Core-core repulsion = 25090.002848 eV Total energy + Delta-G solvation = -3908.019795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.42464 -40.77386 -38.75321 -37.68601 -35.80392 -34.86633 -34.04155 -33.10584 -31.78306 -31.06274 -28.61047 -27.69584 -27.39904 -27.30486 -24.54898 -23.75211 -23.22192 -22.41343 -21.52454 -20.04581 -19.08986 -18.69941 -18.22612 -17.23862 -17.22660 -17.04712 -17.03004 -16.56220 -16.36917 -15.48569 -15.28525 -15.14257 -15.04742 -14.89555 -14.63236 -14.17326 -14.07330 -13.86851 -13.67698 -13.47306 -13.30926 -13.24474 -13.15535 -13.03839 -12.89198 -12.85313 -12.80570 -12.48633 -12.38982 -12.22349 -12.12934 -12.09339 -11.79952 -11.72364 -11.67091 -11.52307 -10.98931 -10.78283 -9.79224 -9.51104 -9.15003 -8.98599 -7.92585 -5.22408 0.31081 0.49067 1.45294 1.46841 1.56636 1.73300 2.11228 2.22454 2.55418 2.81158 3.39792 3.63958 3.72828 3.83458 3.94173 3.97169 4.01929 4.10038 4.14951 4.19171 4.29035 4.31209 4.36250 4.38791 4.46279 4.49899 4.53257 4.54544 4.61955 4.74353 4.79070 4.81477 4.83783 4.87032 4.95084 5.04431 5.09295 5.10996 5.17412 5.17535 5.29252 5.32547 5.35206 5.46830 5.48775 5.64699 5.71999 5.79338 6.27228 6.46214 6.52332 7.29746 7.33929 8.10132 8.33783 9.30378 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.002670 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.078716 B =10483.906505 C =11881.137605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.050 3.950 4 O -0.330 6.330 5 C 0.118 3.882 6 C -0.211 4.211 7 C -0.085 4.085 8 C -0.160 4.160 9 C -0.031 4.031 10 C -0.093 4.093 11 C 0.511 3.489 12 O -0.584 6.584 13 N -0.599 5.599 14 C 0.075 3.925 15 C 0.129 3.871 16 H 0.062 0.938 17 C -0.140 4.140 18 C 0.141 3.859 19 N -0.741 5.741 20 C -0.243 4.243 21 H 0.078 0.922 22 C -0.077 4.077 23 N -0.966 5.966 24 Si 0.974 3.026 25 H -0.264 1.264 26 H -0.298 1.298 27 H -0.291 1.291 28 C -0.151 4.151 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.039 0.961 48 H 0.027 0.973 49 H 0.372 0.628 50 H 0.249 0.751 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.305 -18.795 9.697 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.025 4.025 4 O -0.244 6.244 5 C 0.073 3.927 6 C -0.229 4.229 7 C -0.103 4.103 8 C -0.178 4.178 9 C -0.032 4.032 10 C -0.132 4.132 11 C 0.301 3.699 12 O -0.464 6.464 13 N -0.331 5.331 14 C -0.067 4.067 15 C 0.025 3.975 16 H 0.081 0.919 17 C -0.199 4.199 18 C 0.014 3.986 19 N -0.384 5.384 20 C -0.374 4.374 21 H 0.096 0.904 22 C -0.269 4.269 23 N -0.617 5.617 24 Si 0.803 3.197 25 H -0.189 1.189 26 H -0.226 1.226 27 H -0.219 1.219 28 C -0.170 4.170 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.155 0.845 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.057 0.943 48 H 0.044 0.956 49 H 0.204 0.796 50 H 0.058 0.942 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.457 -18.910 9.169 22.299 hybrid contribution -0.294 1.637 -0.318 1.694 sum -7.751 -17.273 8.852 20.899 Atomic orbital electron populations 1.21682 0.92735 1.03276 1.02666 1.21498 0.97205 0.93647 1.03464 1.23137 0.77083 1.00144 1.02121 1.86012 1.22933 1.26704 1.88788 1.18995 0.92230 0.84658 0.96790 1.21423 1.00945 0.91779 1.08798 1.21143 0.94136 0.98152 0.96840 1.21123 0.94936 0.98071 1.03690 1.19218 0.94562 0.92512 0.96909 1.20736 0.92042 1.06881 0.93581 1.20952 0.82054 0.75124 0.91808 1.90679 1.55987 1.51830 1.47951 1.47808 1.05882 1.71985 1.07453 1.21966 0.93269 1.03021 0.88418 1.21231 0.97348 0.95657 0.83253 0.91924 1.21944 0.99133 0.95444 1.03343 1.21207 0.93638 0.86176 0.97556 1.42520 1.15122 1.01485 1.79247 1.19676 0.97943 0.84539 1.35275 0.90447 1.25590 0.96623 1.01788 1.02914 1.69878 1.09238 1.30124 1.52462 0.85069 0.77769 0.80114 0.76751 1.18870 1.22578 1.21858 1.20320 0.91950 0.97908 1.06823 0.90778 0.91684 0.92187 0.91431 0.90750 0.90849 0.91848 0.83306 0.84122 0.87130 0.87030 0.84549 0.89416 0.91154 0.90494 0.90284 0.91937 0.90448 0.94307 0.95556 0.79648 0.94240 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 71.98 0.71 -0.70 16 2 C -0.12 -1.68 6.30 30.59 0.19 -1.48 16 3 C 0.05 0.89 4.74 71.98 0.34 1.23 16 4 O -0.33 -8.47 10.14 -92.43 -0.94 -9.41 16 5 C 0.12 3.40 6.69 22.50 0.15 3.55 16 6 C -0.21 -5.63 9.04 22.37 0.20 -5.42 16 7 C -0.08 -2.50 10.04 22.26 0.22 -2.27 16 8 C -0.16 -5.44 9.70 22.28 0.22 -5.23 16 9 C -0.03 -1.01 4.37 -19.88 -0.09 -1.10 16 10 C -0.09 -2.68 4.38 29.10 0.13 -2.55 16 11 C 0.51 18.97 7.37 87.66 0.65 19.61 16 12 O -0.58 -27.44 15.36 -3.04 -0.05 -27.49 16 13 N -0.60 -19.64 2.24 -822.60 -1.85 -21.48 16 14 C 0.08 1.80 9.30 127.77 1.19 2.99 16 15 C 0.13 4.49 2.80 44.99 0.13 4.62 16 16 H 0.06 2.65 6.90 -2.39 -0.02 2.63 16 17 C -0.14 -3.38 9.20 71.98 0.66 -2.72 16 18 C 0.14 5.71 5.50 86.38 0.48 6.18 16 19 N -0.74 -39.07 5.43 -343.44 -1.87 -40.94 16 20 C -0.24 -13.79 9.99 84.03 0.84 -12.95 16 21 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 22 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 23 N -0.97 -60.98 13.06 21.65 0.28 -60.69 16 24 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 25 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 27 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 28 C -0.15 -4.57 9.64 22.36 0.22 -4.35 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.11 7.68 -2.39 -0.02 1.10 16 35 H 0.06 1.10 7.65 -2.39 -0.02 1.08 16 36 H 0.15 3.03 6.30 -2.91 -0.02 3.02 16 37 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 39 H 0.11 3.10 7.35 -2.39 -0.02 3.09 16 40 H 0.14 2.77 8.05 -2.39 -0.02 2.75 16 41 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.81 6.53 -2.39 -0.02 1.79 16 43 H 0.08 1.73 6.44 -2.39 -0.02 1.72 16 44 H 0.08 1.58 7.67 -2.39 -0.02 1.56 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.04 1.45 6.88 -2.39 -0.02 1.43 16 48 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.37 21.69 7.06 -92.71 -0.65 21.04 16 50 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 51 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -78.32 413.67 4.57 -73.75 By element: Atomic # 1 Polarization: 41.62 SS G_CDS: 0.25 Total: 41.87 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 6.70 Total: -4.64 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -3.43 Total: -123.11 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.98 Total: -36.90 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -78.32 4.57 -73.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667029620.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.601 kcal (2) G-P(sol) polarization free energy of solvation -78.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds