Wall clock time and date at job start Tue Mar 31 2020 19:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47359 * 178.14758 * 3 2 1 5 5 C 1.34781 * 119.99804 * 270.00147 * 4 3 2 6 6 O 1.21288 * 119.99710 * 179.97438 * 5 4 3 7 7 C 1.50693 * 119.99954 * 359.97438 * 5 4 3 8 8 C 1.53009 * 109.47040 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47208 * 179.97438 * 8 7 5 10 10 O 1.42896 * 109.46948 * 179.97438 * 9 8 7 11 11 C 1.42906 * 113.99909 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47067 * 179.97438 * 11 10 9 13 13 C 1.31001 * 119.99735 * 135.00331 * 12 11 10 14 14 C 1.46503 * 120.00190 * 89.99209 * 4 3 2 15 15 C 1.53065 * 109.44591 * 299.80651 * 14 4 3 16 16 C 1.53192 * 109.29648 * 181.23295 * 15 14 4 17 17 N 1.46922 * 108.89269 * 305.57538 * 16 15 14 18 18 C 1.36942 * 120.62796 * 233.51528 * 17 16 15 19 19 H 1.08007 * 119.99636 * 151.83092 * 18 17 16 20 20 C 1.38806 * 120.00203 * 331.83144 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08250 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.07925 * 20 18 17 23 23 H 1.48503 * 109.47195 * 89.99708 * 22 20 18 24 24 H 1.48498 * 109.47355 * 210.00264 * 22 20 18 25 25 H 1.48504 * 109.46850 * 330.00278 * 22 20 18 26 26 C 1.46924 * 118.73925 * 53.53382 * 17 16 15 27 27 C 1.53049 * 109.45272 * 60.00640 * 14 4 3 28 28 H 4.40640 * 5.51274 * 179.97438 * 4 1 2 29 29 H 1.08995 * 109.47348 * 58.14387 * 3 2 1 30 30 H 1.09006 * 109.47002 * 298.14839 * 3 2 1 31 31 H 1.08999 * 109.46933 * 299.99654 * 7 5 4 32 32 H 1.08997 * 109.47484 * 60.00388 * 7 5 4 33 33 H 1.09003 * 109.46554 * 300.00221 * 8 7 5 34 34 H 1.09000 * 109.47028 * 59.99294 * 8 7 5 35 35 H 1.08993 * 109.46986 * 300.00037 * 9 8 7 36 36 H 1.09003 * 109.46692 * 59.99844 * 9 8 7 37 37 H 1.08997 * 109.47209 * 300.00721 * 11 10 9 38 38 H 1.09004 * 109.46472 * 60.00108 * 11 10 9 39 39 H 1.07999 * 120.00082 * 315.00412 * 12 11 10 40 40 H 1.08006 * 119.99954 * 180.02562 * 13 12 11 41 41 H 1.07999 * 120.00183 * 0.02562 * 13 12 11 42 42 H 1.08996 * 109.45813 * 179.97438 * 14 4 3 43 43 H 1.09005 * 109.39523 * 61.35360 * 15 14 4 44 44 H 1.09004 * 109.62174 * 301.25047 * 15 14 4 45 45 H 1.09003 * 109.58615 * 185.71531 * 16 15 14 46 46 H 1.08998 * 109.58372 * 65.43477 * 16 15 14 47 47 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 48 48 H 1.09007 * 109.58325 * 66.18371 * 26 17 16 49 49 H 1.08996 * 109.58499 * 186.46256 * 26 17 16 50 50 H 1.09002 * 109.49883 * 58.67895 * 27 14 4 51 51 H 1.08997 * 109.52642 * 298.59203 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3813 -0.0446 5 6 3.3581 1.9787 -1.2318 6 8 3.7615 3.1219 -1.2688 7 6 3.1078 1.2262 -2.5132 8 6 3.4393 2.1254 -3.7059 9 6 3.1858 1.3612 -5.0069 10 8 3.4948 2.2013 -6.1207 11 6 3.2918 1.5799 -7.3914 12 6 3.6460 2.5510 -8.4879 13 6 4.3692 2.1545 -9.5056 14 6 3.3775 2.1128 1.2011 15 6 2.0744 2.2100 1.9982 16 6 2.3262 3.0019 3.2852 17 7 3.4389 2.3805 4.0162 18 6 3.2939 2.0144 5.3278 19 1 3.8746 1.1959 5.7273 20 6 2.4009 2.6950 6.1438 21 7 1.9456 3.8754 5.7805 22 14 1.8450 1.9358 7.7575 23 1 2.7688 2.3503 8.8438 24 1 0.4696 2.3978 8.0741 25 1 1.8546 0.4557 7.6374 26 6 4.7101 2.1597 3.3134 27 6 4.4328 1.3742 2.0277 28 1 -1.0501 -0.0005 -0.0002 29 1 3.0096 -0.5415 -0.8728 30 1 3.0096 -0.4840 0.9062 31 1 3.7388 0.3378 -2.5420 32 1 2.0601 0.9295 -2.5616 33 1 2.8087 3.0141 -3.6772 34 1 4.4871 2.4218 -3.6572 35 1 3.8166 0.4729 -5.0352 36 1 2.1380 1.0645 -5.0556 37 1 3.9254 0.6964 -7.4692 38 1 2.2464 1.2870 -7.4897 39 1 3.3037 3.5740 -8.4346 40 1 4.6235 2.8506 -10.2913 41 1 4.7112 1.1314 -9.5591 42 1 3.7347 3.1161 0.9691 43 1 1.7283 1.2075 2.2497 44 1 1.3170 2.7177 1.4009 45 1 1.4291 2.9879 3.9043 46 1 2.5823 4.0317 3.0363 47 1 1.3219 4.3512 6.3509 48 1 5.1617 3.1201 3.0647 49 1 5.3869 1.5921 3.9520 50 1 5.3525 1.2869 1.4492 51 1 4.0665 0.3794 2.2810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671465134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:14 Heat of formation + Delta-G solvation = -6.866055 kcal Electronic energy + Delta-G solvation = -28670.941569 eV Core-core repulsion = 24765.449106 eV Total energy + Delta-G solvation = -3905.492463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.38312 -39.30871 -38.93400 -37.01591 -35.43272 -34.69961 -33.90258 -33.41911 -31.96893 -31.34494 -28.60515 -28.17043 -26.93551 -26.15413 -23.95718 -23.86815 -22.63938 -20.87879 -20.80918 -20.61127 -19.04139 -18.64029 -18.09571 -17.72530 -17.43267 -17.07010 -16.73801 -16.61853 -16.03747 -15.61055 -15.42397 -15.31126 -14.90556 -14.78637 -14.63427 -14.40536 -14.20569 -14.08277 -14.01363 -13.49965 -13.22410 -13.14570 -13.03396 -12.84355 -12.67295 -12.53668 -12.25698 -12.15185 -12.03316 -11.95058 -11.93056 -11.80797 -11.55701 -11.38398 -11.28693 -11.09863 -10.79593 -10.72377 -10.57613 -10.22825 -9.80588 -8.72125 -7.88326 -5.34664 1.23939 1.44276 1.47487 1.48360 1.58300 1.65433 1.95330 2.32947 2.51076 2.86014 3.27892 3.52372 3.57244 3.64797 3.87541 3.96318 3.97584 4.07551 4.19050 4.21003 4.25504 4.30090 4.37191 4.44806 4.45415 4.47372 4.53285 4.57315 4.62871 4.64329 4.72148 4.78075 4.85078 4.98894 5.02955 5.06084 5.09645 5.11349 5.16207 5.25588 5.28575 5.43778 5.55501 5.62689 5.66449 5.67010 5.72866 6.29611 6.37406 6.39078 6.74078 7.12436 7.14746 7.82898 8.36282 9.18935 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026293 B = 0.002003 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.685369 B =13978.879301 C =14369.728740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.231 4.231 3 C 0.211 3.789 4 N -0.600 5.600 5 C 0.508 3.492 6 O -0.587 6.587 7 C -0.124 4.124 8 C -0.100 4.100 9 C 0.066 3.934 10 O -0.415 6.415 11 C 0.085 3.915 12 C -0.177 4.177 13 C -0.170 4.170 14 C 0.153 3.847 15 C -0.119 4.119 16 C 0.182 3.818 17 N -0.607 5.607 18 C -0.262 4.262 19 H 0.073 0.927 20 C -0.053 4.053 21 N -0.939 5.939 22 Si 0.969 3.031 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.266 1.266 26 C 0.142 3.858 27 C -0.121 4.121 28 H 0.237 0.763 29 H 0.142 0.858 30 H 0.110 0.890 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.057 0.943 46 H -0.014 1.014 47 H 0.249 0.751 48 H 0.006 0.994 49 H 0.066 0.934 50 H 0.079 0.921 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 -14.016 -26.112 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.232 4.232 3 C 0.090 3.910 4 N -0.330 5.330 5 C 0.299 3.701 6 O -0.467 6.467 7 C -0.163 4.163 8 C -0.138 4.138 9 C -0.010 4.010 10 O -0.335 6.335 11 C 0.009 3.991 12 C -0.195 4.195 13 C -0.206 4.206 14 C 0.049 3.951 15 C -0.159 4.159 16 C 0.056 3.944 17 N -0.330 5.330 18 C -0.392 4.392 19 H 0.091 0.909 20 C -0.248 4.248 21 N -0.585 5.585 22 Si 0.797 3.203 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.191 1.191 26 C 0.016 3.984 27 C -0.161 4.161 28 H 0.253 0.747 29 H 0.160 0.840 30 H 0.128 0.872 31 H 0.152 0.848 32 H 0.132 0.868 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.004 0.996 47 H 0.058 0.942 48 H 0.024 0.976 49 H 0.085 0.915 50 H 0.098 0.902 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.911 -13.146 -26.024 29.170 hybrid contribution -0.869 0.501 1.297 1.640 sum 0.042 -12.645 -24.727 27.773 Atomic orbital electron populations 1.25652 0.96888 0.97667 1.00287 1.23881 0.95610 1.02392 1.01290 1.18764 0.83443 0.82166 1.06627 1.48211 1.64681 1.14729 1.05405 1.21448 0.75812 0.86602 0.86237 1.90703 1.47846 1.20366 1.87754 1.21604 1.05844 0.99884 0.88984 1.21142 1.02393 0.98314 0.91997 1.22544 1.00736 0.93160 0.84582 1.87892 1.88932 1.42069 1.14619 1.21682 1.00905 0.94791 0.81717 1.22836 1.00839 1.00152 0.95703 1.24056 0.96311 1.02311 0.97943 1.20812 0.95411 0.95812 0.83018 1.22206 0.96345 1.00836 0.96498 1.20482 0.91994 0.91595 0.90356 1.44311 1.08370 1.71721 1.08640 1.19553 1.22406 1.10380 0.86822 0.90930 1.25865 1.02300 0.95426 1.01198 1.70208 1.35473 1.13157 1.39632 0.85258 0.76890 0.78558 0.79624 1.21175 1.22138 1.19071 1.21031 0.88051 0.96478 0.92876 1.22173 0.98217 0.99677 0.95987 0.74672 0.84047 0.87202 0.84809 0.86813 0.93084 0.92155 0.90834 0.91594 0.91353 0.91370 0.87502 0.86800 0.87129 0.91750 0.91761 0.93650 0.92469 0.99579 0.94171 0.97629 0.91516 0.90206 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.83 19.25 74.32 1.43 -2.39 16 2 C -0.23 -5.01 11.92 31.12 0.37 -4.63 16 3 C 0.21 3.97 5.16 84.57 0.44 4.40 16 4 N -0.60 -16.04 2.37 -808.10 -1.91 -17.95 16 5 C 0.51 14.10 7.67 87.65 0.67 14.78 16 6 O -0.59 -22.41 15.31 -3.06 -0.05 -22.46 16 7 C -0.12 -2.05 4.25 29.85 0.13 -1.92 16 8 C -0.10 -2.02 4.87 30.60 0.15 -1.87 16 9 C 0.07 0.97 5.94 71.98 0.43 1.39 16 10 O -0.41 -8.29 10.33 -148.98 -1.54 -9.83 16 11 C 0.08 1.17 6.35 71.23 0.45 1.62 16 12 C -0.18 -2.49 9.89 25.64 0.25 -2.23 16 13 C -0.17 -1.74 14.31 67.78 0.97 -0.77 16 14 C 0.15 5.36 2.48 45.03 0.11 5.48 16 15 C -0.12 -4.72 4.75 30.68 0.15 -4.58 16 16 C 0.18 9.23 5.30 86.36 0.46 9.68 16 17 N -0.61 -30.83 3.00 -699.10 -2.09 -32.92 16 18 C -0.26 -14.34 9.58 84.03 0.81 -13.54 16 19 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 20 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 21 N -0.94 -56.74 11.20 21.65 0.24 -56.50 16 22 Si 0.97 44.81 29.59 68.60 2.03 46.84 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C 0.14 5.91 6.52 86.36 0.56 6.47 16 27 C -0.12 -3.93 5.31 30.67 0.16 -3.77 16 28 H 0.24 3.36 7.80 -4.41 -0.03 3.33 16 29 H 0.14 1.39 6.44 -2.39 -0.02 1.37 16 30 H 0.11 2.04 6.46 -2.38 -0.02 2.03 16 31 H 0.13 1.20 7.40 -2.39 -0.02 1.18 16 32 H 0.11 1.52 7.95 -2.39 -0.02 1.50 16 33 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 34 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.71 7.86 -2.39 -0.02 0.69 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.11 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.11 0.91 8.06 -2.91 -0.02 0.88 16 41 H 0.11 0.83 7.90 -2.91 -0.02 0.80 16 42 H 0.06 2.71 6.90 -2.39 -0.02 2.70 16 43 H 0.06 2.48 7.01 -2.38 -0.02 2.46 16 44 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.06 3.24 6.06 -2.39 -0.01 3.23 16 46 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 47 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 49 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 50 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.08 2.29 6.72 -2.39 -0.02 2.28 16 Total: -1.00 -76.41 413.51 5.51 -70.90 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.88 Total: 16.35 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 7.95 Total: 5.56 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -3.77 Total: -107.37 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.59 Total: -32.28 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.41 5.51 -70.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671465134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.034 kcal (2) G-P(sol) polarization free energy of solvation -76.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds