Wall clock time and date at job start Tue Mar 31 2020 19:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47500 * 2 1 4 4 O 1.42904 * 109.47153 * 119.99957 * 2 1 3 5 5 C 1.35895 * 116.99964 * 86.47360 * 4 2 1 6 6 C 1.38754 * 120.05986 * 354.59892 * 5 4 2 7 7 C 1.38122 * 119.94493 * 180.02562 * 6 5 4 8 8 C 1.38284 * 120.05832 * 359.97438 * 7 6 5 9 9 C 1.38251 * 120.11086 * 0.02562 * 8 7 6 10 10 C 1.38162 * 120.05191 * 359.97438 * 9 8 7 11 11 C 1.50706 * 120.02491 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47130 * 265.02430 * 11 10 9 13 13 O 1.21283 * 119.99942 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99994 * 179.97438 * 12 11 10 15 15 C 1.46492 * 120.00021 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47247 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.47029 * 180.02562 * 16 15 14 18 18 N 1.46505 * 109.46797 * 180.02562 * 17 16 15 19 19 C 1.46505 * 119.99774 * 270.00403 * 18 17 16 20 20 C 1.36930 * 119.99685 * 90.00178 * 18 17 16 21 21 H 1.07992 * 120.00571 * 22.49678 * 20 18 17 22 22 C 1.38815 * 119.99557 * 202.49202 * 20 18 17 23 23 N 1.31618 * 120.00558 * 13.88754 * 22 20 18 24 24 Si 1.86808 * 119.99873 * 193.87818 * 22 20 18 25 25 H 1.48495 * 109.46899 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46757 * 120.00145 * 24 22 20 27 27 H 1.48498 * 109.47152 * 240.00433 * 24 22 20 28 28 H 1.08995 * 109.47192 * 300.00540 * 1 2 3 29 29 H 1.09004 * 109.46531 * 60.00273 * 1 2 3 30 30 H 1.08995 * 109.46988 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47192 * 239.99460 * 2 1 3 32 32 H 1.08998 * 109.46953 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.46600 * 299.99785 * 3 2 1 34 34 H 1.08995 * 109.47339 * 59.99550 * 3 2 1 35 35 H 1.07996 * 120.02303 * 359.97438 * 6 5 4 36 36 H 1.08005 * 119.96684 * 179.71932 * 7 6 5 37 37 H 1.08002 * 119.94399 * 179.97438 * 8 7 6 38 38 H 1.07999 * 119.97150 * 179.97438 * 9 8 7 39 39 H 1.09005 * 109.46761 * 25.02188 * 11 10 9 40 40 H 1.08994 * 109.46923 * 145.02225 * 11 10 9 41 41 H 0.97004 * 119.99841 * 0.02562 * 14 12 11 42 42 H 1.08993 * 109.47600 * 300.00266 * 15 14 12 43 43 H 1.09001 * 109.47323 * 60.00216 * 15 14 12 44 44 H 1.08999 * 109.47234 * 300.00232 * 16 15 14 45 45 H 1.09000 * 109.46897 * 60.00607 * 16 15 14 46 46 H 1.08999 * 109.47288 * 300.00182 * 17 16 15 47 47 H 1.09000 * 109.46799 * 60.00531 * 17 16 15 48 48 H 1.08997 * 109.47345 * 95.10597 * 19 18 17 49 49 H 1.09006 * 109.46634 * 215.10440 * 19 18 17 50 50 H 1.08999 * 109.47083 * 335.10100 * 19 18 17 51 51 H 0.96996 * 120.00451 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1418 -2.0235 1.0878 6 6 1.7181 -2.6992 -0.0476 7 6 1.8564 -4.0713 -0.1252 8 6 2.4171 -4.7716 0.9272 9 6 2.8400 -4.1007 2.0596 10 6 2.7038 -2.7283 2.1421 11 6 3.1646 -1.9976 3.3770 12 6 1.9989 -1.8091 4.3134 13 8 0.9021 -2.2273 4.0082 14 7 2.1754 -1.1766 5.4904 15 6 1.0422 -0.9929 6.4003 16 6 1.5100 -0.2512 7.6542 17 6 0.3265 -0.0598 8.6048 18 7 0.7743 0.6509 9.8051 19 6 1.2660 -0.1021 10.9616 20 6 0.7333 2.0190 9.8460 21 1 0.0650 2.5590 9.1917 22 6 1.5507 2.7118 10.7284 23 7 2.5487 2.0942 11.3242 24 14 1.2346 4.5209 11.0702 25 1 0.0617 4.9761 10.2814 26 1 0.9612 4.7108 12.5175 27 1 2.4293 5.3138 10.6839 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6768 1.9564 0.8899 35 1 1.2798 -2.1528 -0.8696 36 1 1.5226 -4.5982 -1.0070 37 1 2.5239 -5.8445 0.8647 38 1 3.2772 -4.6499 2.8804 39 1 3.9403 -2.5793 3.8751 40 1 3.5652 -1.0240 3.0949 41 1 3.0528 -0.8425 5.7346 42 1 0.2670 -0.4107 5.9023 43 1 0.6409 -1.9663 6.6821 44 1 2.2854 -0.8330 8.1525 45 1 1.9109 0.7224 7.3721 46 1 -0.4493 0.5218 8.1068 47 1 -0.0740 -1.0335 8.8869 48 1 2.3528 -0.1707 10.9152 49 1 0.9730 0.4086 11.8790 50 1 0.8378 -1.1045 10.9512 51 1 3.1201 2.5783 11.9406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712977679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:23 Heat of formation + Delta-G solvation = -40.864794 kcal Electronic energy + Delta-G solvation = -28483.849478 eV Core-core repulsion = 24576.882719 eV Total energy + Delta-G solvation = -3906.966759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.70841 -39.29782 -37.82678 -36.18120 -34.62103 -33.69793 -32.70617 -31.86498 -30.22266 -29.89151 -27.72729 -27.50174 -25.89240 -25.01847 -23.62344 -22.30454 -21.57360 -20.97320 -20.58819 -19.81965 -18.34440 -16.83256 -16.73823 -16.38912 -16.17853 -15.60894 -15.41275 -15.29504 -14.86382 -14.66545 -14.40033 -13.95905 -13.75456 -13.48798 -13.30543 -13.21845 -13.01843 -12.89178 -12.63095 -12.60224 -12.44427 -12.19660 -12.04961 -11.60301 -11.51738 -11.38316 -11.26025 -11.02087 -10.99471 -10.84071 -10.79919 -10.70497 -10.45664 -10.05022 -9.91256 -9.75590 -9.69124 -8.99360 -8.79730 -8.54152 -8.26163 -6.74597 -5.71377 -3.16721 1.14055 1.31492 2.85328 2.98824 3.33435 3.38540 3.45639 3.47885 3.73969 4.42417 4.51590 4.52346 4.57269 4.63704 4.75183 4.85210 4.98378 5.08837 5.10559 5.23641 5.31644 5.34252 5.36199 5.40381 5.45078 5.46576 5.47382 5.59961 5.62320 5.80118 5.84634 5.90442 5.92383 6.01021 6.16023 6.18421 6.26220 6.32090 6.36630 6.48265 6.63773 6.71673 6.78640 6.87700 7.05386 7.28084 7.37919 7.72898 7.74176 7.82599 8.41371 8.44319 9.25331 9.89228 10.38342 11.33637 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.002202 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.336739 B =12713.778656 C =13936.031862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 C -0.150 4.150 4 O -0.305 6.305 5 C 0.150 3.850 6 C -0.212 4.212 7 C -0.082 4.082 8 C -0.159 4.159 9 C -0.070 4.070 10 C -0.096 4.096 11 C -0.095 4.095 12 C 0.514 3.486 13 O -0.538 6.538 14 N -0.728 5.728 15 C 0.121 3.879 16 C -0.149 4.149 17 C 0.156 3.844 18 N -0.603 5.603 19 C 0.162 3.838 20 C -0.252 4.252 21 H 0.069 0.931 22 C 0.000 4.000 23 N -0.908 5.908 24 Si 0.903 3.097 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.291 1.291 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.400 0.600 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.045 0.955 47 H 0.038 0.962 48 H 0.030 0.970 49 H 0.040 0.960 50 H -0.002 1.002 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.450 -10.151 -25.167 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.219 6.219 5 C 0.104 3.896 6 C -0.231 4.231 7 C -0.101 4.101 8 C -0.178 4.178 9 C -0.088 4.088 10 C -0.097 4.097 11 C -0.135 4.135 12 C 0.300 3.700 13 O -0.415 6.415 14 N -0.380 5.380 15 C -0.002 4.002 16 C -0.190 4.190 17 C 0.028 3.972 18 N -0.325 5.325 19 C 0.017 3.983 20 C -0.382 4.382 21 H 0.086 0.914 22 C -0.198 4.198 23 N -0.553 5.553 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.218 1.218 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.234 0.766 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.048 0.952 49 H 0.059 0.941 50 H 0.017 0.983 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.771 -10.232 -25.057 27.123 hybrid contribution 0.343 1.130 0.155 1.191 sum 2.114 -9.102 -24.901 26.597 Atomic orbital electron populations 1.22360 0.94932 1.03206 1.03187 1.22444 0.94537 0.93657 0.87230 1.21869 1.02028 0.93548 1.03252 1.86144 1.80768 1.16601 1.38349 1.18730 0.94339 0.82729 0.93813 1.21206 1.07505 0.95699 0.98692 1.20896 0.97337 0.93364 0.98459 1.20975 1.02539 0.99889 0.94360 1.20851 0.97885 0.92385 0.97670 1.18646 1.03626 0.93265 0.94171 1.20494 0.97244 1.02647 0.93145 1.20460 0.90100 0.77714 0.81716 1.90691 1.26461 1.49393 1.74970 1.46156 1.13541 1.59181 1.19115 1.21459 0.88432 1.00238 0.90115 1.22535 1.01968 1.00126 0.94355 1.20720 0.93605 0.95244 0.87627 1.43999 1.75422 1.02942 1.10151 1.20796 0.97426 0.90331 0.89721 1.19256 1.16727 0.81792 1.20387 0.91359 1.25018 0.95906 0.97851 1.01069 1.70077 1.17388 1.35437 1.32407 0.86208 0.77505 0.85171 0.77824 1.20322 1.21637 1.21788 0.91162 0.91162 0.91826 0.91028 0.91668 0.90569 0.91209 0.85473 0.86048 0.85991 0.85529 0.88203 0.87786 0.76619 0.92031 0.92160 0.92214 0.91332 0.93674 0.94317 0.95206 0.94094 0.98318 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.21 37.16 0.34 -1.23 16 2 C 0.08 0.69 2.84 -26.73 -0.08 0.61 16 3 C -0.15 -1.11 9.56 37.16 0.36 -0.76 16 4 O -0.30 -3.69 8.93 -19.41 -0.17 -3.87 16 5 C 0.15 1.82 6.59 -39.22 -0.26 1.56 16 6 C -0.21 -2.20 8.32 -39.43 -0.33 -2.53 16 7 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 8 C -0.16 -1.53 10.04 -39.56 -0.40 -1.93 16 9 C -0.07 -0.74 9.68 -39.60 -0.38 -1.13 16 10 C -0.10 -1.16 4.39 -104.47 -0.46 -1.62 16 11 C -0.10 -1.06 5.55 -29.03 -0.16 -1.22 16 12 C 0.51 7.53 7.82 -10.99 -0.09 7.44 16 13 O -0.54 -9.99 16.03 5.56 0.09 -9.90 16 14 N -0.73 -10.12 5.56 -60.30 -0.33 -10.46 16 15 C 0.12 1.92 5.67 -4.04 -0.02 1.90 16 16 C -0.15 -2.69 5.65 -26.73 -0.15 -2.84 16 17 C 0.16 3.21 5.71 -4.04 -0.02 3.18 16 18 N -0.60 -15.27 2.92 -181.11 -0.53 -15.80 16 19 C 0.16 4.02 9.02 59.85 0.54 4.56 16 20 C -0.25 -6.95 9.66 -15.06 -0.15 -7.10 16 21 H 0.07 1.86 7.86 -52.49 -0.41 1.44 16 22 C 0.00 -0.01 5.08 -17.43 -0.09 -0.10 16 23 N -0.91 -26.46 10.73 55.49 0.60 -25.86 16 24 Si 0.90 21.91 29.58 -169.99 -5.03 16.88 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.61 7.09 -51.93 -0.37 0.24 16 31 H 0.07 0.54 6.21 -51.93 -0.32 0.21 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.13 1.07 5.49 -52.49 -0.29 0.78 16 36 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 40 H 0.10 1.06 7.69 -51.93 -0.40 0.66 16 41 H 0.40 4.68 8.47 -40.82 -0.35 4.33 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.04 0.91 8.03 -51.93 -0.42 0.50 16 47 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 48 H 0.03 0.79 7.35 -51.93 -0.38 0.41 16 49 H 0.04 1.09 7.33 -51.93 -0.38 0.71 16 50 H 0.00 -0.04 7.84 -51.93 -0.41 -0.44 16 51 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 414.95 15.07 6.25 6.25 Total: -1.00 -33.86 414.95 -9.62 -43.49 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.76 Total: 1.63 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.74 Total: -2.36 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.27 Total: -52.12 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.08 Total: -13.77 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.86 -9.62 -43.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712977679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.623 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds