Wall clock time and date at job start Tue Mar 31 2020 19:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47359 * 178.14758 * 3 2 1 5 5 C 1.34781 * 119.99804 * 270.00147 * 4 3 2 6 6 O 1.21288 * 119.99710 * 179.97438 * 5 4 3 7 7 C 1.50693 * 119.99954 * 359.97438 * 5 4 3 8 8 C 1.53009 * 109.47040 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47208 * 179.97438 * 8 7 5 10 10 O 1.42896 * 109.46948 * 179.97438 * 9 8 7 11 11 C 1.42906 * 113.99909 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47067 * 179.97438 * 11 10 9 13 13 C 1.31001 * 119.99735 * 135.00331 * 12 11 10 14 14 C 1.46503 * 120.00190 * 89.99209 * 4 3 2 15 15 C 1.53065 * 109.44591 * 299.80651 * 14 4 3 16 16 C 1.53192 * 109.29648 * 181.23295 * 15 14 4 17 17 N 1.46922 * 108.89269 * 305.57538 * 16 15 14 18 18 C 1.36942 * 120.62796 * 233.51528 * 17 16 15 19 19 H 1.08007 * 119.99636 * 151.83092 * 18 17 16 20 20 C 1.38806 * 120.00203 * 331.83144 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08250 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.07925 * 20 18 17 23 23 H 1.48503 * 109.47195 * 89.99708 * 22 20 18 24 24 H 1.48498 * 109.47355 * 210.00264 * 22 20 18 25 25 H 1.48504 * 109.46850 * 330.00278 * 22 20 18 26 26 C 1.46924 * 118.73925 * 53.53382 * 17 16 15 27 27 C 1.53049 * 109.45272 * 60.00640 * 14 4 3 28 28 H 4.40640 * 5.51274 * 179.97438 * 4 1 2 29 29 H 1.08995 * 109.47348 * 58.14387 * 3 2 1 30 30 H 1.09006 * 109.47002 * 298.14839 * 3 2 1 31 31 H 1.08999 * 109.46933 * 299.99654 * 7 5 4 32 32 H 1.08997 * 109.47484 * 60.00388 * 7 5 4 33 33 H 1.09003 * 109.46554 * 300.00221 * 8 7 5 34 34 H 1.09000 * 109.47028 * 59.99294 * 8 7 5 35 35 H 1.08993 * 109.46986 * 300.00037 * 9 8 7 36 36 H 1.09003 * 109.46692 * 59.99844 * 9 8 7 37 37 H 1.08997 * 109.47209 * 300.00721 * 11 10 9 38 38 H 1.09004 * 109.46472 * 60.00108 * 11 10 9 39 39 H 1.07999 * 120.00082 * 315.00412 * 12 11 10 40 40 H 1.08006 * 119.99954 * 180.02562 * 13 12 11 41 41 H 1.07999 * 120.00183 * 0.02562 * 13 12 11 42 42 H 1.08996 * 109.45813 * 179.97438 * 14 4 3 43 43 H 1.09005 * 109.39523 * 61.35360 * 15 14 4 44 44 H 1.09004 * 109.62174 * 301.25047 * 15 14 4 45 45 H 1.09003 * 109.58615 * 185.71531 * 16 15 14 46 46 H 1.08998 * 109.58372 * 65.43477 * 16 15 14 47 47 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 48 48 H 1.09007 * 109.58325 * 66.18371 * 26 17 16 49 49 H 1.08996 * 109.58499 * 186.46256 * 26 17 16 50 50 H 1.09002 * 109.49883 * 58.67895 * 27 14 4 51 51 H 1.08997 * 109.52642 * 298.59203 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3813 -0.0446 5 6 3.3581 1.9787 -1.2318 6 8 3.7615 3.1219 -1.2688 7 6 3.1078 1.2262 -2.5132 8 6 3.4393 2.1254 -3.7059 9 6 3.1858 1.3612 -5.0069 10 8 3.4948 2.2013 -6.1207 11 6 3.2918 1.5799 -7.3914 12 6 3.6460 2.5510 -8.4879 13 6 4.3692 2.1545 -9.5056 14 6 3.3775 2.1128 1.2011 15 6 2.0744 2.2100 1.9982 16 6 2.3262 3.0019 3.2852 17 7 3.4389 2.3805 4.0162 18 6 3.2939 2.0144 5.3278 19 1 3.8746 1.1959 5.7273 20 6 2.4009 2.6950 6.1438 21 7 1.9456 3.8754 5.7805 22 14 1.8450 1.9358 7.7575 23 1 2.7688 2.3503 8.8438 24 1 0.4696 2.3978 8.0741 25 1 1.8546 0.4557 7.6374 26 6 4.7101 2.1597 3.3134 27 6 4.4328 1.3742 2.0277 28 1 -1.0501 -0.0005 -0.0002 29 1 3.0096 -0.5415 -0.8728 30 1 3.0096 -0.4840 0.9062 31 1 3.7388 0.3378 -2.5420 32 1 2.0601 0.9295 -2.5616 33 1 2.8087 3.0141 -3.6772 34 1 4.4871 2.4218 -3.6572 35 1 3.8166 0.4729 -5.0352 36 1 2.1380 1.0645 -5.0556 37 1 3.9254 0.6964 -7.4692 38 1 2.2464 1.2870 -7.4897 39 1 3.3037 3.5740 -8.4346 40 1 4.6235 2.8506 -10.2913 41 1 4.7112 1.1314 -9.5591 42 1 3.7347 3.1161 0.9691 43 1 1.7283 1.2075 2.2497 44 1 1.3170 2.7177 1.4009 45 1 1.4291 2.9879 3.9043 46 1 2.5823 4.0317 3.0363 47 1 1.3219 4.3512 6.3509 48 1 5.1617 3.1201 3.0647 49 1 5.3869 1.5921 3.9520 50 1 5.3525 1.2869 1.4492 51 1 4.0665 0.3794 2.2810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671465134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:15 Heat of formation + Delta-G solvation = 12.130397 kcal Electronic energy + Delta-G solvation = -28670.117821 eV Core-core repulsion = 24765.449106 eV Total energy + Delta-G solvation = -3904.668715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.18532 -38.51780 -37.51786 -35.64551 -34.74176 -33.45735 -32.92122 -32.06992 -30.27255 -29.62294 -27.76247 -27.12395 -25.88035 -24.78804 -22.59242 -22.19069 -21.48879 -20.27592 -19.60185 -19.21531 -17.96912 -17.17833 -16.96045 -16.72915 -16.67814 -15.93258 -15.75625 -15.29896 -14.78891 -14.55679 -14.05123 -13.87993 -13.71641 -13.55741 -13.32878 -13.23945 -13.02469 -12.80524 -12.73751 -12.49802 -12.27600 -12.06829 -11.51125 -11.46598 -11.28217 -11.19793 -11.13871 -10.95936 -10.71345 -10.53902 -10.42568 -10.20532 -10.16414 -10.15373 -10.05671 -9.77503 -9.70163 -9.67014 -9.45487 -8.60871 -8.39153 -6.67643 -5.78651 -3.21358 1.73617 2.47093 2.73435 2.82730 3.23747 3.37103 3.44146 3.46054 3.57794 4.35262 4.46004 4.49426 4.56653 4.68029 4.71976 4.89579 4.93611 4.99671 5.03684 5.12856 5.16122 5.20876 5.30521 5.34651 5.41013 5.44564 5.48070 5.51643 5.63068 5.85528 5.90108 5.93039 6.07506 6.08987 6.14182 6.22776 6.23277 6.32764 6.48512 6.59423 6.64149 6.78102 6.87629 6.89148 6.95608 7.35985 7.49143 7.60951 7.67329 7.79417 8.27099 8.45151 9.21063 9.84516 10.41489 11.30045 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026293 B = 0.002003 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.685369 B =13978.879301 C =14369.728740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.204 4.204 3 C 0.216 3.784 4 N -0.603 5.603 5 C 0.515 3.485 6 O -0.535 6.535 7 C -0.138 4.138 8 C -0.103 4.103 9 C 0.063 3.937 10 O -0.383 6.383 11 C 0.088 3.912 12 C -0.151 4.151 13 C -0.182 4.182 14 C 0.144 3.856 15 C -0.141 4.141 16 C 0.174 3.826 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.148 3.852 27 C -0.138 4.138 28 H 0.215 0.785 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.020 0.980 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 -10.284 -24.488 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C 0.093 3.907 4 N -0.334 5.334 5 C 0.303 3.697 6 O -0.412 6.412 7 C -0.178 4.178 8 C -0.141 4.141 9 C -0.013 4.013 10 O -0.303 6.303 11 C 0.011 3.989 12 C -0.169 4.169 13 C -0.219 4.219 14 C 0.042 3.958 15 C -0.181 4.181 16 C 0.047 3.953 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.020 3.980 27 C -0.178 4.178 28 H 0.232 0.768 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.107 0.893 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.705 -9.358 -24.371 26.115 hybrid contribution -0.839 -0.715 0.849 1.391 sum -0.133 -10.073 -23.522 25.588 Atomic orbital electron populations 1.24922 0.95914 0.98706 1.00869 1.23521 0.94899 1.01521 1.00613 1.18386 0.83848 0.84145 1.04307 1.48299 1.64767 1.13567 1.06814 1.20548 0.77180 0.87004 0.84979 1.90715 1.45565 1.17846 1.87045 1.21604 1.03858 0.99707 0.92642 1.21220 1.04280 0.98632 0.90001 1.22525 0.99221 0.93298 0.86278 1.87931 1.88545 1.40517 1.13264 1.21534 0.99907 0.94511 0.82907 1.22770 0.99172 1.00225 0.94701 1.23844 0.97995 1.01498 0.98554 1.21251 0.96663 0.96412 0.81427 1.22537 0.95147 1.01756 0.98706 1.20752 0.93322 0.92344 0.88840 1.44075 1.06840 1.71761 1.08743 1.19157 1.22746 1.10532 0.85854 0.91693 1.25054 1.01792 0.95053 0.97687 1.70032 1.34629 1.11632 1.38293 0.86321 0.77962 0.78858 0.83759 1.21378 1.21591 1.20520 1.20859 0.89563 0.96381 0.91147 1.22384 0.97290 1.00094 0.98079 0.76775 0.88497 0.87523 0.88819 0.88826 0.90224 0.90180 0.93227 0.93231 0.92818 0.92370 0.86502 0.87759 0.88448 0.88511 0.92381 0.93295 0.89261 0.96237 0.93606 0.96190 0.92417 0.92745 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 19.25 29.55 0.57 -1.58 16 2 C -0.20 -2.52 11.92 -37.12 -0.44 -2.96 16 3 C 0.22 2.43 5.16 -6.83 -0.04 2.39 16 4 N -0.60 -8.64 2.37 -169.35 -0.40 -9.04 16 5 C 0.51 7.48 7.67 -10.99 -0.08 7.39 16 6 O -0.54 -9.99 15.31 5.55 0.08 -9.90 16 7 C -0.14 -1.36 4.25 -27.88 -0.12 -1.47 16 8 C -0.10 -1.10 4.87 -26.73 -0.13 -1.23 16 9 C 0.06 0.54 5.94 37.16 0.22 0.76 16 10 O -0.38 -4.03 10.33 -35.23 -0.36 -4.40 16 11 C 0.09 0.68 6.35 36.00 0.23 0.90 16 12 C -0.15 -1.12 9.89 -36.03 -0.36 -1.48 16 13 C -0.18 -1.09 14.31 29.01 0.42 -0.67 16 14 C 0.14 2.55 2.48 -67.87 -0.17 2.38 16 15 C -0.14 -2.78 4.75 -26.60 -0.13 -2.90 16 16 C 0.17 4.21 5.30 -3.71 -0.02 4.19 16 17 N -0.59 -14.74 3.00 -172.32 -0.52 -15.26 16 18 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 19 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -26.28 11.20 55.49 0.62 -25.66 16 22 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 27 C -0.14 -2.36 5.31 -26.61 -0.14 -2.51 16 28 H 0.22 1.81 7.80 -54.08 -0.42 1.39 16 29 H 0.10 0.75 6.44 -51.93 -0.33 0.42 16 30 H 0.11 1.21 6.46 -51.93 -0.34 0.87 16 31 H 0.09 0.68 7.40 -51.93 -0.38 0.29 16 32 H 0.09 0.82 7.95 -51.93 -0.41 0.40 16 33 H 0.08 0.99 8.10 -51.93 -0.42 0.56 16 34 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 0.35 7.86 -51.93 -0.41 -0.06 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.10 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.10 0.49 7.90 -52.49 -0.41 0.07 16 42 H 0.10 1.96 6.90 -51.93 -0.36 1.61 16 43 H 0.06 1.14 7.01 -51.93 -0.36 0.78 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 50 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.06 1.00 6.72 -51.93 -0.35 0.65 16 LS Contribution 413.51 15.07 6.23 6.23 Total: -1.00 -33.05 413.51 -8.52 -41.57 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.70 Total: 0.67 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.44 Total: -0.77 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.30 Total: -49.96 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.28 Total: -14.30 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.05 -8.52 -41.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671465134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.700 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds